1
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Zhu L, Chang Y, Li Y, Qiao M, Liu L. Biosensors Based on the Binding Events of Nitrilotriacetic Acid-Metal Complexes. BIOSENSORS 2023; 13:bios13050507. [PMID: 37232868 DOI: 10.3390/bios13050507] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/27/2023]
Abstract
Molecular immobilization and recognition are two key events for the development of biosensors. The general ways for the immobilization and recognition of biomolecules include covalent coupling reactions and non-covalent interactions of antigen-antibody, aptamer-target, glycan-lectin, avidin-biotin and boronic acid-diol. Tetradentate nitrilotriacetic acid (NTA) is one of the most common commercial ligands for chelating metal ions. The NTA-metal complexes show high and specific affinity toward hexahistidine tags. Such metal complexes have been widely utilized in protein separation and immobilization for diagnostic applications since most of commercialized proteins have been integrated with hexahistidine tags by synthetic or recombinant techniques. This review focused on the development of biosensors with NTA-metal complexes as the binding units, mainly including surface plasmon resonance, electrochemistry, fluorescence, colorimetry, surface-enhanced Raman scattering spectroscopy, chemiluminescence and so on.
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Affiliation(s)
- Lin Zhu
- College of Chemistry and Chemical Engineering, Anyang Normal University, Anyang 455000, China
| | - Yong Chang
- College of Chemistry and Chemical Engineering, Anyang Normal University, Anyang 455000, China
| | - Yingying Li
- College of Chemistry and Chemical Engineering, Anyang Normal University, Anyang 455000, China
| | - Mingyi Qiao
- College of Chemistry and Chemical Engineering, Anyang Normal University, Anyang 455000, China
| | - Lin Liu
- College of Chemistry and Chemical Engineering, Anyang Normal University, Anyang 455000, China
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2
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Yu D, Wang N, Gong Y, Wu Z, Wang W, Wang L, Wu F, Jiang L. Screening of active sites and study on immobilization of Bacillus cereus phospholipase C. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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3
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Long J, Li X, Liu X, Jin Z, Xie Z, Xu X, Lu C. Preparation of Streptavidin-Coated Magnetic Nanoparticles for Specific Immobilization of Enzymes with High Activity and Enhanced Stability. Ind Eng Chem Res 2021. [DOI: 10.1021/acs.iecr.0c03281] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Jie Long
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Xingfei Li
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Xiaoxiao Liu
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Zhengyu Jin
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Zhengjun Xie
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Xueming Xu
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Cheng Lu
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
- School of Bioengineering, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
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4
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Lühmann T, Jones G, Gutmann M, Rybak JC, Nickel J, Rubini M, Meinel L. Bio-orthogonal Immobilization of Fibroblast Growth Factor 2 for Spatial Controlled Cell Proliferation. ACS Biomater Sci Eng 2015; 1:740-746. [DOI: 10.1021/acsbiomaterials.5b00236] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tessa Lühmann
- Institute
of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany
| | - Gabriel Jones
- Institute
of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany
| | - Marcus Gutmann
- Institute
of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany
| | - Jens-Christoph Rybak
- Institute
of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany
| | - Joachim Nickel
- Chair
of Tissue Engineering and Regenerative Medicine, University Hospital of Wuerzburg, Roentgenring 11, 97070 Wuerzburg Germany
- Translational
Center “Regenerative Therapies in Oncology and Musculoskeletal
Diseases” Wuerzburg, Branch of the Fraunhofer Institute Interfacial Engineering and Biotechnology (IGB), Wuerzburg, Germany
| | - Marina Rubini
- Institute
of Organic Chemistry, University of Konstanz, Konstanz, Germany
| | - Lorenz Meinel
- Institute
of Pharmacy and Food Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany
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5
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Kaur M, Roberts S, Healy J, Domigan L, Vasudevamurthy M, Gerrard JA, Sasso L. Crystallin Nanofibrils: A Functionalizable Nanoscaffold with Broad Applications Manufactured from Waste. Chempluschem 2015; 80:810-819. [DOI: 10.1002/cplu.201500033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2015] [Indexed: 12/20/2022]
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6
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Tang Z, Luan Y, Li D, Du H, Haddleton DM, Chen H. Surface immobilization of a protease through an inhibitor-derived affinity ligand: a bioactive surface with defensive properties against an inhibitor. Chem Commun (Camb) 2015; 51:14263-6. [DOI: 10.1039/c5cc05652g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Surface immobilization of a protease through its inhibitor-derived peptide was shown to be advantageous in retaining the enzymatic activity of the protease and protecting the protease from being inhibited by its inhibitor.
