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Shaikh S, Rashid N, Onwusogh U, McKay G, Mackey H. Effect of nutrients deficiency on biofilm formation and single cell protein production with a purple non-sulphur bacteria enriched culture. Biofilm 2023; 5:100098. [PMID: 36588982 PMCID: PMC9794892 DOI: 10.1016/j.bioflm.2022.100098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 11/27/2022] [Accepted: 12/03/2022] [Indexed: 12/23/2022] Open
Abstract
Purple non-sulphur bacteria (PNSB) are of interest for biorefinery applications to create biomolecules, but their production cost is expensive due to substrate and biomass separation costs. This research has utilized fuel synthesis wastewater (FSW) as a low-cost carbon-rich substrate to produce single-cell protein (SCP) and examines PNSB biofilm formation using this substrate to achieve a more efficient biomass-liquid separation. In this study, PNSB were grown in Ca, Mg, S, P, and N-deficient media using green shade as biofilm support material. Among these nutrient conditions, only N-deficient and control (nutrient-sufficient) conditions showed biofilm formation. Although total biomass growth of the control was 1.5 times that of the N-deficient condition and highest overall, the total biofilm-biomass in the N-deficient condition was 2.5 times greater than the control, comprising 49% of total biomass produced. Total protein content was similar between these four biomass samples, ranging from 35.0 ± 0.2% to 37.2 ± 0.0%. The highest protein content of 44.7 ± 1.3% occurred in the Mg-deficient condition (suspended biomass only) but suffered from a low growth rate. Overall, nutrient sufficient conditions are optimal for overall protein productivity and dominated by suspended growth, but where fixed growth systems are desired for cost-effective harvesting, N-deficient conditions provide an effective means to maximize biofilm production without sacrificing protein content.
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Affiliation(s)
- S. Shaikh
- Division of Sustainable Development, College of Science and Engineering, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - N. Rashid
- Division of Sustainable Development, College of Science and Engineering, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - U. Onwusogh
- Qatar Shell Research and Technology Centre, Tech 1, Qatar Science and Technology Park, Doha, Qatar
| | - G. McKay
- Division of Sustainable Development, College of Science and Engineering, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - H.R. Mackey
- Division of Sustainable Development, College of Science and Engineering, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
- Department of Civil and Natural Resources Engineering, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand
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Wang L, Zhang X, Tang C, Li P, Zhu R, Sun J, Zhang Y, Cui H, Ma J, Song X, Zhang W, Gao X, Luo X, You L, Chen Y, Dai Z. Engineering consortia by polymeric microbial swarmbots. Nat Commun 2022; 13:3879. [PMID: 35790722 PMCID: PMC9256712 DOI: 10.1038/s41467-022-31467-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 06/17/2022] [Indexed: 01/09/2023] Open
Abstract
Synthetic microbial consortia represent a new frontier for synthetic biology given that they can solve more complex problems than monocultures. However, most attempts to co-cultivate these artificial communities fail because of the winner-takes-all in nutrients competition. In soil, multiple species can coexist with a spatial organization. Inspired by nature, here we show that an engineered spatial segregation method can assemble stable consortia with both flexibility and precision. We create microbial swarmbot consortia (MSBC) by encapsulating subpopulations with polymeric microcapsules. The crosslinked structure of microcapsules fences microbes, but allows the transport of small molecules and proteins. MSBC method enables the assembly of various synthetic communities and the precise control over the subpopulations. These capabilities can readily modulate the division of labor and communication. Our work integrates the synthetic biology and material science to offer insights into consortia assembly and serve as foundation to diverse applications from biomanufacturing to engineered photosynthesis.
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Affiliation(s)
- Lin Wang
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Xi Zhang
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Chenwang Tang
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Pengcheng Li
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Runtao Zhu
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Jing Sun
- Soft Bio-interface Electronics Lab, Center of Neural Engineering, CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Artificial Intelligence and Robotics for Society, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Yunfeng Zhang
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Hua Cui
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Jiajia Ma
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, China
| | - Xinyu Song
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, China
| | - Weiwen Zhang
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, China
| | - Xiang Gao
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Xiaozhou Luo
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Lingchong You
- Department of Biomedical Engineering, Duke University, Durham, NC, 27708, USA
| | - Ye Chen
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Zhuojun Dai
- CAS Key Laboratory of Quantitative Engineering Biology, Center for Materials Synthetic Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China.
