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Perry C, Mujahid N, Takeuchi Y, Rayat ACME. Insights into product and process related challenges of lentiviral vector bioprocessing. Biotechnol Bioeng 2024; 121:2466-2481. [PMID: 37526313 DOI: 10.1002/bit.28498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 06/28/2023] [Accepted: 07/07/2023] [Indexed: 08/02/2023]
Abstract
Lentiviral vectors (LVs) are used in advanced therapies to transduce recipient cells for long term gene expression for therapeutic benefit. The vector is commonly pseudotyped with alternative viral envelope proteins to improve tropism and is selected for enhanced functional titers. However, their impact on manufacturing and the success of individual bioprocessing unit operations is seldom demonstrated. To the best of our knowledge, this is the first study on the processability of different Lentiviral vector pseudotypes. In this work, we compared three envelope proteins commonly pseudotyped with LVs across manufacturing conditions such as temperature and pump flow and across steps common to downstream processing. We have shown impact of filter membrane chemistry on vector recoveries with differing envelopes during clarification and observed complete vector robustness in high shear manufacturing environments using ultra scale-down technologies. The impact of shear during membrane filtration in a tangential flow filtration-mimic showed the benefit of employing higher shear rates, than currently used in LV production, to increase vector recovery. Likewise, optimized anion exchange chromatography purification in monolith format was determined. The results contradict a common perception that lentiviral vectors are susceptible to shear or high salt concentration (up to 1.7 M). This highlights the prospects of improving LV recovery by evaluating manufacturing conditions that contribute to vector losses for specific production systems.
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Affiliation(s)
- Christopher Perry
- Department of Biochemical Engineering, University College London, London, UK
- Division of Infection and Immunology, University College London, London, UK
- Biotherapeutics and Advanced Therapies, Scientific Research and Innovation, Medicines and Healthcare Products Regulatory Agency, South Mimms, Potters Bar, UK
| | - Noor Mujahid
- Department of Biochemical Engineering, University College London, London, UK
| | - Yasu Takeuchi
- Division of Infection and Immunology, University College London, London, UK
- Biotherapeutics and Advanced Therapies, Scientific Research and Innovation, Medicines and Healthcare Products Regulatory Agency, South Mimms, Potters Bar, UK
| | - Andrea C M E Rayat
- Department of Biochemical Engineering, University College London, London, UK
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2
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Rathore AS, Bhambure R. High-Throughput Process Development: I-Process Chromatography. Methods Mol Biol 2021; 2178:11-20. [PMID: 33128739 DOI: 10.1007/978-1-0716-0775-6_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Chromatographic separation serves as "a workhorse" for downstream process development and plays a key role in the removal of product-related, host-cell-related, and process-related impurities. Complex and poorly characterized raw materials and feed material, low feed concentration, product instability, and poor mechanistic understanding of the processes are some of the critical challenges that are faced during the development of a chromatographic step. Traditional process development is performed as a trial-and-error-based evaluation and often leads to a suboptimal process. A high-throughput process development (HTPD) platform involves the integration of miniaturization, automation, and parallelization and provides a systematic approach for time- and resource-efficient chromatographic process development. Creation of such platforms requires the integration of mechanistic knowledge of the process with various statistical tools for data analysis. The relevance of such a platform is high in view of the constraints with respect to time and resources that the biopharma industry faces today.This protocol describes the steps involved in performing the HTPD of chromatography steps. It describes the operation of a commercially available device (PreDictor™ plates from GE Healthcare). This device is available in 96-well format with 2 or 6 μL well size. We also discuss the challenges that one faces when performing such experiments as well as possible solutions to alleviate them. Besides describing the operation of the device, the protocol also presents an approach for statistical analysis of the data that are gathered from such a platform. A case study involving the use of the protocol for examining ion exchange chromatography of the Granulocyte Colony Stimulating Factor (GCSF), a therapeutic product, is briefly discussed. This is intended to demonstrate the usefulness of this protocol in generating data that are representative of the data obtained at the traditional lab scale. The agreement in the data is indeed very significant (regression coefficient 0.93). We think that this protocol will be of significant value to those involved in performing the high-throughput process development of the chromatography process.
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Affiliation(s)
- Anurag S Rathore
- Department of Chemical Engineering, Indian Institute of Technology, New Delhi, India.
| | - R Bhambure
- Department of Chemical Engineering, Indian Institute of Technology, New Delhi, India
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Design space and robustness analysis of batch and counter-current frontal chromatography processes for the removal of antibody aggregates. J Chromatogr A 2020; 1619:460943. [PMID: 32061360 DOI: 10.1016/j.chroma.2020.460943] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 01/31/2020] [Accepted: 02/02/2020] [Indexed: 12/11/2022]
Abstract
Increasing molecular diversity and market competition requires biopharmaceutical manufacturers to intensify their processes. In this respect, frontal chromatography on cation exchange resins has shown its potential to effectively remove aggregates. However, yield losses during the wash step need to be accepted in order to ensure robust product quality. In this work, we present a novel counter-current frontal chromatography process called Flow2, which uses inline dilution during an interconnected wash phase to allow high monomer recovery without contaminating the product pool with impurities. Its model-based design spaces under purity and yield constraints are compared with those corresponding to traditional batch processes in terms of size and process attributes yield and productivity. The Flow2 process shows the largest extent of feasible operating points independent of feed conditions. Thereby, it allows the implementation of higher ionic strength wash, thus widening the range of operating conditions resulting in yields above 95% compared to batch processes. Productivities of batch and counter-current processes are the same at short regeneration times and equal residence time. However, long regeneration times, while influencing the size of the Flow2 design space, are not detrimental for its productivity resulting in twice as high values as obtained for the batch process. Furthermore, process robustness is evaluated by the ability of the process to maintain the required product quality when subjected to process parameter perturbations. It is found that the Flow2 process is able to retain a larger design space associated also with higher yields showing its ability to improve process attributes without sacrificing robustness at the same time.
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Turner R, Joseph A, Titchener-Hooker N, Bender J. Manufacturing of Proteins and Antibodies: Chapter Downstream Processing Technologies. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2019; 165:95-114. [PMID: 28776064 DOI: 10.1007/10_2016_54] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2023]
Abstract
Cell harvesting is the separation or retention of cells and cellular debris from the supernatant containing the target molecule Selection of harvest method strongly depends on the type of cells, mode of bioreactor operation, process scale, and characteristics of the product and cell culture fluid. Most traditional harvesting methods use some form of filtration, centrifugation, or a combination of both for cell separation and/or retention. Filtration methods include normal flow depth filtration and tangential flow microfiltration. The ability to scale down predictably the selected harvest method helps to ensure successful production and is critical for conducting small-scale characterization studies for confirming parameter targets and ranges. In this chapter we describe centrifugation and depth filtration harvesting methods, share strategies for harvest optimization, present recent developments in centrifugation scale-down models, and review alternative harvesting technologies.
