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Su Q, Jiang C, Gou D, Long Y. Surface Plasmon-Assisted Fluorescence Enhancing and Quenching: From Theory to Application. ACS APPLIED BIO MATERIALS 2021; 4:4684-4705. [PMID: 35007020 DOI: 10.1021/acsabm.1c00320] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The integration of surface plasmon resonance and fluorescence yields a multiaspect improvement in surface fluorescence sensing and imaging, leading to a paradigm shift of surface plasmon-assisted fluorescence techniques, for example, surface plasmon enhanced field fluorescence spectroscopy, surface plasmon coupled emission (SPCE), and SPCE imaging. This Review aims to characterize the unique optical property with a common physical interpretation and diverse surface architecture-based measurements. The fundamental electromagnetic theory is employed to comprehensively unveil the fluorophore-surface plasmon interaction, and the associated surface-modification design is liberally highlighted to balance the surface plasmon-induced fluorescence-enhancement efforts and the surface plasmon-caused fluorescence-quenching effects. In particular, all types of surface structures, for example, silicon, carbon, protein, DNA, polymer, and multilayer, are systematically interrogated in terms of component, thickness, stiffness, and functionality. As a highly interdisciplinary and expanding field in physics, optics, chemistry, and surface chemistry, this Review could be of great interest to a broad readership, in particular, among physical chemists, analytical chemists, and in surface-based sensing and imaging studies.
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Affiliation(s)
- Qiang Su
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Carson International Cancer Center, Shenzhen University, 1066 Xueyuan Street, Nanshan District, Shenzhen 518055, Guangdong, China.,School of Chemistry, University of Birmingham, Edgbaston B15 2TT, Birmingham, United Kingdom
| | - Cheng Jiang
- Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom.,Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX3 9DU, United Kingdom
| | - Deming Gou
- Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Carson International Cancer Center, Shenzhen University, 1066 Xueyuan Street, Nanshan District, Shenzhen 518055, Guangdong, China
| | - Yi Long
- Clinical Research Center, Southern University of Science and Technology Hospital, 6019 Liuxian Street, Xili Avenue, Nanshan District, Shenzhen 518055, Guangdong, China
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2
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Bourdeaux F, Kopp Y, Lautenschläger J, Gößner I, Besir H, Vabulas RM, Grininger M. Dodecin as carrier protein for immunizations and bioengineering applications. Sci Rep 2020; 10:13297. [PMID: 32764653 PMCID: PMC7414021 DOI: 10.1038/s41598-020-69990-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 07/13/2020] [Indexed: 11/29/2022] Open
Abstract
In bioengineering, scaffold proteins have been increasingly used to recruit molecules to parts of a cell, or to enhance the efficacy of biosynthetic or signalling pathways. For example, scaffolds can be used to make weak or non-immunogenic small molecules immunogenic by attaching them to the scaffold, in this role called carrier. Here, we present the dodecin from Mycobacterium tuberculosis (mtDod) as a new scaffold protein. MtDod is a homododecameric complex of spherical shape, high stability and robust assembly, which allows the attachment of cargo at its surface. We show that mtDod, either directly loaded with cargo or equipped with domains for non-covalent and covalent loading of cargo, can be produced recombinantly in high quantity and quality in Escherichia coli. Fusions of mtDod with proteins of up to four times the size of mtDod, e.g. with monomeric superfolder green fluorescent protein creating a 437 kDa large dodecamer, were successfully purified, showing mtDod's ability to function as recruitment hub. Further, mtDod equipped with SYNZIP and SpyCatcher domains for post-translational recruitment of cargo was prepared of which the mtDod/SpyCatcher system proved to be particularly useful. In a case study, we finally show that mtDod-peptide fusions allow producing antibodies against human heat shock proteins and the C-terminus of heat shock cognate 70 interacting protein (CHIP).
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Affiliation(s)
- Florian Bourdeaux
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438, Frankfurt am Main, Germany
| | - Yannick Kopp
- Institute of Biophysical Chemistry, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Lauer Str. 15, 60438, Frankfurt am Main, Germany
| | - Julia Lautenschläger
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438, Frankfurt am Main, Germany
| | - Ines Gößner
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438, Frankfurt am Main, Germany
| | - Hüseyin Besir
- European Molecular Biology Laboratory, 69117, Heidelberg, Germany
- PROGEN Biotechnik GmbH, 69123, Heidelberg, Germany
| | - R Martin Vabulas
- Institute of Biochemistry, Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany
| | - Martin Grininger
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, 60438, Frankfurt am Main, Germany.
