1
|
Michielsen S, Vercelli GT, Cordero OX, Bachmann H. Spatially structured microbial consortia and their role in food fermentations. Curr Opin Biotechnol 2024; 87:103102. [PMID: 38461750 DOI: 10.1016/j.copbio.2024.103102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 02/14/2024] [Accepted: 02/14/2024] [Indexed: 03/12/2024]
Abstract
Microbial consortia are important for the fermentation of foods. They bring combined functionalities to the fermented product, but stability and product consistency of fermentations with complex consortia can be hard to control. Some of these consortia, such as water- and milk-kefir and kombucha, grow as multispecies aggregates or biofilms, in which micro-organisms taking part in a fermentation cascade are spatially organized. The spatial organization of micro-organisms in these aggregates can impact what metabolic interactions are realized in the consortia, ultimately affecting the growth dynamics and evolution of microbes. A better understanding of such spatially structured communities is of interest from the perspective of microbial ecology and biotechnology, as multispecies aggregates can be used to valorize energy-rich substrates, such as plant-based substrates or side streams from the food industry.
Collapse
Affiliation(s)
- Sabine Michielsen
- Systems Biology Lab, A-LIFE/AIMMS, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081HV Amsterdam, the Netherlands
| | - Gabriel T Vercelli
- Department of Civil and Environmental Engineering, 15 Vassar St, Cambridge, MA 02139, USA
| | - Otto X Cordero
- Department of Civil and Environmental Engineering, 15 Vassar St, Cambridge, MA 02139, USA
| | - Herwig Bachmann
- Systems Biology Lab, A-LIFE/AIMMS, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081HV Amsterdam, the Netherlands; Microbiology Department, NIZO Food Research, Ede, the Netherlands.
| |
Collapse
|
2
|
Llamas M, Greses S, Magdalena JA, González-Fernández C, Tomás-Pejó E. Microbial co-cultures for biochemicals production from lignocellulosic biomass: A review. BIORESOURCE TECHNOLOGY 2023; 386:129499. [PMID: 37460020 DOI: 10.1016/j.biortech.2023.129499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/12/2023] [Accepted: 07/15/2023] [Indexed: 07/31/2023]
Abstract
Global reliance on fossil oil should shift to cleaner alternatives to get a decarbonized society. One option to achieve this ambitious goal is the use of biochemicals produced from lignocellulosic biomass (LCB). The inherent low biodegradability of LCB and the inhibitory compounds that might be released during pretreatment are two main challenges for LCB valorization. At microbiological level, constraints are mostly linked to the need for axenic cultures and the preference for certain carbon sources (i.e., glucose). To cope with these issues, this review focuses on efficient LCB conversion via the sugar platform as well as an innovative carboxylate platform taking advantage of the co-cultivation of microorganisms. This review discusses novel trends in the use of microbial communities and co-cultures aiming at different bioproducts co-generation in single reactors as well as in sequential bioprocess combination. The outlook and further perspectives of these alternatives have been outlined for future successful development.
Collapse
Affiliation(s)
- Mercedes Llamas
- Biotechnological Processes Unit, IMDEA Energy, Madrid, Spain
| | - Silvia Greses
- Biotechnological Processes Unit, IMDEA Energy, Madrid, Spain
| | - Jose Antonio Magdalena
- LBE, Univ Montpellier, INRAE, 102 avenue des Étangs, F-11100 Narbonne, France; Vicerrectorado de Investigación y Transferencia de la Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Cristina González-Fernández
- Biotechnological Processes Unit, IMDEA Energy, Madrid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, Valladolid 47011, Spain; Institute of Sustainable Processes, Dr. Mergelina, s/n, Valladolid 47011, Spain
| | - Elia Tomás-Pejó
- Biotechnological Processes Unit, IMDEA Energy, Madrid, Spain.
| |
Collapse
|
3
|
Shi C, Ma J, Wu H, Luo J, Liu Y, Li K, Zhou Y, Wang K. Evaluation of pH regulation in carbohydrate-type municipal waste anaerobic co-fermentation: Roles of pH at acidic, neutral and alkaline conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 853:158327. [PMID: 36037891 DOI: 10.1016/j.scitotenv.2022.158327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 08/22/2022] [Accepted: 08/23/2022] [Indexed: 06/15/2023]
Abstract
This study investigated and evaluated the roles of acidic (pH 4.0), neutral (pH 7.0) and alkaline (pH 10.0) in anaerobic co-fermentation of sewage sludge and carbohydrate-type municipal waste. CO2, CH4 and H2 are produced in acidic, neutral and alkaline fermentation, respectively. The neutral co-fermentation contained the vast number of aqueous metabolites as total of 22.12 g/L, with the advantage of over 50 % biodegradable components in extracellular polymeric substance and over 80 % hydrolysis rate. Acidic and alkaline pH facilitated ammonia release, with the max concentration of 0.46 g/L and 0.44 g/L, respectively. Microbial analysis indicated that pH is the key parameter to impact microbial activity and drive microbial community transition. The high abundance of Lactobacillus, Bifidobacterium and Clostridium was associated with harvest of ethanol, lactic acid and acetate in acidic, neutral and alkaline fermentation. Meanwhile, the floc feature showed better dewaterability (zeta potential -8.48 mV) and poor nutrient convey (distribution spread index 1.03) in acidic fermentation. In summary, acidic and alkaline fermentation were prioritised for targeted spectrum. Neutral fermentation was prioritised for high production. This study presented an upgraded understanding of the pH role in fermentation performance, microbial structure and sludge behaviour, which benefits the development of fermentation processing unit.
