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Unniram Parambil AR, Pokratath R, Parammal MJ, Dhaene E, Van den Eynden D, Balog S, Prescimone A, Infante I, Shahgaldian P, De Roo J. Atomically precise surface chemistry of zirconium and hafnium metal oxo clusters beyond carboxylate ligands. Chem Sci 2024:d4sc03859b. [PMID: 39386907 PMCID: PMC11457152 DOI: 10.1039/d4sc03859b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 09/20/2024] [Indexed: 10/12/2024] Open
Abstract
The effectiveness of nanocrystals in many applications depends on their surface chemistry. Here, we leverage the atomically precise nature of zirconium and hafnium oxo clusters to gain fundamental insight into the thermodynamics of ligand binding. Through a combination of theoretical calculations and experimental spectroscopic techniques, we determine the interaction between the M6O8 8+ (M = Zr, Hf) cluster surface and various ligands: carboxylates, phosphonates, dialkylphosphinates, and monosubstituted phosphinates. We refute the common assumption that the adsorption energy of an adsorbate remains unaffected by the surrounding adsorbates. For example, dialkylphosphinic acids are too sterically hindered to yield complete ligand exchange, even though a single dialkylphosphinate has a high binding affinity. Monoalkyl or monoaryl phosphinic acids do replace carboxylates quantitatively and we obtained the crystal structure of M6O8H4(O2P(H)Ph)12 (M = Zr, Hf), giving insight into the binding mode of monosubstituted phosphinates. Phosphonic acids cause a partial structural reorganization of the metal oxo cluster into amorphous metal phosphonate as indicated by pair distribution function analysis. These results rationalize the absence of phosphonate-capped M6O8 clusters and the challenge in preparing Zr phosphonate metal-organic frameworks. We thus further reinforce the notion that monoalkylphosphinates are carboxylate mimics with superior binding affinity.
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Affiliation(s)
- Ajmal Roshan Unniram Parambil
- Institute of Chemistry and Bioanalytics, School of Life Sciences, University of Applied Sciences and Arts Northwestern Switzerland 4132 Muttenz Switzerland
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
- Swiss Nanoscience Institute Klingelbergstrasse 82 4056 Basel Switzerland
| | - Rohan Pokratath
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
| | | | - Evert Dhaene
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
| | - Dietger Van den Eynden
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
- Department of Chemistry, University of Ghent Krijgslaan 281 9000 Ghent Belgium
| | - Sandor Balog
- Adolphe Merkle Institute, University of Fribourg 1700 Fribourg Switzerland
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
| | | | - Patrick Shahgaldian
- Institute of Chemistry and Bioanalytics, School of Life Sciences, University of Applied Sciences and Arts Northwestern Switzerland 4132 Muttenz Switzerland
| | - Jonathan De Roo
- Department of Chemistry, University of Basel Mattenstrasse 22 4058 Basel Switzerland
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Declerck K, Savić ND, Moussawi MA, Seno C, Pokratath R, De Roo J, Parac-Vogt TN. Molecular Insights into Sequence-Specific Protein Hydrolysis by a Soluble Zirconium-Oxo Cluster Catalyst. J Am Chem Soc 2024. [PMID: 38621177 DOI: 10.1021/jacs.4c01324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
The development of catalysts for controlled fragmentation of proteins is a critical undertaking in modern proteomics and biotechnology. {Zr6O8}-based metal-organic frameworks (MOFs) have emerged as promising candidates for catalysis of peptide bond hydrolysis due to their high reactivity, stability, and recyclability. However, emerging evidence suggests that protein hydrolysis mainly occurs on the MOF surface, thereby questioning the need for their highly porous 3D nature. In this work, we show that the discrete and water-soluble [Zr6O4(OH)4(CH3CO2)8(H2O)2Cl3]+ (Zr6) metal-oxo cluster (MOC), which is based on the same hexamer motif found in various {Zr6O8}-based MOFs, shows excellent activity toward selective hydrolysis of equine skeletal muscle myoglobin. Compared to related Zr-MOFs, Zr6 exhibits superior reactivity, with near-complete protein hydrolysis after 24 h of incubation at 60 °C, producing seven selective fragments with a molecular weight in the range of 3-15 kDa, which are of ideal size for middle-down proteomics. The high solubility and molecular nature of Zr6 allow detailed solution-based mechanistic/interaction studies, which revealed that cluster-induced protein unfolding is a key step that facilitates hydrolysis. A combination of multinuclear nuclear magnetic resonance spectroscopy and pair distribution function analysis provided insight into the speciation of Zr6 and the ligand exchange processes occurring on the surface of the cluster, which results in the dimerization of two Zr6 clusters via bridging oxygen atoms. Considering the relevance of discrete Zr-oxo clusters as building blocks of MOFs, the molecular-level understanding reported in this work contributes to the further development of novel catalysts based on Zr-MOFs.