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Affiliation(s)
- Zengchao Tang
- College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University
- Suzhou 215123
- P. R. China
| | - Yafei Luan
- College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University
- Suzhou 215123
- P. R. China
| | - Dan Li
- College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University
- Suzhou 215123
- P. R. China
| | - Hui Du
- College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University
- Suzhou 215123
- P. R. China
| | | | - Hong Chen
- College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University
- Suzhou 215123
- P. R. China
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7
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Seo JS, Poulter CD. Sandwich antibody arrays using recombinant antibody-binding protein L. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:6629-6635. [PMID: 24841983 PMCID: PMC4059220 DOI: 10.1021/la500822w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Revised: 05/16/2014] [Indexed: 06/01/2023]
Abstract
Antibody arrays are a useful for detecting antigens and other antibodies. This technique typically requires a uniform and well-defined orientation of antibodies attached to a surface for optimal performance. A uniform orientation can be achieved by modification of antibodies to include a single site for attachment. Thus, uniformly oriented antibody arrays require a bioengineered modification for the antibodies directly immobilization on the solid surface. In this study, we describe a "sandwich-type" antibody array where unmodified antibodies are oriented through binding with regioselectively immobilized recombinant antibody-binding protein L. Recombinant proL-CVIA bearing C-terminal CVIA motif is post-translationally modified with an alkyne group by protein farnesyltransferase (PFTase) at the cysteine residue in the CVIA sequence to give proL-CVIApf, which is covalently attached to an azido-modified glass slide by a Huisgen [3 + 2] cycloaddition reaction. Slides bearing antibodies bound to slides coated with regioselectively immobilized proL-CVIApf gave stronger fluorescence outputs and those where the antibody-binding protein was immobilized in random orientations on an epoxy-modified slide. Properly selected capture and detection antibodies did not cross-react with immobilized proL-CVIApf in sandwich arrays, and the proL-CVIApf slides can be used for multiple cycles of detected over a period of several months.
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8
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Steen Redeker E, Ta DT, Cortens D, Billen B, Guedens W, Adriaensens P. Protein Engineering For Directed Immobilization. Bioconjug Chem 2013; 24:1761-77. [DOI: 10.1021/bc4002823] [Citation(s) in RCA: 143] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Erik Steen Redeker
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
| | - Duy Tien Ta
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
| | - David Cortens
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
| | - Brecht Billen
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
| | - Wanda Guedens
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
| | - Peter Adriaensens
- Biomolecule Design Group
(BDG), Institute for Materials Research (IMO), Chemistry Division, Hasselt University, Agoralaan
Building D, 3590 Diepenbeek, Belgium
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9
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Steinhagen M, Zunker K, Nordsieck K, Beck-Sickinger AG. Large scale modification of biomolecules using immobilized sortase A from Staphylococcus aureus. Bioorg Med Chem 2013; 21:3504-10. [PMID: 23598248 DOI: 10.1016/j.bmc.2013.03.039] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2012] [Revised: 03/02/2013] [Accepted: 03/11/2013] [Indexed: 01/24/2023]
Abstract
Recently, sortase A (SrtA) from Staphyloccus aureus moved into the focus of bioscience because of its ability to incorporate site specific modifications into proteins. The enzyme was mostly used to modify target proteins in an analytical scale, to study biomolecules in their cellular context. In this study, we show the applicability of SrtA mediated ligation for site specific modification of proteins in a large scale. Therefore, the reaction was first optimized using peptides and subsequently new reaction conditions were applied for the large scale biotinylation of interleukin-8. Furthermore, we established C-terminal immobilization of the SrtA on a PEG based resin and could demonstrate maintaining enzymatic activity. Immobilized SrtA significantly facilitates previous ligation protocols as the enzyme can be easily recycled. Also, the removal of excess reaction solution and the whole washing process is significantly accelerated, as centrifugation or filtration techniques can be applied instead of time-consuming chromatography steps.