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Bourdeaux F, Hammer CA, Vogt S, Schweighöfer F, Nöll G, Wachtveitl J, Grininger M. Flavin Storage and Sequestration by Mycobacterium tuberculosis Dodecin. ACS Infect Dis 2018; 4:1082-1092. [PMID: 29608272 DOI: 10.1021/acsinfecdis.7b00237] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Dodecins are small flavin binding proteins occurring in archaea and bacteria. They are remarkable for binding dimers of flavins with their functional relevant aromatic isoalloxazine rings deeply covered. Bacterial dodecins are widely spread and found in a large variety of pathogens, among them Pseudomonas aeruginosa, Streptococcus pneumonia, Ralstonia solanacearum, and Mycobacterium tuberculosis ( M. tuberculosis). In this work, we seek to understand the function of dodecins from M. tuberculosis dodecin. We describe flavin binding in thermodynamic and kinetic properties and achieve mechanistic insight in dodecin function by applying spectroscopic and electrochemical methods. Intriguingly, we reveal a significant pH dependence in the affinity and specificity of flavin binding. Our data give insight in M. tuberculosis dodecin function and advance the current understanding of dodecins as flavin storage and sequestering proteins. We suggest that the dodecin in M. tuberculosis may specifically be important for flavin homeostasis during the elaborate lifestyle of this organism, which calls for the evaluation of this protein as drug target.
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Affiliation(s)
- Florian Bourdeaux
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, D-60438 Frankfurt am Main, Germany
| | - Christopher A. Hammer
- Institute of Physical and Theoretical Chemistry, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Stephan Vogt
- Nöll Junior Research Group, Organic Chemistry, University of Siegen, Adolf-Reichwein-Str. 2, D-57068 Siegen, Germany
| | - Felix Schweighöfer
- Institute of Physical and Theoretical Chemistry, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Gilbert Nöll
- Nöll Junior Research Group, Organic Chemistry, University of Siegen, Adolf-Reichwein-Str. 2, D-57068 Siegen, Germany
| | - Josef Wachtveitl
- Institute of Physical and Theoretical Chemistry, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Martin Grininger
- Institute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Cluster of Excellence for Macromolecular Complexes, Goethe University Frankfurt, Max-von-Laue-Str. 15, D-60438 Frankfurt am Main, Germany
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Vogt S, Wenderhold-Reeb S, Nöll G. Reversible assembly of protein-DNA nanostructures triggered by mediated electron transfer. Electrochim Acta 2017. [DOI: 10.1016/j.electacta.2017.02.075] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Sánchez CG, Su Q, Wenderhold-Reeb S, Nöll G. Nanomechanical properties of protein-DNA layers with different oligonucleotide tethers. RSC Adv 2016; 6:56467-56474. [PMID: 28066548 PMCID: PMC5171221 DOI: 10.1039/c6ra10090b] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Accepted: 06/05/2016] [Indexed: 12/23/2022] Open
Abstract
The length and flexibility of the oligonucleotide tethers strongly affect the viscoelastic properties of the resulting protein–DNA layers.
The multi-ligand binding flavoprotein dodecin is reconstituted on top of flavin-terminated oligonucleotide monolayers. A detailed quartz crystal microbalance with a dissipation monitoring (QCM-D) study showing how the length and flexibility of the oligonucleotide tethers influence the stability and the viscoelastic properties of the resulting DNA–protein layers is presented. Relatively dense protein layers can be obtained, if the length of the tethers is in the same range as the diameter of dodecin. When significantly longer tethers are used, less dense layers are formed. When rather short tethers are used, the reaching area of individual tethers is too low to capture single apododecin molecules cooperatively, and the formation of stable and dense protein layers is not possible. On top of the DNA–dodecin layers additional flavin–DNA ligands may be captured to form sandwich-type DNA–protein–DNA layers. Differences in the binding and unbinding behavior of flavin-dsDNA and flavin-ssDNA ligands are measured by QCM-D and surface plasmon fluorescence spectroscopy (SPFS). Both type of ligands show relatively low kon values, which might be explained by the structural rigidity of the binding pockets allowing a ligand to enter only when it approaches precisely in the right orientation. Apparently apododecin–flavin binding follows Fischer's classic lock-and-key binding model.