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Affiliation(s)
- Richard Turner
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, MD, 20878, USA
| | - Adrian Joseph
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK
| | - Nigel Titchener-Hooker
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK
| | - Jean Bender
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, MD, 20878, USA.
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5
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Fernandez-Cerezo L, Rayat ACME, Chatel A, Pollard JM, Lye GJ, Hoare M. An ultra scale-down method to investigate monoclonal antibody processing during tangential flow filtration using ultrafiltration membranes. Biotechnol Bioeng 2019; 116:581-590. [PMID: 30411315 PMCID: PMC6492246 DOI: 10.1002/bit.26859] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Revised: 10/04/2018] [Accepted: 10/26/2018] [Indexed: 11/14/2022]
Abstract
The availability of material for experimental studies is a key constraint in the development of full‐scale bioprocesses. This is especially true for the later stages in a bioprocess sequence such as purification and formulation, where the product is at a relatively high concentration and traditional scale‐down models can require significant volumes. Using a combination of critical flow regime analysis, bioprocess modelling, and experimentation, ultra scale‐down (USD) methods can yield bioprocess information using only millilitre quantities before embarking on highly demanding full‐scale studies. In this study the performance of a pilot‐scale tangential flow filtration (TFF) system based on a membrane flat‐sheet cassette using pumped flow was predicted by devising an USD device comprising a stirred cell using a rotating disc. The USD device operates with just 2.1 cm2 of membrane area and, for example, just 1.7 mL of feed for diafiltration studies. The novel features of the design involve optimisation of the disc location and the membrane configuration to yield an approximately uniform shear rate. This is characterised using computational fluid dynamics for a defined layer above the membrane surface. A pilot‐scale TFF device operating at ~500‐fold larger feed volume and membrane area was characterised in terms of the shear rate derived from flow rate‐pressure drop relationships for the cassette. Good agreement was achieved between the USD and TFF devices for the flux and resistance values at equivalent average shear rates for a monoclonal antibody diafiltration stage.
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Affiliation(s)
- Lara Fernandez-Cerezo
- Department of Biochemical Engineering, University College London, London, UK.,Downstream Process Development and Engineering, Merck and Co., Inc, Kenilworth, New Jersey
| | - Andrea C M E Rayat
- Department of Biochemical Engineering, University College London, London, UK
| | - Alex Chatel
- Department of Biochemical Engineering, University College London, London, UK
| | - Jennifer M Pollard
- Downstream Process Development and Engineering, Merck and Co., Inc, Kenilworth, New Jersey
| | - Gary J Lye
- Department of Biochemical Engineering, University College London, London, UK
| | - Michael Hoare
- Department of Biochemical Engineering, University College London, London, UK
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Melinek BJ, Dessoy S, Wright B, Bracewell DG, Mukhopadhyay TK. Ultra scale-down approaches to study the centrifugal harvest for viral vaccine production. Biotechnol Bioeng 2018; 115:1226-1238. [PMID: 29315484 DOI: 10.1002/bit.26546] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Accepted: 01/03/2018] [Indexed: 02/06/2023]
Abstract
Large scale continuous cell-line cultures promise greater reproducibility and efficacy for the production of influenza vaccines, and adenovirus for gene therapy. This paper seeks to use an existing validated ultra scale-down tool, which is designed to mimic the commercial scale process environment using only milliliters of material, to provide some initial insight into the performance of the harvest step for these processes. The performance of industrial scale centrifugation and subsequent downstream process units is significantly affected by shear. The properties of these cells, in particular their shear sensitivity, may be changed considerably by production of a viral product, but literature on this is limited to date. In addition, the scale-down tool used here has not previously been applied to the clarification of virus production processes. The results indicate that virus infected cells do not actually show any increase in sensitivity to shear, and may indeed become less shear sensitive, in a similar manner to that previously observed in old or dead cell cultures. Clarification may be most significantly dependent on the virus release mechanism, with the budding influenza virus producing a much greater decrease in clarification than the lytic, non-enveloped adenovirus. A good match was also demonstrated to the industrial scale performance in terms of clarification, protein release, and impurity profile.
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Affiliation(s)
- Beatrice J Melinek
- Department of Biochemical Engineering, Bernard Katz building, University College London, London, UK
| | | | - Bernice Wright
- Department of Biochemical Engineering, Bernard Katz building, University College London, London, UK
| | - Dan G Bracewell
- Department of Biochemical Engineering, Bernard Katz building, University College London, London, UK
| | - Tarit K Mukhopadhyay
- Department of Biochemical Engineering, Bernard Katz building, University College London, London, UK
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Marques MP, Szita N. Bioprocess microfluidics: applying microfluidic devices for bioprocessing. Curr Opin Chem Eng 2017; 18:61-68. [PMID: 29276669 PMCID: PMC5727670 DOI: 10.1016/j.coche.2017.09.004] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Microfluidic devices as novel bioprocess development tools. Processes with stem cells, microbes and enzymes are viable in microfluidic devices. Microfluidic devices with integrated sensors provide high quality data. Laminar flow enables spatial and temporal control over transport phenomena. Standardization of devices required for automation and industrial uptake.
Scale-down approaches have long been applied in bioprocessing to resolve scale-up problems. Miniaturized bioreactors have thrived as a tool to obtain process relevant data during early-stage process development. Microfluidic devices are an attractive alternative in bioprocessing development due to the high degree of control over process variables afforded by the laminar flow, and the possibility to reduce time and cost factors. Data quality obtained with these devices is high when integrated with sensing technology and is invaluable for scale-translation and to assess the economical viability of bioprocesses. Microfluidic devices as upstream process development tools have been developed in the area of small molecules, therapeutic proteins, and cellular therapies. More recently, they have also been applied to mimic downstream unit operations.
