1
|
Chang L, Cui H, Li F, Job Zhang YHP, Zhang L. ATP regeneration by ATPases for in vitro biotransformation. Biotechnol Adv 2024; 73:108377. [PMID: 38763231 DOI: 10.1016/j.biotechadv.2024.108377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 04/10/2024] [Accepted: 05/12/2024] [Indexed: 05/21/2024]
Abstract
Adenosine triphosphate (ATP) regeneration is a significant step in both living cells and in vitro biotransformation (ivBT). Rotary motor ATP synthases (ATPases), which regenerate ATP in living cells, have been widely assembled in biomimetic structures for in vitro ATP synthesis. In this review, we present a comprehensive overview of ATPases, including the working principle, orientation and distribution density properties of ATPases, as well as the assembly strategies and applications of ATPase-based ATP regeneration modules. The original sources of ATPases for in vitro ATP regeneration include chromatophores, chloroplasts, mitochondria, and inverted Escherichia coli (E. coli) vesicles, which are readily accessible but unstable. Although significant advances have been made in the assembly methods for ATPase-artificial membranes in recent decades, it remains challenging to replicate the high density and orientation of ATPases observed in vivo using in vitro assembly methods. The use of bioproton pumps or chemicals for constructing proton motive forces (PMF) enables the versatility and potential of ATPase-based ATP regeneration modules. Additionally, overall robustness can be achieved via membrane component selection, such as polymers offering great mechanical stability, or by constructing a solid supporting matrix through layer-by-layer assembly techniques. Finally, the prospects of ATPase-based ATP regeneration modules can be expected with the technological development of ATPases and artificial membranes.
Collapse
Affiliation(s)
- Lijing Chang
- Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; In vitro Synthetic Biology Center, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China
| | - Huijuan Cui
- Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; In vitro Synthetic Biology Center, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China
| | - Fei Li
- Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; In vitro Synthetic Biology Center, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China
| | - Yi-Heng P Job Zhang
- Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; In vitro Synthetic Biology Center, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Lingling Zhang
- Key Laboratory of Engineering Biology for Low-Carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; In vitro Synthetic Biology Center, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China.
| |
Collapse
|
2
|
Peirce S, Virgen-Ortíz JJ, Tacias-Pascacio VG, Rueda N, Bartolome-Cabrero R, Fernandez-Lopez L, Russo ME, Marzocchella A, Fernandez-Lafuente R. Development of simple protocols to solve the problems of enzyme coimmobilization. Application to coimmobilize a lipase and a β-galactosidase. RSC Adv 2016. [DOI: 10.1039/c6ra10906c] [Citation(s) in RCA: 86] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
The paper shows the coimmobilization of two enzymes using different immobilization strategies suitable for each enzyme and enabling the reuse of the most stable one.
Collapse
Affiliation(s)
- Sara Peirce
- Departamento de Biocatálisis
- Instituto de Catálisis-CSIC
- Madrid
- Spain
- Dipartimento di Ingegneria Chimica
| | | | - Veymar G. Tacias-Pascacio
- Departamento de Biocatálisis
- Instituto de Catálisis-CSIC
- Madrid
- Spain
- Unidad de Investigación y Desarrollo en Alimentos
| | - Nazzoly Rueda
- Departamento de Biocatálisis
- Instituto de Catálisis-CSIC
- Madrid
- Spain
- Escuela de Química
| | | | | | - Maria Elena Russo
- Istituto di Ricerche sulla Combustione – Consiglio Nazionale delle Ricerche
- Napoli
- Italy
| | - Antonio Marzocchella
- Dipartimento di Ingegneria Chimica
- dei Materiali e della Produzione Industriale
- Universita' degli Studi di Napoli Federico II
- Italy
| | | |
Collapse
|
3
|
Andexer JN, Richter M. Emerging enzymes for ATP regeneration in biocatalytic processes. Chembiochem 2015; 16:380-6. [PMID: 25619338 DOI: 10.1002/cbic.201402550] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Indexed: 12/15/2022]
Abstract
Adenosine-5'-triphosphate-dependent enzyme catalysed reactions are widespread in nature. Consequently, the enzymes involved have an intrinsic potential for use in syntheses of high value products. Although regeneration systems for ATP starting from adenosine-5'-diphosphate are available, certain limitations exist for both in vitro and in vivo applications requiring ATP regeneration from adenosine-5'-monophosphate, or adenosine. Following a short overview of the chemical and thermodynamic background, this Minireview focuses on emerging enzymes and methodologies for ATP regeneration. A large range of as yet unexploited reactions will be accessible with new, powerful, multistep ATP regeneration systems that use cheap phosphate donors and provide high longevity, compatibility, and robustness under process conditions. Their potential might go far beyond the direct use of ATP in enzymatic reactions; enzyme discovery, and engineering, as well as immobilisation strategies, will help to realise such systems.
