1
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Marquês JT, Frazão De Faria C, Reis M, Machado D, Santos S, Santos MDS, Viveiros M, Martins F, De Almeida RFM. In vitro Evaluation of Isoniazid Derivatives as Potential Agents Against Drug-Resistant Tuberculosis. Front Pharmacol 2022; 13:868545. [PMID: 35600870 PMCID: PMC9114799 DOI: 10.3389/fphar.2022.868545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 04/08/2022] [Indexed: 11/13/2022] Open
Abstract
The upsurge of multidrug-resistant tuberculosis has toughened the challenge to put an end to this epidemic by 2030. In 2020 the number of deaths attributed to tuberculosis increased as compared to 2019 and newly identified multidrug-resistant tuberculosis cases have been stably close to 3%. Such a context stimulated the search for new and more efficient antitubercular compounds, which culminated in the QSAR-oriented design and synthesis of a series of isoniazid derivatives active against Mycobacterium tuberculosis. From these, some prospective isonicotinoyl hydrazones and isonicotinoyl hydrazides are studied in this work. To evaluate if the chemical derivatizations are generating compounds with a good performance concerning several in vitro assays, their cytotoxicity against human liver HepG2 cells was determined and their ability to bind human serum albumin was thoroughly investigated. For the two new derivatives presented in this study, we also determined their lipophilicity and activity against both the wild type and an isoniazid-resistant strain of Mycobacterium tuberculosis carrying the most prevalent mutation on the katG gene, S315T. All compounds were less cytotoxic than many drugs in clinical use with IC50 values after a 72 h challenge always higher than 25 µM. Additionally, all isoniazid derivatives studied exhibited stronger binding to human serum albumin than isoniazid itself, with dissociation constants in the order of 10−4–10−5 M as opposed to 10−3 M, respectively. This suggests that their transport and half-life in the blood stream are likely improved when compared to the parent compound. Furthermore, our results are a strong indication that the N′ = C bond of the hydrazone derivatives of INH tested is essential for their enhanced activity against the mutant strain of M. tuberculosis in comparison to both their reduced counterparts and INH.
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Affiliation(s)
- Joaquim Trigo Marquês
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Catarina Frazão De Faria
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Marina Reis
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
- Instituto Superior de Educação e Ciências (ISEC Lisboa), Lisboa, Portugal
| | - Diana Machado
- Unidade de Microbiologia Medica, Global Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal
| | - Susana Santos
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Maria da Soledade Santos
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Miguel Viveiros
- Unidade de Microbiologia Medica, Global Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal
| | - Filomena Martins
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
- *Correspondence: Filomena Martins, ; Rodrigo F. M. De Almeida,
| | - Rodrigo F. M. De Almeida
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
- *Correspondence: Filomena Martins, ; Rodrigo F. M. De Almeida,
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2
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Perera NLD, Miksovska J, O'Shea KE. Elucidation of specific binding sites and extraction of toxic Gen X from HSA employing cyclodextrin. JOURNAL OF HAZARDOUS MATERIALS 2022; 425:127765. [PMID: 34838360 DOI: 10.1016/j.jhazmat.2021.127765] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 11/08/2021] [Accepted: 11/09/2021] [Indexed: 06/13/2023]
Abstract
The presence of per and poly-fluoroalkyl substances (PFAS), commonly referred to as forever chemicals, in aquatic systems is a serious global health problem. While the remediation of PFAS from aqueous media has been extensively investigated, their interactions with and removal from biological systems have received far less attention. We report herein structural alterations to human serum albumin (HSA) upon addition of perfluoro(2-methyl-3-oxahexanoic) acid (Gen X) monitored by changes to the fluorescence and circular dichroism (CD) spectra of HSA. The equilibrium association constant for Gen X binding to HSA is 7( ± 1) × 103 M-1 determined from changes in HSA fluorescence emission data during titration. Site-specific HSA binding fluorophores, 8-anilinonaphthalene-1-sulfonic acid (1,8-ANS), warfarin and dansyl-L-proline were used to investigate the specific binding sites of Gen X on HSA. A competitive displacement study yields association constants for Gen X to HSA at the 1,8-ANS, warfarin, and dansyl-L-proline binding sites to be 6.25 ( ± 0.5) × 104 M-1, 1.1 × 106 M-1, and 2.5( ± 0.2) × 109 M-1 respectively. Addition of β-cyclodextrin (β-CD) and heptakis(6-deoxy-6-amino)-β-cyclodextrin heptahydrochloride to the HSA:Gen X complex leads to the effective extraction of Gen X from the complex with the return of HSA in its native form. Gen X also leads to displacement of site-specific binding fluorophores bound to HSA, while subsequent addition of β-CD extracts Gen X from HSA with the return of the characteristic fluorescence of the HSA bound site-specific agent. These results illustrate the strong and specific binding sites of Gen X on HSA and demonstrate the principles for the potential application of β-CD for the remediation of PFAS from biological systems.
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Affiliation(s)
- N L Dilani Perera
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th street, Miami, FL 33199, United States
| | - Jaroslava Miksovska
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th street, Miami, FL 33199, United States
| | - Kevin E O'Shea
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th street, Miami, FL 33199, United States.