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Affiliation(s)
- Cristina Gutiérrez Sánchez
- Nöll Junior Research Group , Organic Chemistry , Chem. Biol. Dept. , Faculty IV , Siegen University , Adolf-Reichwein-Str. 2 , 57068 Siegen , Germany .
| | - Qiang Su
- Nöll Junior Research Group , Organic Chemistry , Chem. Biol. Dept. , Faculty IV , Siegen University , Adolf-Reichwein-Str. 2 , 57068 Siegen , Germany .
| | - Sabine Wenderhold-Reeb
- Nöll Junior Research Group , Organic Chemistry , Chem. Biol. Dept. , Faculty IV , Siegen University , Adolf-Reichwein-Str. 2 , 57068 Siegen , Germany .
| | - Gilbert Nöll
- Nöll Junior Research Group , Organic Chemistry , Chem. Biol. Dept. , Faculty IV , Siegen University , Adolf-Reichwein-Str. 2 , 57068 Siegen , Germany .
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Gutiérrez Sánchez C, Su Q, Schönherr H, Grininger M, Nöll G. Multi-Ligand-Binding Flavoprotein Dodecin as a Key Element for Reversible Surface Modification in Nano-biotechnology. ACS NANO 2015; 9:3491-3500. [PMID: 25738566 DOI: 10.1021/nn506993s] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In this paper the multiple (re)programming of protein-DNA nanostructures comprising generation, deletion, and reprogramming on the same flavin-DNA-modified surface is introduced. This work is based on a systematic study of the binding affinity of the multi-ligand-binding flavoprotein dodecin on flavin-terminated DNA monolayers by surface plasmon resonance and quartz crystal microbalance with dissipation (QCM-D) measurements, surface plasmon fluorescence spectroscopy (SPFS), and dynamic AFM force spectroscopy. Depending on the flavin surface coverage, a single apododecin is captured by one or more surface-immobilized flavins. The corresponding complex binding and unbinding rate constants kon(QCM) = 7.7 × 10(3) M(-1)·s(-1) and koff(QCM) = 4.5 × 10(-3) s(-1) (Kd(QCM) = 580 nM) were determined by QCM and were found to be in agreement with values for koff determined by SPFS and force spectroscopy. Even though a single apododecin-flavin bond is relatively weak, stable dodecin monolayers were formed on flavin-DNA-modified surfaces at high flavin surface coverage due to multivalent interactions between apododecin bearing six binding pockets and the surface-bound flavin-DNA ligands. If bi- or multivalent flavin ligands are adsorbed on dodecin monolayers, stable sandwich-type surface-DNA-flavin-apododecin-flavin ligand arrays are obtained. Nevertheless, the apododecin flavin complex is easily and quantitatively disassembled by flavin reduction. Binding and release of apododecin are reversible processes, which can be carried out alternatingly several times to release one type of ligand by an external redox trigger and subsequently replace it with a different ligand. Hence the versatile concept of reprogrammable functional biointerfaces with the multi-ligand-binding flavoprotein dodecin is demonstrated.