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Affiliation(s)
- Max Steinhagen
- Institute of Biochemistry, Faculty of Biosciences, Pharmacy and Psychology, Universität Leipzig, Brüderstr. 34, 04103 Leipzig, Germany.
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10
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Soleimani M, Khani A, Dalali N, Behbehani GR. Improvement in the Cleaning Performance Towards Protein Soils in Laundry Detergents by Protease Immobilization on the Silica Nanoparticles. J SURFACTANTS DETERG 2012. [DOI: 10.1007/s11743-012-1397-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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11
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Braddick LM, Garland PJ, Praeger MF, Butement J, Friedrich D, Morgan DJ, Melvin T. Uniform aligned bioconjugation of biomolecule motifs for integration within microfabricated microfluidic devices. Anal Biochem 2012; 424:195-205. [DOI: 10.1016/j.ab.2012.02.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2011] [Revised: 02/07/2012] [Accepted: 02/16/2012] [Indexed: 11/26/2022]
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12
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Yu CC, Kuo YY, Liang CF, Chien WT, Wu HT, Chang TC, Jan FD, Lin CC. Site-Specific Immobilization of Enzymes on Magnetic Nanoparticles and Their Use in Organic Synthesis. Bioconjug Chem 2012; 23:714-24. [DOI: 10.1021/bc200396r] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ching-Ching Yu
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Yu-Ying Kuo
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Chien-Fu Liang
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Wei-Ting Chien
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Huan-Ting Wu
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Tsung-Che Chang
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Fan-Dan Jan
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
| | - Chun-Cheng Lin
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang Fu Rd. Hsinchu, 30013,
Taiwan
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13
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López-Gallego F, Acebrón I, Mancheño JM, Raja S, Lillo MP, Guisán Seijas JM. Directed, strong, and reversible immobilization of proteins tagged with a β-trefoil lectin domain: a simple method to immobilize biomolecules on plain agarose matrixes. Bioconjug Chem 2012; 23:565-73. [PMID: 22372708 DOI: 10.1021/bc2006237] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A highly stable lipase from Geobacillus thermocatenolatus (BTL2) and the enhanced green fluorescent protein from Aquorea victoria (EGFP) were recombinantly produced N-terminally tagged to the lectin domain of the hemolytic pore-forming toxin LSLa from the mushroom Laetiporus sulphureus . Such a domain (LSL(150)), recently described as a novel fusion tag, is based on a β-trefoil scaffold with two operative binding sites for galactose or galactose-containing derivatives. The fusion proteins herein analyzed have enabled us to characterize the binding mode of LSL(150) to polymeric and solid substrates such as agarose beads. The lectin-fusion proteins are able to be quantitatively bound to both cross-linked and non-cross-linked agarose matrixes in a very rapid manner, resulting in a surprisingly dynamic protein distribution inside the porous beads that evolves from heterogeneous to homogeneous along the postimmobilization time. Such dynamic distribution can be related to the reversible nature of the LSL(150)-agarose interaction. Furthermore, this latter interaction is temperature dependent since it is 4-fold stronger when the immobilization takes place at 25 °C than when it does at 4 °C. The strongest lectin-agarose interaction is also quite stable under a survey of different conditions such as high temperatures (up to 60 °C) or high organic solvent concentrations (up to 60% of acetonitrile). Notably, the use of cross-linked agarose would endow the system with more robustness due to its better mechanical properties compared to the noncross-linked one. The stability of the LSL(150)-agarose interaction would prevent protein leaching during the operation process unless high pH media are used. In summary, we believe that the LSL(150) lectin domain exhibits interesting structural features as an immobilization domain that makes it suitable to reversibly immobilize industrially relevant enzymes in very simple carriers as agarose.
