1
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Marglous S, Brown CE, Padler-Karavani V, Cummings RD, Gildersleeve JC. Serum antibody screening using glycan arrays. Chem Soc Rev 2024; 53:2603-2642. [PMID: 38305761 PMCID: PMC7616341 DOI: 10.1039/d3cs00693j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
Humans and other animals produce a diverse collection of antibodies, many of which bind to carbohydrate chains, referred to as glycans. These anti-glycan antibodies are a critical part of our immune systems' defenses. Whether induced by vaccination or natural exposure to a pathogen, anti-glycan antibodies can provide protection against infections and cancers. Alternatively, when an immune response goes awry, antibodies that recognize self-glycans can mediate autoimmune diseases. In any case, serum anti-glycan antibodies provide a rich source of information about a patient's overall health, vaccination history, and disease status. Glycan microarrays provide a high-throughput platform to rapidly interrogate serum anti-glycan antibodies and identify new biomarkers for a variety of conditions. In addition, glycan microarrays enable detailed analysis of the immune system's response to vaccines and other treatments. Herein we review applications of glycan microarray technology for serum anti-glycan antibody profiling.
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Affiliation(s)
- Samantha Marglous
- Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
| | - Claire E Brown
- Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
| | - Vered Padler-Karavani
- Department of Cell Research and Immunology, Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel.
| | - Richard D Cummings
- Department of Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02115, USA.
| | - Jeffrey C Gildersleeve
- Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
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2
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Wojtczak K, Byrne JP. Structural considerations for building synthetic glycoconjugates as inhibitors for Pseudomonas aeruginosa lectins. ChemMedChem 2022; 17:e202200081. [PMID: 35426976 PMCID: PMC9321714 DOI: 10.1002/cmdc.202200081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 04/13/2022] [Indexed: 11/16/2022]
Abstract
Pseudomonas aeruginosa is a pathogenic bacterium, responsible for a large portion of nosocomial infections globally and designated as critical priority by the World Health Organisation. Its characteristic carbohydrate‐binding proteins LecA and LecB, which play a role in biofilm‐formation and lung‐infection, can be targeted by glycoconjugates. Here we review the wide range of inhibitors for these proteins (136 references), highlighting structural features and which impact binding affinity and/or therapeutic effects, including carbohydrate selection; linker length and rigidity; and scaffold topology, particularly for multivalent candidates. We also discuss emerging therapeutic strategies, which build on targeting of LecA and LecB, such as anti‐biofilm activity, anti‐adhesion and drug‐delivery, with promising prospects for medicinal chemistry.
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Affiliation(s)
- Karolina Wojtczak
- National University of Ireland Galway School of Biological and Chemical Sciences University Road H91 TK33 Galway IRELAND
| | - Joseph Peter Byrne
- National University of Ireland Galway School of Chemistry University Road H91 TK33 Galway IRELAND
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3
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Tsouka A, Hoetzel K, Mende M, Heidepriem J, Paris G, Eickelmann S, Seeberger PH, Lepenies B, Loeffler FF. Probing Multivalent Carbohydrate-Protein Interactions With On-Chip Synthesized Glycopeptides Using Different Functionalized Surfaces. Front Chem 2021; 9:766932. [PMID: 34778215 PMCID: PMC8589469 DOI: 10.3389/fchem.2021.766932] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 10/11/2021] [Indexed: 01/01/2023] Open
Abstract
Multivalent ligand-protein interactions are a commonly employed approach by nature in many biological processes. Single glycan-protein interactions are often weak, but their affinity and specificity can be drastically enhanced by engaging multiple binding sites. Microarray technology allows for quick, parallel screening of such interactions. Yet, current glycan microarray methodologies usually neglect defined multivalent presentation. Our laser-based array technology allows for a flexible, cost-efficient, and rapid in situ chemical synthesis of peptide scaffolds directly on functionalized glass slides. Using copper(I)-catalyzed azide-alkyne cycloaddition, different monomer sugar azides were attached to the scaffolds, resulting in spatially defined multivalent glycopeptides on the solid support. Studying their interaction with several different lectins showed that not only the spatially defined sugar presentation, but also the surface functionalization and wettability, as well as accessibility and flexibility, play an essential role in such interactions. Therefore, different commercially available functionalized glass slides were equipped with a polyethylene glycol (PEG) linker to demonstrate its effect on glycan-lectin interactions. Moreover, different monomer sugar azides with and without an additional PEG-spacer were attached to the peptide scaffold to increase flexibility and thereby improve binding affinity. A variety of fluorescently labeled lectins were probed, indicating that different lectin-glycan pairs require different surface functionalization and spacers for enhanced binding. This approach allows for rapid screening and evaluation of spacing-, density-, ligand and surface-dependent parameters, to find optimal lectin binders.