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3
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Guzzi R, Bartucci R. Interactive multiple binding of oleic acid, warfarin and ibuprofen with human serum albumin revealed by thermal and fluorescence studies. EUROPEAN BIOPHYSICS JOURNAL : EBJ 2022; 51:41-49. [PMID: 35048131 DOI: 10.1007/s00249-021-01582-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 11/23/2021] [Accepted: 12/04/2021] [Indexed: 06/14/2023]
Abstract
Human serum albumin binds a wide variety of drugs with different structure and affinity to two main binding sites, drug site 1 (DS1) and drug site 2 (DS2), which partially or totally overlap with fatty acid (FA) sites. Although multiple binding sites are available for endogenous compounds, FAs are the primary physiological ligands of albumin and their competition in the occupancy of DS1 and DS2 affects the binding of exogenous molecules, with a possible impact on drug delivery. In this work, we have investigated the simultaneous binding of oleic acid, warfarin and ibuprofen to albumin using differential scanning calorimetry and fluorescence to evaluate the impact on the conformational stability of the protein. The two drugs are widely used for their anticoagulant (warfarin) and anti-inflammatory (ibuprofen) properties, and can be also considered as site markers to probe DS1 and DS2, respectively. Oleic acid is one of the most important fatty acids from a physiological point of view for its role as a source of energy for cells, and also it binds albumin with the highest association constant. When complexed with oleic acid the calorimetric profile of albumin shows a biphasic trend whose line shape depends on the ligand concentration. The binding capacity of either warfarin or ibuprofen to albumin is modulated by oleate molecules in a concentration-dependent mode being synergic cooperative (warfarin) or competitive-like (ibuprofen). The overall results provide insights on the dynamics of albumin/ligands complex, which in turn may have important pharmacokinetic and pharmacodynamic implications.
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Affiliation(s)
- Rita Guzzi
- Department of Physics, Molecular Biophysics Laboratory, University of Calabria, 87036, Rende, Italy.
- CNR-NANOTEC, Licryl-UOS Cosenza and CEMIF.Cal, Department of Physics, University of Calabria, 87036, Rende, Italy.
| | - Rosa Bartucci
- Department of Physics, Molecular Biophysics Laboratory, University of Calabria, 87036, Rende, Italy
- Department of Chemistry and Chemical Technologies, University of Calabria, 87036, Rende, Italy
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4
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Rybicka-Jasińska K, Derr JB, Vullev VI. What defines biomimetic and bioinspired science and engineering? PURE APPL CHEM 2021. [DOI: 10.1515/pac-2021-0323] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Abstract
Biomimicry, biomimesis and bioinspiration define distinctly different approaches for deepening the understanding of how living systems work and employing this knowledge to meet pressing demands in engineering. Biomimicry involves shear imitation of biological structures that most often do not reproduce the functionality that they have while in the living organisms. Biomimesis aims at reproduction of biological structure-function relationships and advances our knowledge of how different components of complex living systems work. Bioinspiration employs this knowledge in abiotic manners that are optimal for targeted applications. This article introduces and reviews these concepts in a global historic perspective. Representative examples from charge-transfer science and solar-energy engineering illustrate the evolution from biomimetic to bioinspired approaches and show their importance. Bioinspired molecular electrets, aiming at exploration of dipole effects on charge transfer, demonstrate the pintail impacts of biological inspiration that reach beyond its high utilitarian values. The abiotic character of bioinspiration opens doors for the emergence of unprecedented properties and phenomena, beyond what nature can offer.
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Affiliation(s)
| | - James B. Derr
- Department of Biochemistry , University of California , Riverside , CA , 92521 , USA
| | - Valentine I. Vullev
- Department of Biochemistry , University of California , Riverside , CA , 92521 , USA
- Department of Bioengineering , University of California , Riverside , CA , 92521 , USA
- Department of Chemistry , University of California , Riverside , CA , 92521 , USA
- Materials Science and Engineering Program , University of California , Riverside , CA , 92521 , USA
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5
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Xiao Z, Zhang Y, Niu Y, Ke Q, Kou X. Cyclodextrins as carriers for volatile aroma compounds: A review. Carbohydr Polym 2021; 269:118292. [PMID: 34294318 DOI: 10.1016/j.carbpol.2021.118292] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/20/2021] [Accepted: 05/31/2021] [Indexed: 12/12/2022]
Abstract
Cyclodextrins (CDs) are edible and biocompatible natural cyclic compounds that can encapsulate essential oils, flavours, volatile aroma compounds, and other substances. Complexation with CD-based materials improves the solubility and stability of volatile compounds and protects the bioactivity of the core materials. Therefore, the development of CD/volatile compound nanosystems is a key research area in the food, cosmetic, and pharmaceutical industries. This review briefly introduces the main types of natural CD; preparation methods of CD-based materials as carriers for aromatic substances or essential oils; characterisation methods used to calculate the interaction between CDs and volatile aroma compounds; molecular docking and simulation methods; and the application of CD-based nanosystems in different industries. The review aims to provide guidance for relevant practitioners in selecting appropriate CD materials and characterisation methods.
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Affiliation(s)
- Zuobing Xiao
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, China
| | - Yaqi Zhang
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, China
| | - Yunwei Niu
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, China
| | - Qinfei Ke
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, China
| | - Xingran Kou
- School of Perfume and Aroma Technology, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, China; Key Laboratory of Textile Science & Technology, Ministry of Education, College of Textiles, Donghua University, Shanghai 201620, China.
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6
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Sakpal SS, Ghosh D, Manae MA, Hazra A, Bagchi S. The Curious Case of Aqueous Warfarin: Structural Isomers or Distinct Excited States? J Phys Chem B 2021; 125:2871-2878. [PMID: 33728913 DOI: 10.1021/acs.jpcb.0c10824] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Warfarin is a potent anti-coagulant drug and is on the World Health Organization's List of Essential Medicines. Additionally, it displays fluorescence enhancement upon binding to human serum albumin, making warfarin a prototype fluorescent probe in biology. Despite its biological significance, the current structural assignment of warfarin in aqueous solution is based on indirect evidence in organic solvents. Warfarin is known to exist in different isomeric forms-open-chain, hemiketal, and anionic forms-based on the solvent and pH. Moreover, warfarin displays a dual absorption feature in several solvents, which has been employed to study the ring-chain isomerism between its open-chain and hemiketal isomers. In this study, our pH-dependent experiments on warfarin and structurally constrained warfarin derivatives in aqueous solution demonstrate that the structural assignment of warfarin solely on the basis of its absorption spectrum is erroneous. Using a combination of steady-state and time-resolved spectroscopic experiments, along with quantum chemical calculations, we assign the observed dual absorption to two distinct π → π* transitions in the 4-hydroxycoumarin moiety of warfarin. Furthermore, we unambiguously identify the isomeric form of warfarin that binds to human serum albumin in aqueous buffer.