Collapse
Affiliation(s)
- Jennifer N Andexer
- Institute of Pharmaceutical Sciences, University of Freiburg, Albertstrasse 25, 79104 Freiburg (Germany).
| | | |
Collapse
|
4
|
Ishikawa H, Shiroshima M, Widjaja A, Nakajima H, Tsurutani R. Kinetics and Mechanism of Acetate Kinase From Bacillus Stearothermophilus. JOURNAL OF CHEMICAL ENGINEERING OF JAPAN 1995. [DOI: 10.1252/jcej.28.517] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Haruo Ishikawa
- Department of Chemical Engineering, University of Osaka Prefecture
| | | | - Arief Widjaja
- Department of Chemical Engineering, University of Osaka Prefecture
| | - Hiroshi Nakajima
- Biochemistry Department, Unitika Research and Development Center
| | | |
Collapse
|
5
|
Smeds AL, Enfors SO. [64] Extraction of chromatophores. Methods Enzymol 1994. [DOI: 10.1016/0076-6879(94)28066-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
6
|
|
7
|
Ishikawa H, Tanaka T, Takase S, Hikita H. Theoretical analysis of G6P production and simultaneous ATP regeneration by conjugated enzymes in an ultrafiltration hollow-fiber reactor. Biotechnol Bioeng 1989; 34:357-68. [DOI: 10.1002/bit.260340309] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
8
|
Yamada H, Shimizu S. Microbial and Enzymatic Processes for the Production of Biologically and Chemically Useful Compounds [New Synthetic Methods (69)]. ACTA ACUST UNITED AC 1988. [DOI: 10.1002/anie.198806221] [Citation(s) in RCA: 152] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
9
|
Yamada H, Shimizu S. Mikrobielle und enzymatische Verfahren zur Produktion biologisch und chemisch wertvoller Verbindungen. Angew Chem Int Ed Engl 1988. [DOI: 10.1002/ange.19881000505] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
10
|
Larreta-Garde V, Thomas D. Factors controlling initial and long-term ATP regeneration catalyzed by immobilized chromatophores. Biotechnol Bioeng 1987; 29:79-84. [DOI: 10.1002/bit.260290112] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|
11
|
Smeds AL, Enfors SO. Stability of chromatophores during ATP regeneration in an enzyme reactor. Enzyme Microb Technol 1986. [DOI: 10.1016/0141-0229(86)90164-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
12
|
Smeds AL, Enfors SO. Extraction of chromatophores from Rhodospirillum rubrum in aqueous two-phase systems: A method for large-scale isolation of membrane particles. Enzyme Microb Technol 1985. [DOI: 10.1016/0141-0229(85)90028-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
13
|
Hattori K, Takahashi K, Sasao K. ATP and AMP formation from ADP in the presence of cyclodextrin. ACTA ACUST UNITED AC 1984. [DOI: 10.1007/bf00662236] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
14
|
Vandamme EJ. Peptide antibiotic production through immobilized biocatalyst technology. Enzyme Microb Technol 1983. [DOI: 10.1016/0141-0229(83)90021-2] [Citation(s) in RCA: 37] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
15
|
Flaschel E, Wandrey C, Kula MR. Ultrafiltration for the Separation of Biocatalysts. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 1983. [DOI: 10.1007/978-3-662-39694-0_2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
16
|
Smeds AL, Veide A, Enfors SO. Regeneration of ATP by chromatophores in aqueous two-phase systems. Enzyme Microb Technol 1983. [DOI: 10.1016/0141-0229(83)90061-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
17
|
|
18
|
Immobilized Organelles. ACTA ACUST UNITED AC 1983. [DOI: 10.1016/b978-0-12-041104-7.50010-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
|
19
|
Sawa Y, Kanayama K, Ochiai H. Photosynthetic regeneration of ATP using a strain of thermophilic blue-green algae. Biotechnol Bioeng 1982; 24:305-15. [DOI: 10.1002/bit.260240205] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
20
|
|
21
|
Matsuoka H, Suzuki S, Aizawa M. Stabilization of phosphorylating mitochondrial electron transport practicles and their use for ATP regeneration. Biotechnol Bioeng 1981. [DOI: 10.1002/bit.260230517] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
22
|
Larreta Garde V, Thomasset B, Tanaka A, Gellf G, Thomas D. Comparative stabilization of biological photosystems by several immobilization procedures. ACTA ACUST UNITED AC 1981. [DOI: 10.1007/bf00511250] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
23
|
Asada M, Yanamoto K, Nakanishi K, Matsuno R, Kimura A, Kamikubo T. Long term continuous ATP regeneration by enzymes of the alcohol fermentation pathway and kinases of yeast. ACTA ACUST UNITED AC 1981. [DOI: 10.1007/bf00499487] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