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Affiliation(s)
- Marco Pc Marques
- Department of Biochemical Engineering, University College London, Bernard Katz Building, Gordon Street, London WC1H 0AH, United Kingdom
| | - Nicolas Szita
- Department of Biochemical Engineering, University College London, Bernard Katz Building, Gordon Street, London WC1H 0AH, United Kingdom
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8
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Kazemi AS, Boivin L, Mi Yoo S, Ghosh R, Latulippe DR. Elucidation of filtration performance of hollow-fiber membranes via a high-throughput screening platform. J Memb Sci 2017. [DOI: 10.1016/j.memsci.2017.03.042] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Abstract
Escherichia coli, Saccharomyces cerevisiae, and Pichia pastoris are the standard platforms for biopharmaceutical production with 40% of all between 2010 to 2014 approved protein drugs produced in those microbial hosts. Typically, products overexpressed E. coli and S. cerevisiae remain in the cytosol or are secreted into the periplasm. Consequently, efficient cell disruption is essential for high product recovery during microbial production. Process development platforms at microscale are essential to shorten time to market. While high-pressure homogenization is the industry standard for cell disruption at large scale this method is not practicable for experiments in microscale. This review describes microscale methods for cell disruption at scales as low as 200 µL. Strategies for automation, parallelization and miniaturization, as well as comparability of the results at this scale to high pressure homogenization are considered as those criteria decide which methods are most suited for scale down. Those aspects are discussed in detail for protein overexpression in E. coli and yeast but also the relevance for alternative products and host such as microalgae are taken into account. The authors conclude that bead milling is the best comparable microscale method to large scale high-pressure homogenization and therefore the most suitable technique for automated process development of microbial hosts with the exception of pDNA production.
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Affiliation(s)
- Cornelia Walther
- Department of Biotechnology, University of Natural Resources and Life Sciences Vienna, Vienna, Austria.,Boehringer-Ingelheim Regional Center Vienna, Vienna, Austria
| | - Astrid Dürauer
- Department of Biotechnology, University of Natural Resources and Life Sciences Vienna, Vienna, Austria
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10
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Joseph A, Goldrick S, Mollet M, Turner R, Bender J, Gruber D, Farid SS, Titchener-Hooker N. An automated laboratory-scale methodology for the generation of sheared mammalian cell culture samples. Biotechnol J 2017; 12. [DOI: 10.1002/biot.201600730] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2016] [Revised: 02/12/2017] [Accepted: 02/12/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Adrian Joseph
- The Advanced Centre of Biochemical Engineering; Department of Biochemical Engineering; University College London; London UK
| | - Stephen Goldrick
- The Advanced Centre of Biochemical Engineering; Department of Biochemical Engineering; University College London; London UK
| | - Michael Mollet
- MedImmune; Gaithersburg Headquarters; Gaithersburg MD USA
| | | | - Jean Bender
- MedImmune; Gaithersburg Headquarters; Gaithersburg MD USA
| | - David Gruber
- MedImmune; Milstein Building, Granta Park; Cambridge UK
| | - Suzanne S. Farid
- The Advanced Centre of Biochemical Engineering; Department of Biochemical Engineering; University College London; London UK
| | - Nigel Titchener-Hooker
- The Advanced Centre of Biochemical Engineering; Department of Biochemical Engineering; University College London; London UK
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11
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Ultra scale-down approaches to enhance the creation of bioprocesses at scale: impacts of process shear stress and early recovery stages. Curr Opin Chem Eng 2016. [DOI: 10.1016/j.coche.2016.09.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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12
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Pathak M, Rathore AS. Mechanistic understanding of fouling of protein A chromatography resin. J Chromatogr A 2016; 1459:78-88. [DOI: 10.1016/j.chroma.2016.06.084] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Revised: 06/28/2016] [Accepted: 06/30/2016] [Indexed: 10/21/2022]
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13
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Dürauer A, Hobiger S, Walther C, Jungbauer A. Mixing at the microscale: Power input in shaken microtiter plates. Biotechnol J 2016; 11:1539-1549. [DOI: 10.1002/biot.201600027] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Revised: 05/18/2016] [Accepted: 06/16/2016] [Indexed: 01/04/2023]
Affiliation(s)
- Astrid Dürauer
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
- Austrian Centre of Industrial Biotechnology Vienna Austria
| | | | - Cornelia Walther
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
| | - Alois Jungbauer
- Department of Biotechnology University of Natural Resources and Life Sciences Vienna Austria
- Austrian Centre of Industrial Biotechnology Vienna Austria
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14
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Hassan S, Huang H, Warren K, Mahdavi B, Smith D, Jong S, Farid SS. Process change evaluation framework for allogeneic cell therapies: impact on drug development and commercialization. Regen Med 2016; 11:287-305. [DOI: 10.2217/rme-2015-0034] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Aims: Some allogeneic cell therapies requiring a high dose of cells for large indication groups demand a change in cell expansion technology, from planar units to microcarriers in single-use bioreactors for the market phase. The aim was to model the optimal timing for making this change. Materials & methods: A development lifecycle cash flow framework was created to examine the implications of process changes to microcarrier cultures at different stages of a cell therapy's lifecycle. Results: The analysis performed under assumptions used in the framework predicted that making this switch earlier in development is optimal from a total expected out-of-pocket cost perspective. From a risk-adjusted net present value view, switching at Phase I is economically competitive but a post-approval switch can offer the highest risk-adjusted net present value as the cost of switching is offset by initial market penetration with planar technologies. Conclusion: The framework can facilitate early decision-making during process development.
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Affiliation(s)
- Sally Hassan
- Department of Biochemical Engineering, The Advanced Centre for Biochemical Engineering, University College London, Gordon Street, London, WC1H 0AH, UK
| | - Hsini Huang
- Graduate Institute of Public Affairs & Department of Political Science, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617 Taiwan
| | - Kim Warren
- Cell Processing Technologies, Lonza Walkersville, Inc., 8830 Biggs Ford Road, Walkersville, MD 21793-0127, USA
| | - Behzad Mahdavi
- Cell Processing Technologies, Lonza Walkersville, Inc., 8830 Biggs Ford Road, Walkersville, MD 21793-0127, USA
| | - David Smith
- Cell Processing Technologies, Lonza Walkersville, Inc., 8830 Biggs Ford Road, Walkersville, MD 21793-0127, USA
| | - Simcha Jong
- Department of Management Science & Innovation, University College London, Gower St, London, WC1E 6BT, UK
- Harvard TH Chan School of Public Health, Dept Global Health & Population, Boston, MA 02115, USA
| | - Suzanne S Farid
- Department of Biochemical Engineering, The Advanced Centre for Biochemical Engineering, University College London, Gordon Street, London, WC1H 0AH, UK
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Joseph A, Kenty B, Mollet M, Hwang K, Rose S, Goldrick S, Bender J, Farid SS, Titchener-Hooker N. A scale-down mimic for mapping the process performance of centrifugation, depth and sterile filtration. Biotechnol Bioeng 2016; 113:1934-41. [PMID: 26927621 PMCID: PMC4999036 DOI: 10.1002/bit.25967] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Revised: 02/19/2016] [Accepted: 02/24/2016] [Indexed: 11/28/2022]
Abstract
In the production of biopharmaceuticals disk‐stack centrifugation is widely used as a harvest step for the removal of cells and cellular debris. Depth filters followed by sterile filters are often then employed to remove residual solids remaining in the centrate. Process development of centrifugation is usually conducted at pilot‐scale so as to mimic the commercial scale equipment but this method requires large quantities of cell culture and significant levels of effort for successful characterization. A scale‐down approach based upon the use of a shear device and a bench‐top centrifuge has been extended in this work towards a preparative methodology that successfully predicts the performance of the continuous centrifuge and polishing filters. The use of this methodology allows the effects of cell culture conditions and large‐scale centrifugal process parameters on subsequent filtration performance to be assessed at an early stage of process development where material availability is limited. Biotechnol. Bioeng. 2016;113: 1934–1941. © 2016 The Authors. Biotechnology and Bioengineering Published by Wiley Periodicals, Inc.