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Affiliation(s)
- Alexandra Tsouka
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
- Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany
| | - Kassandra Hoetzel
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
| | - Marco Mende
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
| | - Jasmin Heidepriem
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
- Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany
| | - Grigori Paris
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
- Department of System Dynamics and Friction Physics, Institute of Mechanics, Technical University of Berlin, Berlin, Germany
| | - Stephan Eickelmann
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
| | - Peter H. Seeberger
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
- Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany
| | - Bernd Lepenies
- Institute for Immunology and Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Felix F. Loeffler
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany
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4
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Agrahari AK, Bose P, Jaiswal MK, Rajkhowa S, Singh AS, Hotha S, Mishra N, Tiwari VK. Cu(I)-Catalyzed Click Chemistry in Glycoscience and Their Diverse Applications. Chem Rev 2021; 121:7638-7956. [PMID: 34165284 DOI: 10.1021/acs.chemrev.0c00920] [Citation(s) in RCA: 154] [Impact Index Per Article: 51.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Copper(I)-catalyzed 1,3-dipolar cycloaddition between organic azides and terminal alkynes, commonly known as CuAAC or click chemistry, has been identified as one of the most successful, versatile, reliable, and modular strategies for the rapid and regioselective construction of 1,4-disubstituted 1,2,3-triazoles as diversely functionalized molecules. Carbohydrates, an integral part of living cells, have several fascinating features, including their structural diversity, biocompatibility, bioavailability, hydrophilicity, and superior ADME properties with minimal toxicity, which support increased demand to explore them as versatile scaffolds for easy access to diverse glycohybrids and well-defined glycoconjugates for complete chemical, biochemical, and pharmacological investigations. This review highlights the successful development of CuAAC or click chemistry in emerging areas of glycoscience, including the synthesis of triazole appended carbohydrate-containing molecular architectures (mainly glycohybrids, glycoconjugates, glycopolymers, glycopeptides, glycoproteins, glycolipids, glycoclusters, and glycodendrimers through regioselective triazole forming modular and bio-orthogonal coupling protocols). It discusses the widespread applications of these glycoproducts as enzyme inhibitors in drug discovery and development, sensing, gelation, chelation, glycosylation, and catalysis. This review also covers the impact of click chemistry and provides future perspectives on its role in various emerging disciplines of science and technology.
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Affiliation(s)
- Anand K Agrahari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Priyanka Bose
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Manoj K Jaiswal
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Sanchayita Rajkhowa
- Department of Chemistry, Jorhat Institute of Science and Technology (JIST), Jorhat, Assam 785010, India
| | - Anoop S Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Srinivas Hotha
- Department of Chemistry, Indian Institute of Science and Engineering Research (IISER), Pune, Maharashtra 411021, India
| | - Nidhi Mishra
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Vinod K Tiwari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
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5
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Mende M, Tsouka A, Heidepriem J, Paris G, Mattes DS, Eickelmann S, Bordoni V, Wawrzinek R, Fuchsberger FF, Seeberger PH, Rademacher C, Delbianco M, Mallagaray A, Loeffler FF. On-Chip Neo-Glycopeptide Synthesis for Multivalent Glycan Presentation. Chemistry 2020; 26:9954-9963. [PMID: 32315099 PMCID: PMC7496964 DOI: 10.1002/chem.202001291] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Revised: 04/17/2020] [Indexed: 11/11/2022]
Abstract
Single glycan-protein interactions are often weak, such that glycan binding partners commonly utilize multiple, spatially defined binding sites to enhance binding avidity and specificity. Current array technologies usually neglect defined multivalent display. Laser-based array synthesis technology allows for flexible and rapid on-surface synthesis of different peptides. By combining this technique with click chemistry, neo-glycopeptides were produced directly on a functionalized glass slide in the microarray format. Density and spatial distribution of carbohydrates can be tuned, resulting in well-defined glycan structures for multivalent display. The two lectins concanavalin A and langerin were probed with different glycans on multivalent scaffolds, revealing strong spacing-, density-, and ligand-dependent binding. In addition, we could also measure the surface dissociation constant. This approach allows for a rapid generation, screening, and optimization of a multitude of multivalent scaffolds for glycan binding.