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Affiliation(s)
- Fernando López-Gallego
- Departamento de Biocatálisis, Instituto de Catálisis, CSIC, Campus UAM, Cantoblanco 28049, Madrid, Spain
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14
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Chien W, Liang C, Yu C, Lin JH, Wu H, Lin C. Glucose 1‐Phosphate Thymidylyltransferase in the Synthesis of Uridine 5′‐Diphosphate Galactose and its Application in the Synthesis ofN‐Acetyllactosamine. Adv Synth Catal 2012. [DOI: 10.1002/adsc.201100402] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Wei‐Ting Chien
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Chien‐Fu Liang
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Ching‐Ching Yu
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Jian‐ Hong Lin
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Haung‐Ting Wu
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Chun‐Cheng Lin
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
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15
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Broncel M, Krause E, Schwarzer D, Hackenberger CPR. The Alzheimer’s Disease Related Tau Protein as a New Target for Chemical Protein Engineering. Chemistry 2012; 18:2488-92. [DOI: 10.1002/chem.201103032] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Indexed: 12/12/2022]
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16
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Boughton AP, Nguyen K, Andricioaei I, Chen Z. Interfacial orientation and secondary structure change in tachyplesin I: molecular dynamics and sum frequency generation spectroscopy studies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2011; 27:14343-14351. [PMID: 22054114 PMCID: PMC3235698 DOI: 10.1021/la203192c] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Recent advances in the collection and interpretation of surface-sensitive vibrational spectroscopic measurements have made it possible to study the orientation of peptides and proteins in situ in a biologically relevant environment. However, interpretation of sum frequency generation (SFG) and attenuated total reflectance Fourier transform infrared (ATR-FTIR) vibrational spectroscopy is hindered by the fact that orientation cannot be inferred without some prior knowledge of the protein structure. In this work, molecular dynamics simulations were used to study the interfacial orientation and structural deformation of the short β-sheet peptide tachyplesin I at the polystyrene/water interface. By combining these results with ATR-FTIR and SFG measurements, reasonable agreement was found with the simulation results, suggesting that tachyplesin I lies parallel to the surface, although the simulation results imply a broader distribution of peptide twist angles than could be characterized using available experimental measurements. The interfacial structure was found to be deformable even when disulfide bonds were preserved, and these local deviations from a purely extended β-sheet conformation may be of importance to future developments in the interpretation of SFG and ATR-FTIR spectra.
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Affiliation(s)
- Andrew P. Boughton
- Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109 USA
| | - Khoi Nguyen
- Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109 USA
- Department of Applied Chemistry, School of Biotechnology, International University- Vietnam National University, Linh Trung Ward, Thu Duc District, Ho Chi Minh City 70000 Vietnam
| | - Ioan Andricioaei
- Department of Chemistry, University of California at Irvine, 1102 Natural Sciences 2, Irvine, CA 92697 USA
| | - Zhan Chen
- Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109 USA
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17
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Steinhagen M, Holland-Nell K, Meldal M, Beck-Sickinger AG. Simultaneous “One Pot” Expressed Protein Ligation and CuI-Catalyzed Azide/Alkyne Cycloaddition for Protein Immobilization. Chembiochem 2011; 12:2426-30. [DOI: 10.1002/cbic.201100434] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2011] [Indexed: 01/15/2023]
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18
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Wiesbauer J, Bolivar JM, Mueller M, Schiller M, Nidetzky B. Oriented Immobilization of Enzymes Made Fit for Applied Biocatalysis: Non-Covalent Attachment to Anionic Supports usingZbasic2Module. ChemCatChem 2011. [DOI: 10.1002/cctc.201100103] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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19
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Scholz M, Steinhagen M, Heiker JT, Beck-Sickinger AG, Hey-Hawkins E. Asborin inhibits Aldo/Keto reductase 1A1. ChemMedChem 2011; 6:89-93. [PMID: 20967818 DOI: 10.1002/cmdc.201000368] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Asborin is the carbaborane analogue of aspirin. Replacement of the phenyl ring in aspirin by ortho-carbaborane was found to change the pharmacological profile of the compound remarkably. Unlike aspirin, asborin cannot selectively acetylate a single serine residue in the active site of cyclooxygenase, and as a result inhibitory potency is reduced. Activation of the acetyl group and the presence of the hydrophobic and bulky cluster therefore did not meet the requirements for cyclooxygenase inhibition. Both features, however, match perfectly for inhibition of the aldo/keto reductase family. Herein, we describe the identification of aldo/keto reductase (AKR) 1A1 as an enzymatic target of asborin, which is inhibited in the low micromolar range. The detailed mode of inhibition was studied and is discussed with respect to the cluster properties. The results shed light on how ortho-carbaborane can be used as a drug synthon, as well as on the development of carbaborane-based inhibitors of other aldo/keto reductases.