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Affiliation(s)
- Sushil S Sakpal
- Physical and Materials Chemistry Division, CSIR-National Chemical Laboratory, Pune 411008, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Deborin Ghosh
- Physical and Materials Chemistry Division, CSIR-National Chemical Laboratory, Pune 411008, India
| | - Meghna A Manae
- Department of Chemistry, Indian Institute of Science Education and Research, Pune 411008, India
| | - Anirban Hazra
- Department of Chemistry, Indian Institute of Science Education and Research, Pune 411008, India
| | - Sayan Bagchi
- Physical and Materials Chemistry Division, CSIR-National Chemical Laboratory, Pune 411008, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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7
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Sultan MA, Abou El-Alamin MM, Wark AW, Azab MM. Detection and quantification of warfarin in pharmaceutical dosage form and in spiked human plasma using surface enhanced Raman scattering. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 228:117533. [PMID: 31753661 DOI: 10.1016/j.saa.2019.117533] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 08/21/2019] [Accepted: 09/13/2019] [Indexed: 06/10/2023]
Abstract
Analytical approaches for the quantitation of warfarin in plasma are high in demand. In this study, a novel surface enhanced Raman scattering (SERS) technique for the quantification of the widely used anticoagulant warfarin sodium in pharmaceutical dosage form and in spiked human plasma was developed. The colloidal-based SERS measurements were carefully optimized considering the laser wavelength, the type of metal nanoparticles, their surface functionalization and concentration as well as the time required for warfarin to associate with the metal surface. Poly(diallyldimethylammonium chloride) coated silver nanoparticles (PDDA-AgNPs) were established as a substrate which greatly enhanced the weak warfarin Raman signal with high reproducibility. The limit of detection was calculated in both water and human plasma to be 0.56 nM (0.17 ngmL-1) and 0.25 nM (0.08 ngmL-1) respectively, with a high degree of accuracy and reproducibility. The proposed method is simple, economical, and easily applied for routine application requiring only small plasma samples and also could be potentially useful for pharmacokinetic research on warfarin.
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Affiliation(s)
- Maha A Sultan
- Analytical Chemistry Department, Faculty of Pharmacy, Helwan University, 11795, Cairo, Egypt
| | - Maha M Abou El-Alamin
- Analytical Chemistry Department, Faculty of Pharmacy, Helwan University, 11795, Cairo, Egypt
| | - Alastair W Wark
- Centre for Molecular Nanometrology, Dept. of Pure & Applied Chemistry, Technology and Innovation Centre, 99 George St, University of Strathclyde, Glasgow, G1 1RD, UK
| | - Marwa M Azab
- Analytical Chemistry Department, Faculty of Pharmacy, Helwan University, 11795, Cairo, Egypt; Centre for Molecular Nanometrology, Dept. of Pure & Applied Chemistry, Technology and Innovation Centre, 99 George St, University of Strathclyde, Glasgow, G1 1RD, UK.
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8
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Warfarin increases thermal resistance of albumin through stabilization of the protein lobe that includes its binding site. Arch Biochem Biophys 2019; 676:108123. [DOI: 10.1016/j.abb.2019.108123] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 09/27/2019] [Accepted: 09/30/2019] [Indexed: 01/11/2023]
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9
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Popiołek I, Niziołek A, Kamiński K, Kwolek U, Nowakowska M, Szczubiałka K. Cellular delivery and enhanced anticancer activity of berberine complexed with a cationic derivative of γ–cyclodextrin. Bioorg Med Chem 2019; 27:1414-1420. [DOI: 10.1016/j.bmc.2019.02.042] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Revised: 02/18/2019] [Accepted: 02/20/2019] [Indexed: 12/24/2022]
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10
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Pourkarim F, Rahimpour E, Khoubnasabjafari M, Jouyban-Gharamaleki V, Jouyban A. Direct Monitoring of Verapamil Level in Exhaled Breath Condensate Samples. PHARMACEUTICAL SCIENCES 2019. [DOI: 10.15171/ps.2019.8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
Background: In this research, an enhanced fluorimetric assay was developed for the direct monitoring of verapamil in exhaled breath condensate (EBC). The method is based on a binding–induced rigidity inside the sodium dodecyl sulfate (SDS) micelle which eliminate collisional quenching and vibrational modes responsible for non-radiative decay. This process produces an enhancement in the emission intensity of verapamil. Methods: Fluorescence intensity measurements were made at 15 ˚C on a FP-750 spectrofluorometer with maximum excitation and emission wavelengths of 280 nm and 310 nm, respectively. The important parameters influencing the analytical signal in experimental steps were investigated and optimized. The method was validated with considering of the linearity, recovery and limit of detection. Results: Under the optimized experimental conditions, the calibration graph was linear in the range of 0.02 − 12.0 µg.mL−1 of verapamil with a detection limit of 0.008 µg.mL–1. Conclusion: The proposed method was found to be suitable and accurate for the determination of verapamil and the validated method was successfully used for analysis of verapamil in EBC of patients receiving verapamil with the satisfactory results.