Collapse
Affiliation(s)
- Chuan Shi
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environment Sciences, Beijing 100012, PR China; Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China
| | - Jinyuan Ma
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Houkai Wu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Juan Luo
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Yue Liu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Kun Li
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China
| | - Yuexi Zhou
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environment Sciences, Beijing 100012, PR China; Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China
| | - Kaijun Wang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, PR China.
| |
Collapse
|
4
|
Lv N, Zhang L, Yang Z, Wang H, Yang N, Li H. Label-free biological sample detection and non-contact separation system based on microfluidic chip. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:063104. [PMID: 35778042 DOI: 10.1063/5.0086109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 05/04/2022] [Indexed: 06/15/2023]
Abstract
The detection and separation of biological samples are of great significance for achieving accurate diagnoses and state assessments. Currently, the detection and separation of cells mostly adopt labeling methods, which will undoubtedly affect the original physiological state and functions of cells. Therefore, in this study, a label-free cell detection method based on microfluidic chips is proposed. By measuring the scattering of cells to identify cells and then using optical tweezers to separate the target cells, the whole process without any labeling and physical contact could realize automatic cell identification and separation. Different concentrations of 15 µm polystyrene microspheres and yeast mixed solution are used as samples for detection and separation. The detection accuracy is over 90%, and the separation accuracy is over 73%.
Collapse
Affiliation(s)
- Ning Lv
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| | - Lu Zhang
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| | - Zewen Yang
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| | - Huijun Wang
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| | - Nan Yang
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| | - Hao Li
- School of Mechanical Engineering, Xian Jiaotong University, Xian, Shannxi 710049, China
| |
Collapse
|
5
|
Tamis J, Joosse B, de Leeuw K, Kleerebezem R. High-rate ethanol production at low pH using the anaerobic granular sludge process. Biotechnol Bioeng 2021; 118:1943-1950. [PMID: 33547801 PMCID: PMC8251524 DOI: 10.1002/bit.27708] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 01/15/2021] [Accepted: 01/21/2021] [Indexed: 11/09/2022]
Abstract
In this study, we investigated the operational performance and product spectrum of glucose-fermenting anaerobic granular sludge reactor at pH 4. A selective environment for the growth of granules was implemented by the introduction of a 2 min settling phase, a hydraulic retention time of 6 h and a solid retention time of 12 ± 3 days. The fermentation products were ethanol, lactate, and volatile fatty acids (VFA) with yields of 0.55 ± 0.03, 0.15 ± 0.02, and 0.20 ± 0.04 gram chemical oxygen demand (gCOD)/gCOD glucose, respectively. The obtained product spectrum was remarkably different from the VFA-dominated product spectrum reported in a previous study when the same system was operated at higher pH (4.5-5.5). The shift in product spectrum coincided with a shift in the microbial community structure with the dominance of eukaryotic Candida tropicalis, Pichia jaroonii, and prokaryotic Lactobacillus species instead of the Clostridia species obtained at higher pH-values. The control of the microbiomes and the associated product spectra provides bioprocess engineers with the option to tailor a suitable precursor compound mixture for subsequent chain elongation fermentation or PHA biopolymer production.
Collapse
Affiliation(s)
- Jelmer Tamis
- Department of Emerging Technologies, Paques BV, Balk, The Netherlands.,Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Bart Joosse
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Kasper de Leeuw
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Robbert Kleerebezem
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| |
Collapse
|
6
|
Moscoviz R, Kleerebezem R, Rombouts JL. Directing carbohydrates toward ethanol using mesophilic microbial communities. Curr Opin Biotechnol 2021; 67:175-183. [PMID: 33588238 DOI: 10.1016/j.copbio.2021.01.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 01/12/2021] [Accepted: 01/20/2021] [Indexed: 12/14/2022]
Abstract
Bioethanol production is an established biotechnological process. Margins are low which prevent a larger scale production of bioethanol. As a large part of the production cost is due to the feedstock, the use of low value unsterile feedstocks fermented by microbial communities will enable a more cost-competitive bioethanol production. To select for high yield ethanol producing communities, three selective conditions are proposed: acid washing of the cells after fermentation, a low pH (<5) during the fermentation and microaerobiosis at the start of the fermentation. Ethanol producers, such as Zymomonas species and yeasts, compete for carbohydrates with volatile fatty acid and lactic acid producing bacteria. Creating effective consortia of lactic acid bacteria and homo-ethanol producers at low pH will lead to robust and competitive ethanol yields and titres. A conceptual design of an ecology-based bioethanol production process is proposed using food waste to produce bioethanol, electricity, digestate and heat.
Collapse
Affiliation(s)
- Roman Moscoviz
- SUEZ, Centre International de Recherche Sur l'Eau et l'Environnement (CIRSEE), 38 rue du Président Wilson, Le Pecq, France
| | - Robbert Kleerebezem
- Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | | |
Collapse
|