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Affiliation(s)
- Marco Mende
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Alexandra Tsouka
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
- Department of Chemistry and BiochemistryFreie Universität BerlinArnimalle 2214195BerlinGermany
| | - Jasmin Heidepriem
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
- Department of Chemistry and BiochemistryFreie Universität BerlinArnimalle 2214195BerlinGermany
| | - Grigori Paris
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Daniela S. Mattes
- Institute of Microstructure TechnologyKarlsruhe Institute of TechnologyHermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
| | - Stephan Eickelmann
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Vittorio Bordoni
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Robert Wawrzinek
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Felix F. Fuchsberger
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Peter H. Seeberger
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
- Department of Chemistry and BiochemistryFreie Universität BerlinArnimalle 2214195BerlinGermany
| | - Christoph Rademacher
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Martina Delbianco
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
| | - Alvaro Mallagaray
- Institut für Chemie und MetabolomicsUniversität zu LübeckRatzeburger Allee 16023562LübeckGermany
| | - Felix F. Loeffler
- Department of Biomolecular SystemsMax Planck Institute of Colloids and InterfacesAm Muehlenberg 114476PotsdamGermany
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6
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Mende M, Bordoni V, Tsouka A, Loeffler FF, Delbianco M, Seeberger PH. Multivalent glycan arrays. Faraday Discuss 2020; 219:9-32. [PMID: 31298252 DOI: 10.1039/c9fd00080a] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Glycan microarrays have become a powerful technology to study biological processes, such as cell-cell interaction, inflammation, and infections. Yet, several challenges, especially in multivalent display, remain. In this introductory lecture we discuss the state-of-the-art glycan microarray technology, with emphasis on novel approaches to access collections of pure glycans and their immobilization on surfaces. Future directions to mimic the natural glycan presentation on an array format, as well as in situ generation of combinatorial glycan collections, are discussed.
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Affiliation(s)
- Marco Mende
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany.
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7
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Gorbunov A, Kuznetsova J, Puchnin K, Kovalev V, Vatsouro I. Triazolated calix[4]arenes from 2-azidoethylated precursors: is there a difference in the way the triazoles are attached to narrow rims? NEW J CHEM 2019. [DOI: 10.1039/c8nj06464d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
A large series of narrow-rim 4-R-1-triazolated calix[4]arenes was prepared, and these compounds were compared in terms of their cation-binding ability with the ‘inverted’ 1-R-4-triazolated calix[4]arenes.
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Affiliation(s)
- Alexander Gorbunov
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Julia Kuznetsova
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Kirill Puchnin
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Vladimir Kovalev
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Ivan Vatsouro
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
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8
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Zhou X, Pathak P, Jayawickramarajah J. Design, synthesis, and applications of DNA-macrocyclic host conjugates. Chem Commun (Camb) 2018; 54:11668-11680. [PMID: 30255866 DOI: 10.1039/c8cc06716c] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
With this Feature Article we review, for the first time, the development of DNA-host conjugates-a nascent yet rapidly growing research focus within the ambit of DNA supramolecular chemistry. Synthetic hosts (such as cyclodextrins, cucurbiturils, and calixarenes) are well-suited to be partnered with DNA, since DNA assembly and host-guest binding both thrive in aqueous media, are largely orthogonal, and exhibit controllable and input-responsive properties. The covalent braiding of these two supramolecular synthons thus leads to advanced self-assemblies and nanostructures with exciting function that range from drug delivery agents to input-triggered switches. The latter class of DNA-host conjugates have been demonstrated to precisely control protein activity, and have also been used as modulable catalysts and versatile biosensors.