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Affiliation(s)
- Adrian Joseph
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, United Kingdom
| | - Brian Kenty
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, Maryland
| | - Michael Mollet
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, Maryland
| | - Kenneth Hwang
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, Maryland
| | - Steven Rose
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, Maryland
| | - Stephen Goldrick
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, United Kingdom
| | - Jean Bender
- MedImmune LLC Gaithersburg Headquarters, One MedImmune Way, Gaithersburg, Maryland
| | - Suzanne S Farid
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, United Kingdom
| | - Nigel Titchener-Hooker
- The Advanced Centre of Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, United Kingdom.
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16
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Guo S, Kiefer H, Zhou D, Guan YH, Wang S, Wang H, Lu Y, Zhuang Y. A scale-down cross-flow filtration technology for biopharmaceuticals and the associated theory. J Biotechnol 2016; 221:25-31. [PMID: 26795357 DOI: 10.1016/j.jbiotec.2016.01.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Revised: 12/27/2015] [Accepted: 01/07/2016] [Indexed: 11/19/2022]
Abstract
Use of microfiltration (MF) and ultrafiltration (UF) in cross-flow mode has been intensifying in downstream processing for expensive biopharmaceuticals. A scale-down cross-flow module with ring channel was constructed for reducing costs and increasing throughput. Commensurate with its validation, a new scale down (or scale up) theoretical framework has been further developed to 3 operational parities: (1) ratio of initial sample volume to membrane area, (2) shear force adjacent to membrane surface, and (3) initial permeate flux. By keeping identical initial physicochemical properties, we show that these 3 operational parities are equivalent to 2 further time-dependent theoretical parities for flux and transmission respectively. Importantly, transmission sensitively reflects membrane conditions for partially transmissible molecules or particles. Computational fluid dynamics simulation was conducted to confirm nearly identical shear forces for the mini and its reference filters. Permeate fluxes in suspension containing Escherichia coli phage T7, a monoclonal antibody (MAb) or other proteins, and transmission (with phage T7) were measured. For application demonstration, diafiltration and concentration modes were applied to the MAb, and separation mode to a mixture of bovine serum albumin and lysozyme. In conclusion, the developed scale-down filter has been shown to behave identically or similarly to its reference filter.
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Affiliation(s)
- Shuyin Guo
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, & The College of Biotechnology, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Hans Kiefer
- Institute of Applied Biotechnology, Biberach University of Applied Sciences, Karlstrasse 11, 88400 Biberach, Germany
| | - Dansheng Zhou
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, & The College of Biotechnology, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Yue Hugh Guan
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, & The College of Biotechnology, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China.
| | - Shili Wang
- Shanghai Sunny Hengping Scientific Instrument Co. Ltd., 456 Hong Cao Rd., Shanghai 200233, PR China
| | - Hua Wang
- Shanghai Sunny Hengping Scientific Instrument Co. Ltd., 456 Hong Cao Rd., Shanghai 200233, PR China
| | - Ying Lu
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, & The College of Biotechnology, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Institute of Applied Biotechnology, Biberach University of Applied Sciences, Karlstrasse 11, 88400 Biberach, Germany
| | - Yingping Zhuang
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, & The College of Biotechnology, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
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18
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Conroy N, Tebble I, Lye GJ. Creation of an ultra scale-down bioreactor mimic for rapid development of lignocellulosic enzymatic hydrolysis processes. JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY (OXFORD, OXFORDSHIRE : 1986) 2015; 90:1983-1990. [PMID: 27594729 PMCID: PMC4989448 DOI: 10.1002/jctb.4801] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 08/18/2015] [Accepted: 08/18/2015] [Indexed: 06/06/2023]
Abstract
BACKGROUND Cellulosic bioethanol processes involve several steps, all of which require experimental optimisation. A significant aid to this research would be a validated ultra scale-down (USD) model that could be used to perform rapid, wide ranging screening and optimisation experiments using limited materials under process relevant conditions. RESULTS In this work, the use of 30 mL shaken conical tubes as a USD model for an enzymatic hydrolysis process is established. The approach is demonstrated for the hydrolysis of distillers' dried grains with solubles (DDGS). Results from the USD tubes closely mimic those obtained from 4 L stirred tanks, in terms of the rate, composition and concentrations of sugars released, representing an 80-fold scale reduction. The utility of the USD approach is illustrated by investigating factors that may be limiting hydrolysis yields at high solids loadings. Washing the residual solids periodically during hydrolysis allowed 100% of the available sugar to be hydrolysed using commercially available enzymes. CONCLUSION The results demonstrate that the USD system reported successfully mimics the performance of conventional stirred tanks under industrially relevant conditions. The utility of the system was confirmed through its use to investigate performance limitation using a commercially relevant feedstock. © 2015 The Authors. Journal of Chemical Technology & Biotechnology published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Neil Conroy
- ReBio Technologies LtdUnit 59 Dunsfold ParkCranleighSurreyGU6 8TBUK; The Advanced Centre for Biochemical Engineering, Department of Biochemical EngineeringUniversity College LondonGordon StreetLondonWC1H 0AHUK
| | - Ian Tebble
- ReBio Technologies Ltd Unit 59 Dunsfold Park Cranleigh Surrey GU6 8TB UK
| | - Gary J Lye
- The Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering University College London Gordon Street London WC1H 0AH UK
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A microscale method of protein extraction from bacteria: Interaction of Escherichia coli with cationic microparticles. J Biotechnol 2015; 207:21-9. [DOI: 10.1016/j.jbiotec.2015.04.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Revised: 04/10/2015] [Accepted: 04/11/2015] [Indexed: 11/21/2022]
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Noyes A, Huffman B, Berrill A, Merchant N, Godavarti R, Titchener-Hooker N, Coffman J, Sunasara K, Mukhopadhyay T. High throughput screening of particle conditioning operations: II. Evaluation of scale-up heuristics with prokaryotically expressed polysaccharide vaccines. Biotechnol Bioeng 2015; 112:1568-82. [PMID: 25727194 DOI: 10.1002/bit.25580] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2014] [Revised: 02/15/2015] [Accepted: 02/17/2015] [Indexed: 11/08/2022]
Abstract