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Liu S, Li H, Daigger GT, Huang J, Song G. Material biosynthesis, mechanism regulation and resource recycling of biomass and high-value substances from wastewater treatment by photosynthetic bacteria: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 820:153200. [PMID: 35063511 DOI: 10.1016/j.scitotenv.2022.153200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 01/12/2022] [Accepted: 01/13/2022] [Indexed: 06/14/2023]
Abstract
The environmental-friendly and economic benefits generated from photosynthetic bacteria (PSB) wastewater treatment have attracted significant attention. This process of resource recovery can produce PSB biomass and high-value substances including single cell protein, Coenzyme Q10, polyhydroxyalkanoates (PHA), 5-aminolevulinic acid, carotenoids, bacteriocin, and polyhydroxy chain alkyl esters, etc. for application in various fields, such as agriculture, medical treatment, chemical, animal husbandry and food industry while treating wastewaters. The main contents of this review are summarized as follows: physiological characteristics, mechanism and application of PSB and potential of single cell protein (SCP) production are described; PSB wastewater treatment technology, including procedures and characteristics, typical cases, influencing factors and bioresource recovery by membrane bioreactor are detailed systematically. The future development of PSB-based resource recovery and wastewater treatment are also provided, particularly concerning PSB-membrane reactor (MBR) process, regulation of biosynthesis mechanism of high-value substances and downstream separation and purification technology. This will provide a promising and new alternative for wastewater treatment recycling.
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Affiliation(s)
- Shuli Liu
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China; Zhongzhou Water Holding Co., Ltd., Zhengzhou 450046, China; Civil and Environmental Engineering, University of Michigan, 2350 Hayward St, G.G. Brown Building, Ann Arbor, MI 48109, USA.
| | - Heng Li
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China
| | - Glen T Daigger
- Civil and Environmental Engineering, University of Michigan, 2350 Hayward St, G.G. Brown Building, Ann Arbor, MI 48109, USA
| | - Jianping Huang
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China.
| | - Gangfu Song
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China; Zhongzhou Water Holding Co., Ltd., Zhengzhou 450046, China
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Time scale analysis & characteristic times in microscale-based bio-chemical processes: Part II – Bioreactors with immobilized cells, and process flowsheet analysis. Chem Eng Sci 2021. [DOI: 10.1016/j.ces.2021.116499] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Hülsen T, Sander EM, Jensen PD, Batstone DJ. Application of purple phototrophic bacteria in a biofilm photobioreactor for single cell protein production: Biofilm vs suspended growth. WATER RESEARCH 2020; 181:115909. [PMID: 32492592 DOI: 10.1016/j.watres.2020.115909] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 05/01/2020] [Accepted: 05/02/2020] [Indexed: 06/11/2023]
Abstract
Single cell protein (SCP), has been proposed as alternative to effectively upgrade and recycle organics and nutrients from wastewater. Biomass recovery is a critical issue, and recovery as a biofilm is effective in comparison with sedimentation of suspended biomass. This study aims to determine the applicability of purple phototrophic bacteria (PPB) biofilm on infra-red irradiated, submerged surfaces for the treatment of pre-settled red meat processing wastewater, and SCP generation. PPB removed up to 66% of COD and 42% of TN and TP during batch operation with total areal productivities between 15 and 20 gVS m-2 d-1 achieved. More than 60% of the total biomass grew attached (as biofilm) with the remainder being suspended. The biofilm can be harvested at around 160 gTS L-1 with high protein (>96 g L-1) and low ash contents (>4.0% compared to >30% in the wastewater). The compositions of attached and suspended biomass differed significantly, where the suspended fraction resembled the wastewater composition (e.g. in terms of inert components). The PPB community was similar in the suspended and biofilm fractions while the biofilm had higher relative abundance of PPB representatives (57% vs 43%). A consistent product composition is highly relevant for the manufacturer and ultimately determines the value as feed, feed additive, or supplement.