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Affiliation(s)
| | | | | | - Martin Grininger
- ∥Goethe University Frankfurt, Riedberg Campus FMLS Building, Max-von-Laue Straße 15, 60438 Frankfurt am Main, Germany
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Vogt S, Schneider M, Schäfer-Eberwein H, Nöll G. Determination of the pH Dependent Redox Potential of Glucose Oxidase by Spectroelectrochemistry. Anal Chem 2014; 86:7530-5. [DOI: 10.1021/ac501289x] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Stephan Vogt
- Nöll Junior
Research Group, University of Siegen, Adolf-Reichwein-Straße 2, D-57068 Siegen, Germany
| | - Marcel Schneider
- Institute
for
High Frequency and Quantum Electronics, University of Siegen, Hölderlinstraße
3, D-57076 Siegen, Germany
| | - Heiko Schäfer-Eberwein
- Institute
for
High Frequency and Quantum Electronics, University of Siegen, Hölderlinstraße
3, D-57076 Siegen, Germany
| | - Gilbert Nöll
- Nöll Junior
Research Group, University of Siegen, Adolf-Reichwein-Straße 2, D-57068 Siegen, Germany
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Yu Y, Heidel B, Parapugna TL, Wenderhold-Reeb S, Song B, Schönherr H, Grininger M, Nöll G. Das Flavoprotein Dodecin als redoxaktive Sonde für Elektronentransfer durch DNA. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201208987] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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9
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Yu Y, Heidel B, Parapugna TL, Wenderhold-Reeb S, Song B, Schönherr H, Grininger M, Nöll G. The flavoprotein dodecin as a redox probe for electron transfer through DNA. Angew Chem Int Ed Engl 2013; 52:4950-3. [PMID: 23532984 PMCID: PMC3743158 DOI: 10.1002/anie.201208987] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Indexed: 11/18/2022]
Affiliation(s)
- Yaming Yu
- NRW Nachwuchsforschergruppe für Nanotechnologie, Organische Chemie, Universität SiegenFakultät IV, Department für Chemie und Biologie, Adolf-Reichwein-Strasse 2, 57076 Siegen (Germany) E-mail: Homepage: http://www.chemie-biologie.uni-siegen.de/oc/oc1/gruppe_noell/index.html
| | - Björn Heidel
- NRW Nachwuchsforschergruppe für Nanotechnologie, Organische Chemie, Universität SiegenFakultät IV, Department für Chemie und Biologie, Adolf-Reichwein-Strasse 2, 57076 Siegen (Germany) E-mail: Homepage: http://www.chemie-biologie.uni-siegen.de/oc/oc1/gruppe_noell/index.html
| | - Tamara Lourdes Parapugna
- NRW Nachwuchsforschergruppe für Nanotechnologie, Organische Chemie, Universität SiegenFakultät IV, Department für Chemie und Biologie, Adolf-Reichwein-Strasse 2, 57076 Siegen (Germany) E-mail: Homepage: http://www.chemie-biologie.uni-siegen.de/oc/oc1/gruppe_noell/index.html
| | - Sabine Wenderhold-Reeb
- NRW Nachwuchsforschergruppe für Nanotechnologie, Organische Chemie, Universität SiegenFakultät IV, Department für Chemie und Biologie, Adolf-Reichwein-Strasse 2, 57076 Siegen (Germany) E-mail: Homepage: http://www.chemie-biologie.uni-siegen.de/oc/oc1/gruppe_noell/index.html
| | - Bo Song
- Physikalische Chemie I, Universität Siegen, Fakultät IV, Department für Chemie und BiologieAdolf-Reichwein-Strasse 2, 57076 Siegen (Germany)
| | - Holger Schönherr
- Physikalische Chemie I, Universität Siegen, Fakultät IV, Department für Chemie und BiologieAdolf-Reichwein-Strasse 2, 57076 Siegen (Germany)
| | - Martin Grininger
- Institut für Organische Chemie und Chemische Biologie, Buchmann Institut für Molekulare Lebenswissenschaften, Cluster of Excellence “Macromolecular Complexes”, Goethe Universität FrankfurtMax-von-Laue-Strasse 15, 60438 Frankfurt am Main (Germany)
| | - Gilbert Nöll
- NRW Nachwuchsforschergruppe für Nanotechnologie, Organische Chemie, Universität SiegenFakultät IV, Department für Chemie und Biologie, Adolf-Reichwein-Strasse 2, 57076 Siegen (Germany) E-mail: Homepage: http://www.chemie-biologie.uni-siegen.de/oc/oc1/gruppe_noell/index.html
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Klán P, Šolomek T, Bochet CG, Blanc A, Givens R, Rubina M, Popik V, Kostikov A, Wirz J. Photoremovable protecting groups in chemistry and biology: reaction mechanisms and efficacy. Chem Rev 2013; 113:119-91. [PMID: 23256727 PMCID: PMC3557858 DOI: 10.1021/cr300177k] [Citation(s) in RCA: 1228] [Impact Index Per Article: 111.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2012] [Indexed: 02/06/2023]
Affiliation(s)
- Petr Klán
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
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Nöll T, Nöll G. Strategies for “wiring” redox-active proteins to electrodes and applications in biosensors, biofuel cells, and nanotechnology. Chem Soc Rev 2011; 40:3564-76. [DOI: 10.1039/c1cs15030h] [Citation(s) in RCA: 111] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Vinzenz X, Grosse W, Linne U, Meissner B, Essen LO. Chemical engineering of Mycobacterium tuberculosis dodecin hybrids. Chem Commun (Camb) 2011; 47:11071-3. [DOI: 10.1039/c1cc12929e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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