Multivalent polysaccharide conjugate vaccines are typically comprised of several different polysaccharides produced with distinct and complex production processes. Particle conditioning steps, such as precipitation and flocculation, may be used to aid the recovery and purification of such microbial vaccine products. An ultra scale-down approach to purify vaccine polysaccharides at the micro-scale would greatly enhance productivity, robustness, and speed the development of novel conjugate vaccines. In part one of this series, we described a modular and high throughput approach to develop particle conditioning processes (HTPC) for biologicals that combines flocculation, solids removal, and streamlined analytics. In this second part of the series, we applied HTPC to industrially relevant feedstreams comprised of capsular polysaccharides (CPS) from several bacterial species. The scalability of HTPC was evaluated between 0.8 mL and 13 L scales, with several different scaling methodologies examined. Clarification, polysaccharide yield, impurity clearance, and product quality achieved with HTPC were reproducible and comparable with larger scales. Particle sizing was the response with greatest sensitivity to differences in processing scale and enabled the identification of useful scaling rules. Scaling with constant impeller tip speed or power per volume in the impeller swept zone offered the most accurate scale up, with evidence that time integration of these values provided the optimal basis for scaling. The capability to develop a process at the micro-scale combined with evidence-based scaling metrics provide a significant advance for purification process development of vaccine processes. The USD system offers similar opportunities for HTPC of proteins and other complex biological molecules.
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Affiliation(s)
- Aaron Noyes
- The Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, Gordon Street, London, WC1E 7JE, UK.,Pfizer Bioprocess R&D, Andover, Massachusetts
| | - Ben Huffman
- Pfizer Bioprocess R&D, Chesterfield, Missouri
| | | | | | | | - Nigel Titchener-Hooker
- The Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, Gordon Street, London, WC1E 7JE, UK
| | | | | | - Tarit Mukhopadhyay
- The Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering, University College London, Bernard Katz Building, Gordon Street, London, WC1E 7JE, UK.
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Kazemi AS, Latulippe DR. Stirred well filtration (SWF) – A high-throughput technique for downstream bio-processing. J Memb Sci 2014. [DOI: 10.1016/j.memsci.2014.07.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Espuny Garcia Del Real G, Davies J, Bracewell DG. Scale-down characterization of post-centrifuge flocculation processes for high-throughput process development. Biotechnol Bioeng 2014; 111:2486-98. [PMID: 24942244 PMCID: PMC4232874 DOI: 10.1002/bit.25313] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Revised: 06/02/2014] [Accepted: 06/13/2014] [Indexed: 11/29/2022]
Abstract
Flocculation unit operations are being revisited as a strategy to ease the burden posed on clarification and purification operations by the increasingly high cell density cultures used in the biopharmaceutical industry. The purpose of this study was to determine the key process parameters impacting flocculation scale-up and use this understanding to develop an automated ultra-scale down (USD) method for the rapid characterization of flocculation at the microliter scale. The conditions under which flocculation performance of a non-geometrically similar vessel three orders of magnitude larger can be mimicked by the USD platform are reported. Saccharomyces cerevisiae clarified homogenate was flocculated with poly(ethyleneimine) (PEI) to remove the residual solids remaining in the centrate. Flocculant addition time modulated flocculation performance depending on the predominant mixing time scale (i.e. macro-, meso- or micromixing). Particle growth and breakage was mimicked at the two flocculation scales by the average turbulent energy dissipation (εavg) and impeller tip speed (vtip) scale-up bases. The results obtained were used to develop an USD method. The USD method proposed uses constant εavg as the scale-up basis under a micromixing controlled regime. These conditions mimicked the STR flocculation performance within a ±5% error margin. Operation in the mesomixing regime led to particle size deviations between the flocculation scales of ≤50 %. These results, in addition to the microscopic observations made, demonstrate the USD system presented in this work can produce process-relevant flocculated material at the microliter scale under the correct operating conditions.
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Affiliation(s)
- Georgina Espuny Garcia Del Real
- The Advanced Centre for Biochemical Engineering, Department of Biochemical Engineering, University College London, Torrington Place, London, WC1E 7JE, UK; Lonza Biologics plc, Slough, Berkshire, SL1 4DX, UK
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Ren J, Yao P, Cao Y, Cao J, Zhang L, Wang Y, Jia L. Application of cyclodextrin-based eluents in hydrophobic charge-induction chromatography: Elution of antibody at neutral pH. J Chromatogr A 2014; 1352:62-8. [DOI: 10.1016/j.chroma.2014.05.060] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Revised: 05/19/2014] [Accepted: 05/20/2014] [Indexed: 10/25/2022]
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High-throughput process development: I. Process chromatography. Methods Mol Biol 2014. [PMID: 24648064 DOI: 10.1007/978-1-62703-977-2_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Chromatographic separation serves as "a workhorse" for downstream process development and plays a key role in removal of product-related, host cell-related, and process-related impurities. Complex and poorly characterized raw materials and feed material, low feed concentration, product instability, and poor mechanistic understanding of the processes are some of the critical challenges that are faced during development of a chromatographic step. Traditional process development is performed as trial-and-error-based evaluation and often leads to a suboptimal process. High-throughput process development (HTPD) platform involves an integration of miniaturization, automation, and parallelization and provides a systematic approach for time- and resource-efficient chromatography process development. Creation of such platforms requires integration of mechanistic knowledge of the process with various statistical tools for data analysis. The relevance of such a platform is high in view of the constraints with respect to time and resources that the biopharma industry faces today. This protocol describes the steps involved in performing HTPD of process chromatography step. It described operation of a commercially available device (PreDictor™ plates from GE Healthcare). This device is available in 96-well format with 2 or 6 μL well size. We also discuss the challenges that one faces when performing such experiments as well as possible solutions to alleviate them. Besides describing the operation of the device, the protocol also presents an approach for statistical analysis of the data that is gathered from such a platform. A case study involving use of the protocol for examining ion-exchange chromatography of granulocyte colony-stimulating factor (GCSF), a therapeutic product, is briefly discussed. This is intended to demonstrate the usefulness of this protocol in generating data that is representative of the data obtained at the traditional lab scale. The agreement in the data is indeed very significant (regression coefficient 0.93). We think that this protocol will be of significant value to those involved in performing high-throughput process development of process chromatography.