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Affiliation(s)
- Fariba Pourkarim
- Student Research Committee, Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Elaheh Rahimpour
- Pharmaceutical Analysis Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Maryam Khoubnasabjafari
- Tuberculosis and Lung Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Vahid Jouyban-Gharamaleki
- Liver and Gastrointestinal Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Abolghasem Jouyban
- Pharmaceutical Analysis Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran
- Kimia Idea Pardaz Azarbayjan (KIPA) Science Based Company, Tabriz University of Medical Sciences, Tabriz, Iran
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11
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Espinoza EM, Clark JA, Derr JB, Bao D, Georgieva B, Quina FH, Vullev VI. How Do Amides Affect the Electronic Properties of Pyrene? ACS OMEGA 2018; 3:12857-12867. [PMID: 31458010 PMCID: PMC6644773 DOI: 10.1021/acsomega.8b01581] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 09/24/2018] [Indexed: 05/12/2023]
Abstract
The electronic properties of amide linkers, which are intricate components of biomolecules, offer a wealth of unexplored possibilities. Herein, we demonstrate how the different modes of attaching an amide to a pyrene chromophore affect the electrochemical and optical properties of the chromophore. Thus, although they cause minimal spectral shifts, amide substituents can improve either the electron-accepting or electron-donating capabilities of pyrene. Specifically, inversion of the amide orientation shifts the reduction potentials by 200 mV. These trends indicate that, although amides affect to a similar extent the energies of the ground and singlet excited states of pyrene, the effects on the doublet states of its radical ions are distinctly different. This behavior reflects the unusually strong orientation dependence of the resonance effects of amide substituents, which should extend to amide substituents on other types of chromophores in general. These results represent an example where the Hammett sigma constants fail to predict substituent effects on electrochemical properties. On the other hand, Swain-Lupton parameters are found to be in good agreement with the observed trends. Examination of the frontier orbitals of the pyrene derivatives and their components reveals the underlying reason for the observed amide effects on the electronic properties of this polycyclic aromatic hydrocarbon and points to key molecular-design strategies for electronic and energy-conversion systems.
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Affiliation(s)
- Eli M. Espinoza
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
- Instituto
de Química, Universidade de São
Paulo, Avenida Lineu
Prestes 748, Cidade Universitária, São
Paulo 05508-000, Brazil
| | - John A. Clark
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
| | - James B. Derr
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
| | - Duoduo Bao
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
| | - Boriana Georgieva
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
| | - Frank H. Quina
- Instituto
de Química, Universidade de São
Paulo, Avenida Lineu
Prestes 748, Cidade Universitária, São
Paulo 05508-000, Brazil
- E-mail: (F.H.Q.)
| | - Valentine I. Vullev
- Department
of Chemistry, Department of Bioengineering, Department of Biochemistry, and Materials Science
and Engineering Program, University of California, Riverside, California 92521, United States
- E-mail: (V.I.V.)
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12
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Derr JB, Tamayo J, Espinoza EM, Clark JA, Vullev VI. Dipole-induced effects on charge transfer and charge transport. Why do molecular electrets matter? CAN J CHEM 2018. [DOI: 10.1139/cjc-2017-0389] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Charge transfer (CT) and charge transport (CTr) are at the core of life-sustaining biological processes and of processes that govern the performance of electronic and energy-conversion devices. Electric fields are invaluable for guiding charge movement. Therefore, as electrostatic analogues of magnets, electrets have unexplored potential for generating local electric fields for accelerating desired CT processes and suppressing undesired ones. The notion about dipole-generated local fields affecting CT has evolved since the middle of the 20th century. In the 1990s, the first reports demonstrating the dipole effects on the kinetics of long-range electron transfer appeared. Concurrently, the development of molecular-level designs of electric junctions has led the exploration of dipole effects on CTr. Biomimetic molecular electrets such as polypeptide helices are often the dipole sources in CT systems. Conversely, surface-charge electrets and self-assembled monolayers of small polar conjugates are the preferred sources for modifying interfacial electric fields for controlling CTr. The multifaceted complexity of such effects on CT and CTr testifies for the challenges and the wealth of this field that still remains largely unexplored. This review outlines the basic concepts about dipole effects on CT and CTr, discusses their evolution, and provides accounts for their future developments and impacts.
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Affiliation(s)
- James B. Derr
- Department of Biochemistry, University of California, Riverside, CA 92521, USA
| | - Jesse Tamayo
- Department of Chemistry, University of California, Riverside, CA 92521, USA
| | - Eli M. Espinoza
- Department of Chemistry, University of California, Riverside, CA 92521, USA
| | - John A. Clark
- Department of Bioengineering, University of California, Riverside, CA 92521, USA
| | - Valentine I. Vullev
- Department of Biochemistry, University of California, Riverside, CA 92521, USA
- Department of Chemistry, University of California, Riverside, CA 92521, USA
- Department of Bioengineering, University of California, Riverside, CA 92521, USA
- Materials Science and Engineering Program, University of California, Riverside, CA 92521, USA
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13
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Espinoza EM, Larsen-Clinton JM, Krzeszewski M, Darabedian N, Gryko DT, Vullev VI. Bioinspired approach toward molecular electrets: synthetic proteome for materials. PURE APPL CHEM 2017. [DOI: 10.1515/pac-2017-0309] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
AbstractMolecular-level control of charge transfer (CT) is essential for both, organic electronics and solar-energy conversion, as well as for a wide range of biological processes. This article provides an overview of the utility of local electric fields originating from molecular dipoles for directing CT processes. Systems with ordered dipoles, i.e. molecular electrets, are the centerpiece of the discussion. The conceptual evolution from biomimicry to biomimesis, and then to biological inspiration, paves the roads leading from testing the understanding of how natural living systems function to implementing these lessons into optimal paradigms for specific applications. This progression of the evolving structure-function relationships allows for the development of bioinspired electrets composed of non-native aromatic amino acids. A set of such non-native residues that are electron-rich can be viewed as a synthetic proteome for hole-transfer electrets. Detailed considerations of the electronic structure of an individual residue prove of key importance for designating the points for optimal injection of holes (i.e. extraction of electrons) in electret oligomers. This multifaceted bioinspired approach for the design of CT molecular systems provides unexplored paradigms for electronic and energy science and engineering.