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Affiliation(s)
- Matthias Scholz
- Institut für Anorganische Chemie der Universität Leipzig, Germany
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20
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Raynes JK, Pearce FG, Meade SJ, Gerrard JA. Immobilization of organophosphate hydrolase on an amyloid fibril nanoscaffold: towards bioremediation and chemical detoxification. Biotechnol Prog 2010; 27:360-7. [PMID: 21485029 DOI: 10.1002/btpr.518] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2010] [Revised: 08/22/2010] [Indexed: 11/07/2022]
Abstract
Organophosphate hydrolase has potential as a bioremediation and chemical detoxification enzyme, but the problems of reusability and stability need to be addressed to use this enzyme on an industrial scale. Immobilizing the enzyme to a nanoscaffold may help to solve these problems. Amyloid fibrils generated from insulin and crystallin provided a novel nanoscaffold for the immobilization of organophosphate hydrolase, using glutaraldehyde as the crosslinking reagent. Electrophoretic, centrifugation, and temperature stability experiments, together with transmission electron microscopy were undertaken to verify that crosslinking had successfully occurred. The resulting fibrils remained active towards the substrate paraoxon and when immobilized to the insulin amyloid fibrils, the enzyme exhibited a significant (∼ 300%) increase in the relative temperature stability at 40, 45, and 50°C (as measured by comparing the initial enzyme activity to the activity remaining after heating), compared to free enzyme. This confirms that amyloid fibrils could provide a new type of nanoscaffold for enzyme immobilization.
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Affiliation(s)
- Jared K Raynes
- Biomolecular Interaction Centre and School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand.
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21
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Boughton AP, Andricioaei I, Chen Z. Surface orientation of magainin 2: molecular dynamics simulation and sum frequency generation vibrational spectroscopic studies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:16031-6. [PMID: 20857957 PMCID: PMC2953566 DOI: 10.1021/la1024394] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We combined molecular dynamics based free energy calculations with sum frequency generation (SFG) spectroscopy to study the orientational distribution of solvated peptides near hydrophobic surfaces. Using a simplified atomistic model of the polystyrene (PS) surface, molecular dynamics simulations have been applied to compute the orientational probability of an α-helical peptide, magainin 2, with respect to the PS/water interface. Free energy calculations revealed that the preferred (horizontal) peptide orientation was driven by the favorable interactions between the hydrophobic PS surface and the hydrophobic residues on the helix, and additional simulations examined the importance of small aggregate formation. Concentration-dependent measurements obtained via SFG vibrational spectroscopy suggest that, at very low peptide concentrations, magainin molecules tend to lie down at the PS/solution interface, which correlates well with the simulation results. When the concentration is increased, peptides exhibit behavior not captured by MD simulations using single helical peptides. A combination of simulations and experiments was shown to yield more reliable results with molecular-level insights into interaction between peptides and polymer surfaces.
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Affiliation(s)
- Andrew P. Boughton
- Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109 USA
| | - Ioan Andricioaei
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences 2, Irvine, CA 92697
| | - Zhan Chen
- Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109 USA
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Ye S, Nguyen KT, Boughton AP, Mello CM, Chen Z. Orientation difference of chemically immobilized and physically adsorbed biological molecules on polymers detected at the solid/liquid interfaces in situ. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:6471-7. [PMID: 19961170 PMCID: PMC2860701 DOI: 10.1021/la903932w] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
A surface sensitive second order nonlinear optical technique, sum frequency generation vibrational spectroscopy, was applied to study peptide orientation on polymer surfaces, supplemented by a linear vibrational spectroscopy, attenuated total reflectance Fourier transform infrared spectroscopy. Using the antimicrobial peptide Cecropin P1 as a model system, we have quantitatively demonstrated that chemically immobilized peptides on polymers adopt a more ordered orientation than less tightly bound physically adsorbed peptides. These differences were also observed in different chemical environments, for example, air versus water. Although numerous studies have reported a direct correlation between the choice of immobilization method and the performance of an attached biological molecule, the lack of direct biomolecular structure and orientation data has made it difficult to elucidate the relationship between structure, orientation, and function at a surface. In this work, we directly studied the effect of chemical immobilization method on biomolecular orientation/ordering, an important step for future studies of biomolecular activity. The methods for orientation analysis described within are also of relevance to understanding biosensors, biocompatibility, marine-antifouling, membrane protein functions, and antimicrobial peptide activities.