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Rayat AC, Lye GJ, Micheletti M. A novel microscale crossflow device for the rapid evaluation of microfiltration processes. J Memb Sci 2014. [DOI: 10.1016/j.memsci.2013.10.046] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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27
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Bhambure R, Sharma I, Pattanayek SK, Rathore AS. Qualitative and quantitative examination of non-specific protein adsorption on filter membrane disks of a commercially available high throughput chromatography device. J Memb Sci 2014. [DOI: 10.1016/j.memsci.2013.09.052] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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28
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Chhatre S, Bracewell DG. Measurement of uptake curves and adsorption isotherms by automated microscale chromatography pipette tips. Methods Mol Biol 2014; 1129:67-73. [PMID: 24648068 DOI: 10.1007/978-1-62703-977-2_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Automated microscale chromatography using pipette tips packed with microliters of resin is seen as an increasingly attractive option for high-throughput screening of purification conditions during early phase biopharmaceutical development. Two types of data that can be produced by these studies are uptake curves and isotherms, providing valuable fundamental separation data to assist with the prediction of larger-scale performance. This chapter will describe an operating protocol for this type of experiment using the example of ovine polyclonal antibodies binding to a multimodal weak cation exchange resin.
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Affiliation(s)
- Sunil Chhatre
- The Advanced Centre for Biochemical Engineering, University College London, Gower Street, London, WC1E 7JE, UK,
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29
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Wu T, Zhou Y. An Intelligent Automation Platform for Rapid Bioprocess Design. ACTA ACUST UNITED AC 2013; 19:381-93. [PMID: 24088579 PMCID: PMC4113973 DOI: 10.1177/2211068213499756] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Indexed: 11/15/2022]
Abstract
Bioprocess development is very labor intensive, requiring many experiments to characterize each unit operation in the process sequence to achieve product safety and process efficiency. Recent advances in microscale biochemical engineering have led to automated experimentation. A process design workflow is implemented sequentially in which (1) a liquid-handling system performs high-throughput wet lab experiments, (2) standalone analysis devices detect the data, and (3) specific software is used for data analysis and experiment design given the user’s inputs. We report an intelligent automation platform that integrates these three activities to enhance the efficiency of such a workflow. A multiagent intelligent architecture has been developed incorporating agent communication to perform the tasks automatically. The key contribution of this work is the automation of data analysis and experiment design and also the ability to generate scripts to run the experiments automatically, allowing the elimination of human involvement. A first-generation prototype has been established and demonstrated through lysozyme precipitation process design. All procedures in the case study have been fully automated through an intelligent automation platform. The realization of automated data analysis and experiment design, and automated script programming for experimental procedures has the potential to increase lab productivity.
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Affiliation(s)
- Tianyi Wu
- Department of Biochemical Engineering, University College London, London, UK
| | - Yuhong Zhou
- Department of Biochemical Engineering, University College London, London, UK
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Neubauer P, Cruz N, Glauche F, Junne S, Knepper A, Raven M. Consistent development of bioprocesses from microliter cultures to the industrial scale. Eng Life Sci 2013. [DOI: 10.1002/elsc.201200021] [Citation(s) in RCA: 82] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Peter Neubauer
- Bioprocess Engineering, Department of Biotechnology; Technische Universität Berlin; Berlin; Germany
| | - Nicolas Cruz
- Bioprocess Engineering, Department of Biotechnology; Technische Universität Berlin; Berlin; Germany
| | - Florian Glauche
- Bioprocess Engineering, Department of Biotechnology; Technische Universität Berlin; Berlin; Germany
| | - Stefan Junne
- Bioprocess Engineering, Department of Biotechnology; Technische Universität Berlin; Berlin; Germany
| | - Andreas Knepper
- Bioprocess Engineering, Department of Biotechnology; Technische Universität Berlin; Berlin; Germany
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Bhambure R, Rathore AS. Chromatography process development in the quality by design paradigm I: Establishing a high-throughput process development platform as a tool for estimating “characterization space” for an ion exchange chromatography step. Biotechnol Prog 2013; 29:403-14. [DOI: 10.1002/btpr.1705] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2012] [Revised: 02/06/2013] [Indexed: 11/06/2022]
Affiliation(s)
- R. Bhambure
- Dept. of Chemical Engineering; Indian Institute of Technology; Hauz Khas New Delhi India
| | - A. S. Rathore
- Dept. of Chemical Engineering; Indian Institute of Technology; Hauz Khas New Delhi India
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Lau EC, Kong S, McNulty S, Entwisle C, Mcilgorm A, Dalton KA, Hoare M. An ultra scale-down characterization of low shear stress primary recovery stages to enhance selectivity of fusion protein recovery from its molecular variants. Biotechnol Bioeng 2013; 110:1973-83. [DOI: 10.1002/bit.24865] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Revised: 01/23/2013] [Accepted: 02/05/2013] [Indexed: 11/12/2022]
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33
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Evaluation of immunoglobulin adsorption on the hydrophobic charge-induction resins with different ligand densities and pore sizes. J Chromatogr A 2013; 1278:61-8. [DOI: 10.1016/j.chroma.2012.12.054] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Revised: 12/18/2012] [Accepted: 12/20/2012] [Indexed: 11/24/2022]
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Extreme scale-down approaches for rapid chromatography column design and scale-up during bioprocess development. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2013. [PMID: 23307294 DOI: 10.1007/10_2012_174] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register]
Abstract
Chromatography is a ubiquitous protein purification step owing to its unparalleled ability to recover and purify molecules from highly complex industrial feedstocks. Traditionally, column development has been driven by a combination of prior experience and empirical studies in order to make the best choices for design variables. Economic constraints now demand that companies engage with a more systematic exploration of a chromatographic design space. To deliver this capability using purely conventional laboratory columns, however, would require considerable resources to identify practical and economical operating protocols. Hence, recently there has been increased use of extremely small-scale devices that gather data quickly and with minimal feed requirements. Such information can be obtained either during early development for screening and trend-finding purposes or later for more accurate scale-up prediction. This chapter describes some of the key drivers for these small-scale studies and the different types of extreme scale-down chromatography formats that exist and illustrates their use through published case studies. Since extreme scale-down experimentation is linked to fundamental mechanistic engineering approaches as well, the utility of these in delivering process understanding is also highlighted.