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Affiliation(s)
- Eli M. Espinoza
- Department of Chemistry, University of California, Riverside, CA 92521, USA
| | | | - Maciej Krzeszewski
- Department of Bioengineering, University of California, Riverside, CA 92521, USA
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44-52, 01-224 Warsaw, Poland
| | - Narek Darabedian
- Department of Bioengineering, University of California, Riverside, CA 92521, USA
| | - Daniel T. Gryko
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44-52, 01-224 Warsaw, Poland
| | - Valentine I. Vullev
- Department of Chemistry, University of California, Riverside, CA 92521, USA
- Department of Bioengineering, University of California, Riverside, CA 92521, USA
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14
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Sequestration Effect on the Open-Cyclic Switchable Property of Warfarin Induced by Cyclodextrin: Time-Resolved Fluorescence Study. Molecules 2017; 22:molecules22081326. [PMID: 28800107 PMCID: PMC6152132 DOI: 10.3390/molecules22081326] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 08/06/2017] [Accepted: 08/08/2017] [Indexed: 11/17/2022] Open
Abstract
The excited-state lifetimes of the anticoagulant drug warfarin (W) in water and in the absence and presence of methyl-β-cyclodextrins (Me-β-CD) were recorded using time-resolved fluorescence measurements. Selective excitation of the open and cyclic protonated isomers of W were acquired with laser emitting diodes (LED) producing 320 and 280 nm excitation pulses, respectively. Formation of the inclusion complex was checked by UV-visible absorption spectroscopy, and the values of binding constants (2.9 × 10³ M-1 and 4.2 × 10² M-1 for protonated and deprotonated forms, respectively) were extracted from the spectrophotometric data. Both absorption and time-resolved fluorescence results established that the interior of the macromolecular host binds preferentially the open protonated form, red shifts the maximum of its absorption of light at ~305 nm, extends its excited-state lifetime, and decreases its emission quantum yield (ФF). Collectively, sequestration of the open guest molecules decreases markedly their radiative rate constants (kr), likely due to formation of hydrogen-bonded complexes in both the ground and excited states. Due to lack of interactions, no change was observed in the excited-state lifetime of the cyclic form in the presence of Me-β-CD. The host also increases the excited-state lifetime and ФF of the drug deprotonated form (W-). These later findings could be attributed to the increased rigidity inside the cavity of Me-β-CD. The pKa values extracted from the variations of the UV-visible absorption spectra of W versus the pH of aqueous solution showed that the open isomer is more acidic in both ground and excited states. The positive shifts in pKa values induced by three derivatives of cyclodextrins: HE-β-CD, Ac-β-CD, and Me-β-CD supported the preferential binding of these hosts to open isomers over cyclic.
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15
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Espinoza EM, Xia B, Darabedian N, Larsen JM, Nuñez V, Bao D, Mac JT, Botero F, Wurch M, Zhou F, Vullev VI. Nitropyrene Photoprobes: Making Them, and What Are They Good for? European J Org Chem 2015. [DOI: 10.1002/ejoc.201501339] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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16
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Dolinina ES, Vorobyeva EV, Parfenyuk EV. Development of novel delivery system for warfarin based on mesoporous silica: adsorption characteristics of silica materials for the anticoagulant. Pharm Dev Technol 2015; 21:546-53. [DOI: 10.3109/10837450.2015.1098662] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Ekaterina S. Dolinina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, Ivanovo, Russia
| | - Evgeniya V. Vorobyeva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, Ivanovo, Russia
| | - Elena V. Parfenyuk
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, Ivanovo, Russia
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17
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Dar AA, Chat OA. Cosolubilization of Coumarin30 and Warfarin in Cationic, Anionic, and Nonionic Micelles: A Micelle–Water Interfacial Charge Dependent FRET. J Phys Chem B 2015; 119:11632-42. [DOI: 10.1021/jp511978h] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Aijaz Ahmad Dar
- Department of Chemistry, University of Kashmir, Srinagar-190006, Jammu and Kashmir India
| | - Oyais Ahmad Chat
- Department of Chemistry, University of Kashmir, Srinagar-190006, Jammu and Kashmir India
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18
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Larsen JM, Espinoza EM, Hartman JD, Lin CK, Wurch M, Maheshwari P, Kaushal RK, Marsella MJ, Beran GJO, Vullev VI. Building blocks for bioinspired electrets: molecular-level approach to materials for energy and electronics. PURE APPL CHEM 2015. [DOI: 10.1515/pac-2015-0109] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractIn biology, an immense diversity of protein structural and functional motifs originates from only 20 common proteinogenic native amino acids arranged in various sequences. Is it possible to attain the same diversity in electronic materials based on organic macromolecules composed of non-native residues with different characteristics? This publication describes the design, preparation and characterization of non-native aromatic β-amino acid residues, i.e. derivatives of anthranilic acid, for polyamides that can efficiently mediate hole transfer. Chemical derivatization with three types of substituents at two positions of the aromatic ring allows for adjusting the energy levels of the frontier orbitals of the anthranilamide residues over a range of about one electronvolt. Most importantly, the anthranilamide residues possess permanent electric dipoles, adding to the electronic properties of the bioinspired conjugates they compose, making them molecular electrets.