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Affiliation(s)
- Shuji Ye
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109
| | - Khoi Tan Nguyen
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109
| | | | - Charlene M. Mello
- Bioscience and Technology Team, US Army Natick Soldier Research, Development, & Engineering Center (NSRDEC), Natick, MA 01760-5020
| | - Zhan Chen
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109
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23
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Protein immobilization at gold–thiol surfaces and potential for biosensing. Anal Bioanal Chem 2010; 398:1545-64. [DOI: 10.1007/s00216-010-3708-6] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2010] [Revised: 03/29/2010] [Accepted: 03/30/2010] [Indexed: 12/14/2022]
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24
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Lin PC, Weinrich D, Waldmann H. Protein Biochips: Oriented Surface Immobilization of Proteins. MACROMOL CHEM PHYS 2009. [DOI: 10.1002/macp.200900539] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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25
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Berrade L, Camarero JA. Expressed protein ligation: a resourceful tool to study protein structure and function. Cell Mol Life Sci 2009; 66:3909-22. [PMID: 19685006 PMCID: PMC3806878 DOI: 10.1007/s00018-009-0122-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2009] [Revised: 07/23/2009] [Accepted: 07/28/2009] [Indexed: 01/21/2023]
Abstract
This review outlines the use of expressed protein ligation (EPL) to study protein structure, function and stability. EPL is a chemoselective ligation method that allows the selective ligation of unprotected polypeptides from synthetic and recombinant origin for the production of semi-synthetic protein samples of well-defined and homogeneous chemical composition. This method has been extensively used for the site-specific introduction of biophysical probes, unnatural amino acids, and increasingly complex post-translational modifications. Since it was introduced 10 years ago, EPL applications have grown increasingly more sophisticated in order to address even more complex biological questions. In this review, we highlight how this powerful technology combined with standard biochemical analysis techniques has been used to improve our ability to understand protein structure and function.
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Affiliation(s)
- Luis Berrade
- Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, PSC 616, Los Angeles, CA 90033 USA
| | - Julio A. Camarero
- Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, PSC 616, Los Angeles, CA 90033 USA
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The use of amphipols as universal molecular adapters to immobilize membrane proteins onto solid supports. Proc Natl Acad Sci U S A 2008; 106:405-10. [PMID: 19116278 DOI: 10.1073/pnas.0807132106] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Because of the importance of their physiological functions, cell membranes represent critical targets in biological research. Membrane proteins, which make up approximately 1/3 of the proteome, interact with a wide range of small ligands and macromolecular partners as well as with foreign molecules such as synthetic drugs, antibodies, toxins, or surface recognition proteins of pathogenic organisms. Whether it is for the sake of basic biomedical or pharmacological research, it is of great interest to develop tools facilitating the study of these interactions. Surface-based in vitro assays are appealing because they require minimum quantities of reagents, and they are suitable for multiplexing and high-throughput screening. We introduce here a general method for immobilizing functional, unmodified integral membrane proteins onto solid supports, thanks to amphipathic polymers called "amphipols." The key point of this approach is that functionalized amphipols can be used as universal adapters to associate any membrane protein to virtually any kind of support while stabilizing its native state. The generality and versatility of this strategy is demonstrated by using 5 different target proteins, 2 types of supports (chips and beads), 2 types of ligands (antibodies and a snake toxin), and 2 detection methods (surface plasmon resonance and fluorescence microscopy).
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Jonkheijm P, Weinrich D, Schröder H, Niemeyer CM, Waldmann H. Chemical strategies for generating protein biochips. Angew Chem Int Ed Engl 2008; 47:9618-47. [PMID: 19025742 DOI: 10.1002/anie.200801711] [Citation(s) in RCA: 510] [Impact Index Per Article: 31.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Protein biochips are at the heart of many medical and bioanalytical applications. Increasing interest has been focused on surface activation and subsequent functionalization strategies for immobilizing these biomolecules. Different approaches using covalent and noncovalent chemistry are reviewed; particular emphasis is placed on the chemical specificity of protein attachment and on retention of protein function. Strategies for creating protein patterns (as opposed to protein arrays) are also outlined. An outlook on promising and challenging future directions for protein biochip research and applications is also offered.