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Silva D, Azevedo A, Fernandes P, Chu V, Conde J, Aires-Barros M. Design of a microfluidic platform for monoclonal antibody extraction using an aqueous two-phase system. J Chromatogr A 2012; 1249:1-7. [DOI: 10.1016/j.chroma.2012.05.089] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 05/23/2012] [Accepted: 05/25/2012] [Indexed: 10/28/2022]
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Lopes A, Keshavarz-Moore E. Prediction and verification of centrifugal dewatering of P. pastoris fermentation cultures using an ultra scale-down approach. Biotechnol Bioeng 2012; 109:2039-47. [DOI: 10.1002/bit.24478] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2011] [Revised: 02/14/2012] [Accepted: 02/16/2012] [Indexed: 11/09/2022]
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Marques MP, Walshe K, Doyle S, Fernandes P, de Carvalho CC. Anchoring high-throughput screening methods to scale-up bioproduction of siderophores. Process Biochem 2012. [DOI: 10.1016/j.procbio.2011.11.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Marques MP, Fernandes P. Microfluidic devices: useful tools for bioprocess intensification. Molecules 2011; 16:8368-401. [PMID: 21963626 PMCID: PMC6264232 DOI: 10.3390/molecules16108368] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2011] [Revised: 09/21/2011] [Accepted: 09/28/2011] [Indexed: 11/16/2022] Open
Abstract
The dawn of the new millennium saw a trend towards the dedicated use of microfluidic devices for process intensification in biotechnology. As the last decade went by, it became evident that this pattern was not a short-lived fad, since the deliverables related to this field of research have been consistently piling-up. The application of process intensification in biotechnology is therefore seemingly catching up with the trend already observed in the chemical engineering area, where the use of microfluidic devices has already been upgraded to production scale. The goal of the present work is therefore to provide an updated overview of the developments centered on the use of microfluidic devices for process intensification in biotechnology. Within such scope, particular focus will be given to different designs, configurations and modes of operation of microreactors, but reference to similar features regarding microfluidic devices in downstream processing will not be overlooked. Engineering considerations and fluid dynamics issues, namely related to the characterization of flow in microchannels, promotion of micromixing and predictive tools, will also be addressed, as well as reflection on the analytics required to take full advantage of the possibilities provided by microfluidic devices in process intensification. Strategies developed to ease the implementation of experimental set-ups anchored in the use of microfluidic devices will be briefly tackled. Finally, realistic considerations on the current advantages and limitation on the use of microfluidic devices for process intensification, as well as prospective near future developments in the field, will be presented.
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Affiliation(s)
- Marco P.C. Marques
- Department of Bioengineering, Instituto Superior Técnico (IST), Universidade Técnica de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- IBB-Institute for Biotechnology and Bioengineering, Centre for Biological and Chemical Engineering, IST, Lisboa, Portugal
| | - Pedro Fernandes
- Department of Bioengineering, Instituto Superior Técnico (IST), Universidade Técnica de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- IBB-Institute for Biotechnology and Bioengineering, Centre for Biological and Chemical Engineering, IST, Lisboa, Portugal
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Looby M, Ibarra N, Pierce JJ, Buckley K, O'Donovan E, Heenan M, Moran E, Farid SS, Baganz F. Application of quality by design principles to the development and technology transfer of a major process improvement for the manufacture of a recombinant protein. Biotechnol Prog 2011; 27:1718-29. [PMID: 21948302 DOI: 10.1002/btpr.672] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2011] [Revised: 06/23/2011] [Indexed: 01/24/2023]
Abstract
This study describes the application of quality by design (QbD) principles to the development and implementation of a major manufacturing process improvement for a commercially distributed therapeutic protein produced in Chinese hamster ovary cell culture. The intent of this article is to focus on QbD concepts, and provide guidance and understanding on how the various components combine together to deliver a robust process in keeping with the principles of QbD. A fed-batch production culture and a virus inactivation step are described as representative examples of upstream and downstream unit operations that were characterized. A systematic approach incorporating QbD principles was applied to both unit operations, involving risk assessment of potential process failure points, small-scale model qualification, design and execution of experiments, definition of operating parameter ranges and process validation acceptance criteria followed by manufacturing-scale implementation and process validation. Statistical experimental designs were applied to the execution of process characterization studies evaluating the impact of operating parameters on product quality attributes and process performance parameters. Data from process characterization experiments were used to define the proven acceptable range and classification of operating parameters for each unit operation. Analysis of variance and Monte Carlo simulation methods were used to assess the appropriateness of process design spaces. Successful implementation and validation of the process in the manufacturing facility and the subsequent manufacture of hundreds of batches of this therapeutic protein verifies the approaches taken as a suitable model for the development, scale-up and operation of any biopharmaceutical manufacturing process.
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Affiliation(s)
- Mairead Looby
- Pfizer Ireland Pharmaceuticals, Grange Castle International Business Park, Dublin 22, Ireland.