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Affiliation(s)
- Jillian M. Larsen
- 1Department of Bioengineering, University of California, Riverside, CA, 92507, USA
| | - Eli M. Espinoza
- 2Department of Chemistry, University of California, Riverside, CA, 92507, USA
| | - Joshua D. Hartman
- 2Department of Chemistry, University of California, Riverside, CA, 92507, USA
| | - Chung-Kuang Lin
- 1Department of Bioengineering, University of California, Riverside, CA, 92507, USA
| | - Michelle Wurch
- 1Department of Bioengineering, University of California, Riverside, CA, 92507, USA
| | - Payal Maheshwari
- 1Department of Bioengineering, University of California, Riverside, CA, 92507, USA
| | - Raman K. Kaushal
- 1Department of Bioengineering, University of California, Riverside, CA, 92507, USA
| | - Michael J. Marsella
- 2Department of Chemistry, University of California, Riverside, CA, 92507, USA
| | - Gregory J. O. Beran
- 2Department of Chemistry, University of California, Riverside, CA, 92507, USA
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19
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Upadhyayula S, Nuñez V, Espinoza EM, Larsen JM, Bao D, Shi D, Mac JT, Anvari B, Vullev VI. Photoinduced dynamics of a cyanine dye: parallel pathways of non-radiative deactivation involving multiple excited-state twisted transients. Chem Sci 2015; 6:2237-2251. [PMID: 29449923 PMCID: PMC5701728 DOI: 10.1039/c4sc02881c] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Accepted: 02/09/2015] [Indexed: 12/11/2022] Open
Abstract
Cyanine dyes are broadly used for fluorescence imaging and other photonic applications. 3,3'-Diethylthiacyanine (THIA) is a cyanine dye composed of two identical aromatic heterocyclic moieties linked with a single methine, -CH[double bond, length as m-dash]. The torsional degrees of freedom around the methine bonds provide routes for non-radiative decay, responsible for the inherently low fluorescence quantum yields. Using transient absorption spectroscopy, we determined that upon photoexcitation, the excited state relaxes along two parallel pathways producing three excited-state transients that undergo internal conversion to the ground state. The media viscosity impedes the molecular modes of ring rotation and preferentially affects one of the pathways of non-radiative decay, exerting a dominant effect on the emission properties of THIA. Concurrently, the polarity affects the energy of the transients involved in the decay pathways and further modulates the kinetics of non-radiative deactivation.
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Affiliation(s)
- Srigokul Upadhyayula
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
| | - Vicente Nuñez
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Eli M Espinoza
- Department of Chemistry , University of California , Riverside , CA 92521 , USA
| | - Jillian M Larsen
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Duoduo Bao
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Dewen Shi
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Jenny T Mac
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
| | - Bahman Anvari
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Valentine I Vullev
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
- Department of Chemistry , University of California , Riverside , CA 92521 , USA
- Materials Science and Engineering Program , University of California , Riverside , CA 92521 , USA
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20
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Mura P. Analytical techniques for characterization of cyclodextrin complexes in aqueous solution: A review. J Pharm Biomed Anal 2014; 101:238-50. [DOI: 10.1016/j.jpba.2014.02.022] [Citation(s) in RCA: 172] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2014] [Accepted: 02/17/2014] [Indexed: 11/26/2022]
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21
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Bao D, Upadhyayula S, Larsen JM, Xia B, Georgieva B, Nuñez V, Espinoza EM, Hartman JD, Wurch M, Chang A, Lin CK, Larkin J, Vasquez K, Beran GJO, Vullev VI. Dipole-mediated rectification of intramolecular photoinduced charge separation and charge recombination. J Am Chem Soc 2014; 136:12966-73. [PMID: 25162490 DOI: 10.1021/ja505618n] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Controlling charge transfer at a molecular scale is critical for efficient light harvesting, energy conversion, and nanoelectronics. Dipole-polarization electrets, the electrostatic analogue of magnets, provide a means for "steering" electron transduction via the local electric fields generated by their permanent electric dipoles. Here, we describe the first demonstration of the utility of anthranilamides, moieties with ordered dipoles, for controlling intramolecular charge transfer. Donor-acceptor dyads, each containing a single anthranilamide moiety, distinctly rectify both the forward photoinduced electron transfer and the subsequent charge recombination. Changes in the observed charge-transfer kinetics as a function of media polarity were consistent with the anticipated effects of the anthranilamide molecular dipoles on the rectification. The regioselectivity of electron transfer and the molecular dynamics of the dyads further modulated the observed kinetics, particularly for charge recombination. These findings reveal the underlying complexity of dipole-induced effects on electron transfer and demonstrate unexplored paradigms for molecular rectifiers.