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Affiliation(s)
- Pascal Jonkheijm
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology and Faculty of Chemistry, Chemical Biology, Technical University of Dortmund, Otto Hahn Strasse 11, 44227 Dortmund, Germany
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Hackenberger C, Schwarzer D. Chemoselektive Ligations- und Modifikationsstrategien für Peptide und Proteine. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200801313] [Citation(s) in RCA: 204] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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29
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Hackenberger C, Schwarzer D. Chemoselective Ligation and Modification Strategies for Peptides and Proteins. Angew Chem Int Ed Engl 2008; 47:10030-74. [DOI: 10.1002/anie.200801313] [Citation(s) in RCA: 651] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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30
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Jonkheijm P, Weinrich D, Schröder H, Niemeyer C, Waldmann H. Chemische Verfahren zur Herstellung von Proteinbiochips. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200801711] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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31
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Iversen L, Cherouati N, Berthing T, Stamou D, Martinez KL. Templated protein assembly on micro-contact-printed surface patterns. Use of the SNAP-tag protein functionality. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2008; 24:6375-6381. [PMID: 18484753 DOI: 10.1021/la7037075] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Micro contact printing (microCP) has been established as a simple technique for high-resolution protein patterning for micro- and nanoarrays. However, as biochemical assays based on immobilized protein arrays progress from immunoassays to more delicate functional assays, the demand for methods of miniaturized, gentle, and oriented immobilization, which are applicable to many different target proteins, becomes larger. In this study, we present a novel microCP templated assembly approach, based on a recombinant SNAP-FLAG-HIS 10 (SFH) immobilization vehicle, which exploits the recently developed SNAP-tag protein. The SNAP-tag is derived from the human DNA repair protein hAGT, which covalently transfers the alkyl group of benzyl guanine (BG) substrates onto itself. We have designed a model SFH cassette carrying three tags (SNAP-tag, FLAG-tag, and HIS-tag), each of which can be used for fluorescence labeling or surface immobilization. When patterns of streptavidin modified with BG-biotin (streptavidin-BG) are stamped onto a surface, the SFH can subsequently assemble on the ligand pattern from solution, functioning as a general immobilization vehicle for high-resolution patterning of any protein expressed in the SFH cassette, in a gentle and oriented manner. Alternatively, the SFH can be site-selectively biotinylated using BG-biotin and, subsequently, assemble on stamped streptavidin. We exploit several ways to biotinylate the SFH protein via the SNAP-tag, promoting its templated assembly on micropatterns of streptavidin in four complementary formats. Quantitative analysis of the obtained patterns, revealed by immunostaining, indicates that all four approaches resulted in proper SFH immobilization and antibody recognition, demonstrating the versatility of the SFH cassette and the potential for high resolution patterning applications. Also, our data confirm that streptavidin can be stamped directly on surfaces, without loss of activity. While three strategies resulted in similar patterning efficiencies, one particular approach--namely templated assembly of SFH directly on streptavidin-BG patterns--resulted in an order of magnitude increase in patterning efficiency.
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Affiliation(s)
- Lars Iversen
- Bio-Nanotechnology Laboratory, Department of Neuroscience and Pharmacology & Nano-Science Center, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark
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Singer D, Herth N, Kuhlmann J, Holland-Nell K, Beck-Sickinger A, Hoffmann R. Mapping of phosphorylation-dependent anti-tau monoclonal antibodies in immunoblots using human tau-constructs synthesized by native chemical ligation. Biochem Biophys Res Commun 2008; 367:318-22. [DOI: 10.1016/j.bbrc.2007.12.109] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2007] [Accepted: 12/14/2007] [Indexed: 11/28/2022]
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33
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Minařik A, Humenik M, Li S, Huang Y, Krausch G, Sprinzl M. Ligand-Directed Immobilization of Proteins through an Esterase 2 Fusion Tag Studied by Atomic Force Microscopy. Chembiochem 2008; 9:124-30. [DOI: 10.1002/cbic.200700409] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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