24
|
Paul F, Vignais P. Photophosphorylation in bacterial chromatophores entrapped in alginate gel: Improvement of the physical and biochemical properties of gel beads with barium as gel-inducing agent. Enzyme Microb Technol 1980. [DOI: 10.1016/0141-0229(80)90097-6] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
25
|
Cocquempot MF, Garde VL, Thomas D. Stabilization of biological photosystems : immobilization of thylakoids and chromatophores for hydrogen production and ATP regeneration. Biochimie 1980; 62:615-21. [PMID: 6774774 DOI: 10.1016/s0300-9084(80)80108-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Lettuce thylakoïds were immobilized by the action of glutaraldehyde at subzero temperature in the presence of albumin. Foam structures with good mechanical properties were obtained. The activity yields for photosystem II and photosystems I + II were found equal to 71 per cent and 35 per cent respectively. The yield for ATP regeneration from ADP and Pi was 26 per cent. Increases of stability after immobilization were observed for all the functions of thylakoïds when stored and when continuously working. Spheroplasts and chromatophores from Rhodopseudomonas capsulata were immobilized with the same method; yields for ATP regeneration were found equal to 40 per cent and 70 per cent, respectively. An important increase of stability after immobilization was observed in both cases.
Collapse
|
26
|
Brewer SJ, Taylor PM, Turner MK. An adenosine triphosphate-dependent carbamoylphosphate--3-hydroxymethylcephem O-carbamoyltransferase from Streptomyces clavuligerus. Biochem J 1980; 185:555-64. [PMID: 6248024 PMCID: PMC1161431 DOI: 10.1042/bj1850555] [Citation(s) in RCA: 38] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Cell-free supernatants from cells of Streptomyces clavuligerus (N.R.R.L. 3585), which are actively synthesizing cephamycin C, transfer a carbamoyl group from carbamoylphosphate to a 3-hydroxymethylceph-3-em-4-carboxylic acid nucleus to form a 3-carbamoyloxymethylcephem. This reaction was stimulated by nucleoside triphosphates and by a mixture of Mn2+ and Mg2+ cations. The enzyme responsible was purified 40-fold by batch absorption onto DEAE-cellulose and hydroxyapatite. The purified O-carbamoyltransferase is most active at pH 6.8. It is stabilized by phosphate anions, but is inhibited by PPi anions, (NH4)2SO4 or NaCl. The enzyme is stimulated by ATP, but it is not known whether this nucleotide acts as an effector or as a substrate. Some activity is observed with dATP, but two other analogues of ATP, in which a methylene group replaced the oxygen atom between the alpha- and beta- or the beta- and gamma-phosphorus atoms, inhibit the action of ATP itself. The enzyme synthesizes a wide range of 3-carbamoyloxymethylcephems. The structure of some of these products, for example that of cefuroxime (3-carbamoyloxymethyl-7 beta-[2-(fur-2-yl)-2-syn-methoxyiminoacetamido]ceph-3-em-4-carboxylic acid), was confirmed by their proton-n.m.r. spectra.
Collapse
|
27
|
Pace GW, Archer MC, Tannenbaum SR. Factors controlling ATP levels during photophosphorylation catalyzed by Rhodospirillum rubrum chromatophores. Appl Microbiol Biotechnol 1979. [DOI: 10.1007/bf00508099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
28
|
Yang HS, Archer MC. Adenylate kinase from Rhodospirillum rubrum. EXPERIENTIA 1978; 34:702. [PMID: 207554 DOI: 10.1007/bf01947268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A partial purification and some properties of adenylate kinase from the photosynthetic bacterium Rhodospirillum rubrum are described.
Collapse
|
29
|
Yang HS, Leung KH, Archer MC. Preparation and properties of bacterial chromatophores entrapped in polyacrylamide. Biotechnol Bioeng 1976; 18:1425-32. [PMID: 822898 DOI: 10.1002/bit.260181009] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The immobilization of Rhodospirillum rubrum chromatophores was successfully performed by entrapping them in polyacrylamide. Their photophosphorylating activity was about 40% of native chromatophores. The temperature and pH optima for immobilized chromatophores were similar to the native photosynthetic apparatus and kinetic parameters showed that the rate of photophosphorylation in polyacrylamide particles was diffusion controlled. Light penetration of the gel particles was not a limiting parameter. Immobilization considerably increased the stability of the chromatophores towards denaturation.
Collapse
|