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Affiliation(s)
- Duoduo Bao
- Department of Bioengineering, ‡Department of Biochemistry, §Department of Chemistry, and ∥Materials Science and Engineering Program, University of California , Riverside, California 92521, United States
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22
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Datta S, Halder M. Effect of encapsulation in the anion receptor pocket of sub-domain IIA of human serum albumin on the modulation of pKa of warfarin and structurally similar acidic guests: A possible implication on biological activity. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2014; 130:76-85. [DOI: 10.1016/j.jphotobiol.2013.10.013] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 10/03/2013] [Accepted: 10/19/2013] [Indexed: 01/01/2023]
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23
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Nuñez V, Upadhyayula S, Millare B, Larsen JM, Hadian A, Shin S, Vandrangi P, Gupta S, Xu H, Lin AP, Georgiev GY, Vullev VI. Microfluidic Space-Domain Time-Resolved Emission Spectroscopy of Terbium(III) and Europium(III) Chelates with Pyridine-2,6-Dicarboxylate. Anal Chem 2013; 85:4567-77. [DOI: 10.1021/ac400200x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Vicente Nuñez
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Srigokul Upadhyayula
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
- Department of Biochemistry, University of California, Riverside, California 92521,
United States
| | - Brent Millare
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Jillian M. Larsen
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Ali Hadian
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Sanghoon Shin
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Prashanthi Vandrangi
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Sharad Gupta
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Hong Xu
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Adam P. Lin
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Georgi Y. Georgiev
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
| | - Valentine I. Vullev
- Department of Bioengineering
and Center for Bioengineering Research, University of California, Riverside, California 92521, United States
- Department of Biochemistry, University of California, Riverside, California 92521,
United States
- Department
of Chemistry, University of California,
Riverside, California 92521,
United States
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24
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Zhang L, Zhou J, Zhang L. Structure and properties of β-cyclodextrin/cellulose hydrogels prepared in NaOH/urea aqueous solution. Carbohydr Polym 2013; 94:386-93. [PMID: 23544553 DOI: 10.1016/j.carbpol.2012.12.077] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2012] [Revised: 12/08/2012] [Accepted: 12/31/2012] [Indexed: 11/16/2022]
Abstract
β-Cyclodextrin (β-CD)/cellulose hydrogels were prepared in NaOH/urea aqueous solution by crosslinking with epichlorohydrin. The structure and morphology of the hydrogels were characterized with Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), scanning electron microscopy (SEM). The swelling test, 5-fluorouracil (5-FU) and bovine serum albumin (BSA), and aniline blue (AnB) were used to investigate the swelling capability, drug release behavior and the fluorescent property of the hydrogels. The results indicated that the swelling degree and water uptake of the hydrogels decreased with an increase of the β-CD content. The in vitro release of 5-FU and BSA of the hydrogels showed an inclusion complex formed between 5-FU and β-CD. β-CD/cellulose hydrogels adsorbed AnB lead to a fluorescence enhancement attributing to the formation of the host-guest complex between β-CD and AnB.
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Affiliation(s)
- Lingzhi Zhang
- Department of Chemistry, Wuhan University, Wuhan 430072, China
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25
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Xia B, Bao D, Upadhyayula S, Jones G, Vullev VI. Anthranilamides as bioinspired molecular electrets: experimental evidence for a permanent ground-state electric dipole moment. J Org Chem 2013; 78:1994-2004. [PMID: 23270467 DOI: 10.1021/jo301942g] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
As electrostatic equivalents of magnets, organic electrets offer unparalleled properties for impacting energy conversion and electronic applications. While biological systems have evolved to efficiently utilize protein α-helices as molecular electrets, the synthetic counterparts of these conjugates still remain largely unexplored. This paper describes a study of the electronic properties of anthranilamide oligomers, which proved to be electrets based on their intrinsic dipole moments as evident from their spectral and dielectric properties. NMR studies provided the means for estimating the direction of the intrinsic electric dipoles of these conjugates. This study sets the foundation for the development of a class of organic materials that are de novo designed from biomolecular motifs and possess unexplored electronic properties.
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Affiliation(s)
- Bing Xia
- Department of Bioengineering, University of California, Riverside, California 92521, United States
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26
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Upadhyayula S, Quinata T, Bishop S, Gupta S, Johnson NR, Bahmani B, Bozhilov K, Stubbs J, Jreij P, Nallagatla P, Vullev VI. Coatings of polyethylene glycol for suppressing adhesion between solid microspheres and flat surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:5059-69. [PMID: 22364506 DOI: 10.1021/la300545v] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
This article describes the development and the examination of surface coatings that suppress the adhesion between glass surfaces and polymer microspheres. Superparamagnetic doping allowed for exerting magnetic forces on the microbeads. The carboxyl functionalization of the polymer provided the means for coating the beads with polyethylene glycol (PEG) with different molecular weight. Under gravitational force, the microbeads settled on glass surfaces with similar polymer coatings. We examined the efficacy of removing the beads from the glass surfaces by applying a pulling force of ~1.2 pN. The percent beads remaining on the surface after applying the pulling force for approximately 5 s served as an indication of the adhesion propensity. Coating of PEG with molecular weight ranging between 3 and 10 kDa was essential for suppressing the adhesion. For the particular substrates, surface chemistry and aqueous media we used, coatings of 5 kDa manifested optimal suppression of adhesion: that is, only 3% of the microbeads remained on the surface after applying the pulling magnetic force. When either the glass or the beads were not PEGylated, the adhesion between them was substantial. Addition of a noncharged surfactant, TWEEN, above its critical micelle concentrations (CMCs) suppressed the adhesion between noncoated substrates. The extent of this surfactant-induced improvement of the adhesion suppression, however, did not exceed the quality of preventing the adhesion that we attained by PEGylating both substrates. In addition, the use of surfactants did not significantly improve the suppression of bead-surface adhesion when both substrates were PEGylated. These findings suggest that such surfactant additives tend to be redundant and that covalently grafted coatings of PEGs with selected chain lengths provide sufficient suppression of nonspecific interfacial interactions.