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Perez-Pardo MA, Ali S, Balasundaram B, Mannall GJ, Baganz F, Bracewell DG. Assessment of the manufacturability of Escherichia coli high cell density fermentations. Biotechnol Prog 2011; 27:1488-96. [DOI: 10.1002/btpr.644] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2010] [Revised: 04/19/2011] [Indexed: 11/09/2022]
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41
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Chhatre S, Pampel L, Titchener-Hooker NJ. Integrated use of ultra scale-down and financial modeling to identify optimal conditions for the precipitation and centrifugal recovery of milk proteins. Biotechnol Prog 2011; 27:998-1008. [DOI: 10.1002/btpr.612] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2010] [Revised: 02/15/2011] [Indexed: 11/10/2022]
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42
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Chhatre S, Konstantinidis S, Ji Y, Edwards-Parton S, Zhou Y, Titchener-Hooker NJ. The simplex algorithm for the rapid identification of operating conditions during early bioprocess development: Case studies in FAb' precipitation and multimodal chromatography. Biotechnol Bioeng 2011; 108:2162-70. [DOI: 10.1002/bit.23151] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Revised: 03/09/2011] [Accepted: 03/14/2011] [Indexed: 11/08/2022]
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Reid CQ, Tait A, Baldascini H, Mohindra A, Racher A, Bilsborough S, Smales CM, Hoare M. Rapid whole monoclonal antibody analysis by mass spectrometry: An ultra scale-down study of the effect of harvesting by centrifugation on the post-translational modification profile. Biotechnol Bioeng 2010; 107:85-95. [PMID: 20506289 DOI: 10.1002/bit.22790] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
With the trend towards the generation and production of increasing numbers of complex biopharmaceutical (protein based) products, there is an increased need and requirement to characterize both the product and production process in terms of robustness and reproducibility. This is of particular importance for products from mammalian cell culture which have large molecular structures and more often than not complex post-translational modifications (PTMs) that can impact the efficacy, stability and ultimately the safety of the final product. It is therefore vital to understand how the operating conditions of a bioprocess affect the distribution and make up of these PTMs to ensure a consistent quality and activity in the final product. Here we have characterized a typical bioprocess and determined (a) how the time of harvest from a mammalian cell culture and, (b) through the use of an ultra scale-down mimic how the nature of the primary recovery stages, affect the distribution and make up of the PTMs observed on a recombinant IgG(4) monoclonal antibody. In particular we describe the use of rapid whole antibody analysis by mass spectrometry to analyze simultaneously the changes that occur to the cleavage of heavy chain C-terminal lysine residues and the glycosylation pattern, as well as the presence of HL dimers. The time of harvest was found to have a large impact upon the range of glycosylation patterns observed, but not upon C-terminal lysine cleavage. The culture age had a profound impact on the ratio of different glycan moieties found on antibody molecules. The proportion of short glycans increased (e.g., (G0F)(2) 20-35%), with an associated decrease in the proportion of long glycans with culture age (e.g., (G2F)(2) 7-4%, and G1F/G2F from 15.2% to 7.8%). Ultra scale-down mimics showed that subsequent processing of these cultures did not change the post-translational modifications investigated, but did increase the proportion of half antibodies present in the process stream. The combination of ultra scale-down methodology and whole antibody analysis by mass spectrometry has demonstrated that the effects of processing on the detailed molecular structure of a monoclonal antibody can be rapidly determined early in the development process. In this study we have demonstrated this analysis to be applicable to critical process design decisions (e.g., time of harvest) in terms of achieving a desired molecular structure, but this approach could also be applied as a selection criterion as to the suitability of a platform process for the preparation of a new drug candidate. Also the methodology provides means for bioprocess engineers to predict at the discovery phase how a bioprocess will impact upon the quality of the final product.
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Affiliation(s)
- C Q Reid
- Department of Biochemical Engineering, University College London, UK
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Chhatre S, Francis R, Bracewell DG, Titchener-Hooker NJ. An automated packed Protein G micro-pipette tip assay for rapid quantification of polyclonal antibodies in ovine serum. J Chromatogr B Analyt Technol Biomed Life Sci 2010; 878:3067-75. [DOI: 10.1016/j.jchromb.2010.09.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2010] [Revised: 09/08/2010] [Accepted: 09/15/2010] [Indexed: 11/25/2022]
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45
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Integration of scale-down experimentation and general rate modelling to predict manufacturing scale chromatographic separations. J Chromatogr A 2010; 1217:6917-26. [DOI: 10.1016/j.chroma.2010.08.063] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2010] [Revised: 08/23/2010] [Accepted: 08/25/2010] [Indexed: 11/21/2022]
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46
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Spelter LE, Steiwand A, Nirschl H. Processing of dispersions containing fine particles or biological products in tubular bowl centrifuges. Chem Eng Sci 2010. [DOI: 10.1016/j.ces.2010.04.028] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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47
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Zaman F, Allan CM, Ho SV. Ultra scale-down approaches for clarification of mammalian cell culture broths in disc-stack centrifuges. Biotechnol Prog 2010; 25:1709-16. [PMID: 19768799 DOI: 10.1002/btpr.275] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Ultra-scale down (USD) methodology developed by University College London for cell broth clarification with industrial centrifuges was applied to two common cell lines (NS0 and GS-CHO) expressing various therapeutic monoclonal antibodies. A number of centrifuges at various scales were used with shear devices operating either by high speed rotation or flow-through narrow channels. The USD methodology was found effective in accounting for both gravitational and shear effects on clarification performance with three continuous centrifuges at pilot and manufacturing scales. Different shear responses were observed with the two different cell lines and even with the same cell line expressing different products. Separate particle size analysis of the treated broths seems consistent with the shear results. Filterability of the centrifuged solutions was also evaluated to assess the utility of the USD approach for this part of the clarification operation.
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Affiliation(s)
- Ferhana Zaman
- Pfizer Global Biologics, Worldwide Pharmaceutical Sciences, PGRD, Pfizer Inc. Chesterfield, MO 63017, USA.
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48
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Miniaturization in biocatalysis. Int J Mol Sci 2010; 11:858-79. [PMID: 20479988 PMCID: PMC2869239 DOI: 10.3390/ijms11030858] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2010] [Revised: 02/08/2010] [Accepted: 02/09/2010] [Indexed: 12/14/2022] Open
Abstract
The use of biocatalysts for the production of both consumer goods and building blocks for chemical synthesis is consistently gaining relevance. A significant contribution for recent advances towards further implementation of enzymes and whole cells is related to the developments in miniature reactor technology and insights into flow behavior. Due to the high level of parallelization and reduced requirements of chemicals, intensive screening of biocatalysts and process variables has become more feasible and reproducibility of the bioconversion processes has been substantially improved. The present work aims to provide an overview of the applications of miniaturized reactors in bioconversion processes, considering multi-well plates and microfluidic devices, update information on the engineering characterization of the hardware used, and present perspective developments in this area of research.
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49
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Mason C, Dunnill P. Assessing the value of autologous and allogeneic cells for regenerative medicine. Regen Med 2010; 4:835-53. [PMID: 19903003 DOI: 10.2217/rme.09.64] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
The advantages and disadvantages of autologous and allogeneic human cells for regenerative medicine are summarized. The comparison of relative advantages includes: ease and cost of treating large numbers of patients, the speed of availability of therapy and the differing complexity of the development pathways. The comparison of relative disadvantages deals with issues such as variability of source material, the risks of cell abnormality and of viral and prion contamination, and the sensitive issues surrounding use of embryo-derived cells. From the comparisons, several potentially decisive issues are drawn out, such as possible immune response and teratoma formation, the impact of patents and the virtues of hospital versus industry-centered development.
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Affiliation(s)
- Chris Mason
- Advanced Centre for Biochemical Engineering, University College London, London, UK.
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50
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A microscale approach for predicting the performance of chromatography columns used to recover therapeutic polyclonal antibodies. J Chromatogr A 2009; 1216:7806-15. [DOI: 10.1016/j.chroma.2009.09.038] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2009] [Revised: 09/11/2009] [Accepted: 09/16/2009] [Indexed: 11/21/2022]
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