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Affiliation(s)
| | - Nada D Savić
- Department of Chemistry, KU Leuven, 3001 Leuven, Belgium
| | | | - Carlotta Seno
- Department of Chemistry, University of Basel, 4058 Basel, Switzerland
| | - Rohan Pokratath
- Department of Chemistry, University of Basel, 4058 Basel, Switzerland
| | - Jonathan De Roo
- Department of Chemistry, University of Basel, 4058 Basel, Switzerland
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Farwa U, Jung SH, Ryu JY, Pait M, Singh N, Cho S, Lee MH, Lee J. Selective formation of dinuclear and heptanuclear Zn(II), Ni(II), and Co(II) metal clusters from a simple dialdehyde. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Ashouri V, Adib K, Nasrabadi MR, Ghalkhani M. Preparation of the extruded UiO-66-based Metal-Organic Framework for the diazinon removal from the real samples. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130607] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Schmitz S, Izarova NV, van Leusen J, Kleemann K, Monakhov KY, Kögerler P. Expansion of Zirconium Oxide Clusters by 3d/4f Ions. Inorg Chem 2021; 60:11599-11608. [PMID: 34289690 DOI: 10.1021/acs.inorgchem.1c01526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Two series of charge-neutral coordination clusters featuring quasi-isostructural metal oxide cores, isolated as [Zr6Fe2Ln2O8(ib)14(bda)2(NO3)2]·xMeCN (Ln = La (1), Ce (2), Pr (3), and Nd (4); ib- = isobutyrate; H2bda = N-butyldiethanolamine) and [Zr6Fe2Ln2O8(ib)14(mda)2(NO3)2]·xMeCN (Ln = La (5), Ce (6), Pr (7), and Nd (8); H2mda = N-methyldiethanolamine), were obtained via one-pot reactions of [Fe3O(ib)6(H2O)3]NO3 as a critical precursor, Ln(NO3)3·6H2O (Ln = La, Ce, Pr, and Nd), the respective aminoalcohol, and [Zr6O4(OH)4(ib)12(H2O)]·3Hib in an acetonitrile solution. The coordination clusters in 1-8 feature {Zr6O8} cores that are structurally expanded by two 4f (Ln3+) and two 3d (Fe3+) metal ions, each individually coordinated to one of the eight oxide centers of {Zr6O8}, producing a metal skeleton where the 3d/4f positions cap four of the triangular faces of the central Zr6 octahedron. The coordination clusters differ in the chosen aminoalcohol coligands, N-butyldiethanolamine or N-methyldiethanolamine, which lead to a different isobutyrate coordination pattern in the two series, while the {Fe2Ln2Zr6O8} core structure remains virtually unaffected. All eight coordination clusters are obtained in moderate to good yields of 29-66% after only several days. Complexes 1-8 are stable against air and moisture; they are also surprisingly thermally stable up to 280 °C in air and in nitrogen atmosphere, and they represent the first reported examples of 3d/4f-functionalized zirconium oxide clusters.
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Affiliation(s)
- Sebastian Schmitz
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany.,Leibniz Institute of Surface Engineering, Permoserstraße 15, 04318 Leipzig, Germany
| | - Natalya V Izarova
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany.,Jülich-Aachen Research Alliance and Peter Grünberg Institute, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Jan van Leusen
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Kevin Kleemann
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Kirill Yu Monakhov
- Leibniz Institute of Surface Engineering, Permoserstraße 15, 04318 Leipzig, Germany
| | - Paul Kögerler
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany.,Jülich-Aachen Research Alliance and Peter Grünberg Institute, Forschungszentrum Jülich, 52425 Jülich, Germany
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