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Affiliation(s)
- Srigokul Upadhyayula
- Department of Bioengineering, University of California, Riverside, California 91521, United States
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27
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Upadhyayula S, Bao D, Millare B, Sylvia SS, Habib KMM, Ashraf K, Ferreira A, Bishop S, Bonderer R, Baqai S, Jing X, Penchev M, Ozkan M, Ozkan CS, Lake RK, Vullev VI. Permanent electric dipole moments of carboxyamides in condensed media: what are the limitations of theory and experiment? J Phys Chem B 2011; 115:9473-90. [PMID: 21682315 DOI: 10.1021/jp2045383] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Electrostatic properties of proteins are crucial for their functionality. Carboxyamides are small polar groups that, as peptide bonds, are principal structural components of proteins that govern their electrostatic properties. We investigated the medium dependence of the molar polarization and of the permanent dipole moments of amides with different state of alkylation. The experimentally measured and theoretically calculated dipole moments manifested a solvent dependence that increased with the increase in the media polarity. We ascribed the observed enhancement of the amide polarization to the reaction fields in the solvated cavities. Chloroform, for example, caused about a 25% increase in the amide dipole moments determined for vacuum, as the experimental and theoretical results demonstrated. Another chlorinated solvent, 1,1,2,2-tetrachloroethane, however, caused an "abnormal" increase in the experimentally measured amide dipoles, which the theoretical approaches we used could not readily quantify. We showed and discussed alternatives for addressing such discrepancies between theory and experiment.
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Affiliation(s)
- Srigokul Upadhyayula
- Department of Bioengineering, University of California, Riverside, California 92521, United States
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28
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Abstract
Bacterial endospores are some of the most resilient forms of life known to us, with their persistent survival capability resulting from a complex and effective structural organization. The outer membrane of endospores is surrounded by the densely packed endospore coat and exosporium, containing amyloid or amyloid-like proteins. In fact, it is the impenetrable composition of the endospore coat and the exosporium that makes staining methodologies for endospore detection complex and challenging. Therefore, a plausible strategy for facile and expedient staining would be to target components of the protective surface layers of the endospores. Instead of targeting endogenous markers encapsulated in the spores, here we demonstrated staining of these dormant life entities that targets the amyloid domains, i.e., the very surface components that make the coats of these species impenetrable. Using an amyloid staining dye, thioflavin T (ThT), we examined this strategy. A short incubation of bacillus endospore suspensions with ThT, under ambient conditions, resulted in (i) an enhancement of the fluorescence of ThT and (ii) the accumulation of ThT in the endospores, affording fluorescence images with excellent contrast ratios. Fluorescence images revealed that ThT tends to accumulate in the surface regions of the endospores. The observed fluorescence enhancement and dye accumulation, coupled with the sensitivity of emission techniques, provide an effective and rapid means of staining endospores without the inconvenience of pre- or posttreatment of samples.
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29
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Nicholls IA, Karlsson BCG, Rosengren AM, Henschel H. Warfarin: an environment-dependent switchable molecular probe. J Mol Recognit 2010; 23:604-8. [DOI: 10.1002/jmr.1058] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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30
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Thomas MS, Nuñez V, Upadhyayula S, Zielins ER, Bao D, Vasquez JM, Bahmani B, Vullev VI. Kinetics of bacterial fluorescence staining with 3,3'-diethylthiacyanine. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:9756-9765. [PMID: 20481488 DOI: 10.1021/la1013279] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
For more than a century, colorimetric and fluorescence staining have been the foundation of a broad range of key bioanalytical techniques. The dynamics of such staining processes, however, still remains largely unexplored. We investigated the kinetics of fluorescence staining of two gram-negative and two gram-positive species with 3,3'-diethylthiacyanine (THIA) iodide. An increase in the THIA fluorescence quantum yield, induced by the bacterial dye uptake, was the principal reason for the observed emission enhancement. The fluorescence quantum yield of THIA depended on the media viscosity and not on the media polarity, which suggested that the microenvironment of the dye molecules taken up by the cells was restrictive. The kinetics of fluorescence staining did not manifest a statistically significant dependence neither on the dye concentration, nor on the cell count. In the presence of surfactant additives, however, the fluorescence-enhancement kinetic patterns manifested species specificity with statistically significant discernibility.
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Affiliation(s)
- Marlon S Thomas
- Department of Bioengineering, University of California, Riverside, California 92521, USA
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31
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Bao D, Ramu S, Contreras A, Upadhyayula S, Vasquez JM, Beran G, Vullev VI. Electrochemical Reduction of Quinones: Interfacing Experiment and Theory for Defining Effective Radii of Redox Moieties. J Phys Chem B 2010; 114:14467-79. [DOI: 10.1021/jp101730e] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Duoduo Bao
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Sangeetha Ramu
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Antonio Contreras
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Srigokul Upadhyayula
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Jacob M. Vasquez
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Gregory Beran
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
| | - Valentine I. Vullev
- Department of Bioengineering, University of California, Riverside, California 92521, Center for Bioengineering Research, University of California, Riverside, California 92521, and Department of Chemistry, University of California, Riverside, California 92521
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32
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Green TK, Denoroy L, Parrot S. Fluorescence Enhancement of a Meisenheimer Complex of Adenosine by γ-Cyclodextrin: A Thermodynamic and Kinetic Investigation. J Org Chem 2010; 75:4048-55. [DOI: 10.1021/jo1003357] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Thomas K. Green
- Department of Chemistry & Biochemistry, Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska 99775
| | - Luc Denoroy
- Laboratoire de Neuropharmacologie, EAC CNRS 5006, Université Lyon 1, F-69373 Lyon Cedex 08, France
- NeuroChem, Institut Fédératif des Neurosciences de Lyon, Université de Lyon, F-69373 Lyon, France
| | - Sandrine Parrot
- NeuroChem, Institut Fédératif des Neurosciences de Lyon, Université de Lyon, F-69373 Lyon, France
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33
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Fluorescent Fe(II) metallo-supramolecular polymers: metal-ion-directed self-assembly of new bisterpyridines containing triethylene glycol chains. Polym J 2010. [DOI: 10.1038/pj.2010.3] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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