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Affiliation(s)
- Tim Hülsen
- Advanced Water Management Centre, The University of Queensland, Gehrmann Building, Brisbane, Queensland, 4072, Australia.
| | - Elisa Marx Sander
- Advanced Water Management Centre, The University of Queensland, Gehrmann Building, Brisbane, Queensland, 4072, Australia
| | - Paul D Jensen
- Advanced Water Management Centre, The University of Queensland, Gehrmann Building, Brisbane, Queensland, 4072, Australia
| | - Damien J Batstone
- Advanced Water Management Centre, The University of Queensland, Gehrmann Building, Brisbane, Queensland, 4072, Australia
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Dexter J, Dziga D, Lv J, Zhu J, Strzalka W, Maksylewicz A, Maroszek M, Marek S, Fu P. Heterologous expression of mlrA in a photoautotrophic host - Engineering cyanobacteria to degrade microcystins. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 237:926-935. [PMID: 29454496 DOI: 10.1016/j.envpol.2018.01.071] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Revised: 01/15/2018] [Accepted: 01/21/2018] [Indexed: 05/08/2023]
Abstract
In this report, we establish proof-of-principle demonstrating for the first time genetic engineering of a photoautotrophic microorganism for bioremediation of naturally occurring cyanotoxins. In model cyanobacterium Synechocystis sp. PCC 6803 we have heterologously expressed Sphingopyxis sp. USTB-05 microcystinase (MlrA) bearing a 23 amino acid N-terminus secretion peptide from native Synechocystis sp. PCC 6803 PilA (sll1694). The resultant whole cell biocatalyst displayed about 3 times higher activity against microcystin-LR compared to a native MlrA host (Sphingomonas sp. ACM 3962), normalized for optical density. In addition, MlrA activity was found to be almost entirely located in the cyanobacterial cytosolic fraction, despite the presence of the secretion tag, with crude cellular extracts showing MlrA activity comparable to extracts from MlrA expressing E. coli. Furthermore, despite approximately 9.4-fold higher initial MlrA activity of a whole cell E. coli biocatalyst, utilization of a photoautotrophic chassis resulted in prolonged stability of MlrA activity when cultured under semi-natural conditions (using lake water), with the heterologous MlrA biocatalytic activity of the E. coli culture disappearing after 4 days, while the cyanobacterial host displayed activity (3% of initial activity) after 9 days. In addition, the cyanobacterial cell density was maintained over the duration of this experiment while the cell density of the E. coli culture rapidly declined. Lastly, failure to establish a stable cyanobacterial isolate expressing native MlrA (without the N-terminus tag) via the strong cpcB560 promoter draws attention to the use of peptide tags to positively modulate expression of potentially toxic proteins.
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Affiliation(s)
- Jason Dexter
- College of Life Science and Technology, Beijing University of Chemical Technology, 15, Beisanhuan East Road, Chaoyang District, Beijing 100029, China; Cyanoworks, LLC, 1771 Haskell Rd., Olean, NY 14760, USA.
| | - Dariusz Dziga
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 31-007 Kraków, Poland.
| | - Jing Lv
- New Energy Research Center, China University of Petroleum (Beijing), 18 Fuxue Road, Changping District, Beijing 102249, China.
| | - Junqi Zhu
- College of Life Science and Technology, Beijing University of Chemical Technology, 15, Beisanhuan East Road, Chaoyang District, Beijing 100029, China.
| | - Wojciech Strzalka
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 31-007 Kraków, Poland.
| | - Anna Maksylewicz
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 31-007 Kraków, Poland.
| | - Magdalena Maroszek
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 31-007 Kraków, Poland.
| | - Sylwia Marek
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 31-007 Kraków, Poland.
| | - Pengcheng Fu
- College of Life Science and Technology, Beijing University of Chemical Technology, 15, Beisanhuan East Road, Chaoyang District, Beijing 100029, China.
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Weiss TL, Young EJ, Ducat DC. A synthetic, light-driven consortium of cyanobacteria and heterotrophic bacteria enables stable polyhydroxybutyrate production. Metab Eng 2017; 44:236-245. [DOI: 10.1016/j.ymben.2017.10.009] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 09/28/2017] [Accepted: 10/16/2017] [Indexed: 10/18/2022]
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