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Affiliation(s)
- X Zhou
- Department of Chemistry, Tulane University, 2015 Percival Stern Hall, New Orleans, Louisiana 70118, USA.
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9
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Martynenko-Makaev YV, Udodova VV, Sharko OL, Shmanai VV. Synthesis of Pentaerythritol-Based Branching Reagents for Modification of Proteins and Nucleic Acids by [2+3] Dipolar Cycloaddition Reaction. RUSS J GEN CHEM+ 2018. [DOI: 10.1134/s1070363218030118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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Kim HS, Hyun JY, Park SH, Shin I. Analysis of binding properties of pathogens and toxins using multivalent glycan microarrays. RSC Adv 2018; 8:14898-14905. [PMID: 35541319 PMCID: PMC9080041 DOI: 10.1039/c8ra01285g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 04/15/2018] [Indexed: 11/28/2022] Open
Abstract
Pathogens infect hosts often through initial binding of their cell surface lectins to glycans expressed on the exterior of host cells. Thus, methods to evaluate the glycan-binding properties of pathogens are of great importance. Because of the multivalent nature of interactions of pathogens with glycans, the ability to assess the glycan density-dependent binding of pathogens is particularly important. In this study, we developed a facile technique to construct multivalent carbohydrate microarrays through immobilization of unmodified glycans on multivalent hydrazide-derivatized glass surfaces. This immobilization strategy does not require the use of multivalent glycoconjugates, which are typically prepared by using multistep sequences. The results of analysis of microarray images, obtained after incubation of multivalent glycan microarrays with cholera toxin B and pathogens such as uropathogenic E. coli and H. pylori, show that the binding affinities of toxins and pathogens for glycans are highly glycan density-dependent. Specifically, toxins and pathogens bind to glycans more strongly as the valency of the glycans on the microarrays is increased from 1 to 4. It is anticipated that the newly developed immobilization method will be applicable to the preparation of multivalent carbohydrate microarrays that are employed to evaluate multivalent glycan binding properties of a variety of pathogens and toxins. Microarrays constructed by immobilizing free glycans on multivalent hydrazide-coated surfaces were applied to evaluate multivalent glycan binding properties of pathogens.![]()
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Affiliation(s)
- Hyoung Sub Kim
- Center for Biofunctional Molecules
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Republic of Korea
| | - Ji Young Hyun
- Center for Biofunctional Molecules
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Republic of Korea
| | - Seong-Hyun Park
- Center for Biofunctional Molecules
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Republic of Korea
| | - Injae Shin
- Center for Biofunctional Molecules
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Republic of Korea
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11
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Zelli R, Tommasone S, Dumy P, Marra A, Dondoni A. A Click Ligation Based on SuFEx for the Metal-Free Synthesis of Sugar and Iminosugar Clusters. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600732] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Renaud Zelli
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Stefano Tommasone
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Alberto Marra
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Alessandro Dondoni
- Interdisciplinary Center for the Study of Inflammation; Università di Ferrara; Via Borsari 46 44121 Ferrara Italy
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12
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Jiang XK, Ikejiri Y, Jin CC, Wu C, Zhao JL, Ni XL, Zeng X, Redshaw C, Yamato T. Synthesis and evaluation of a novel fluorescent sensor based on hexahomotrioxacalix[3]arene for Zn2+ and Cd2+. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.06.055] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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13
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Tiwari VK, Mishra BB, Mishra KB, Mishra N, Singh AS, Chen X. Cu-Catalyzed Click Reaction in Carbohydrate Chemistry. Chem Rev 2016; 116:3086-240. [PMID: 26796328 DOI: 10.1021/acs.chemrev.5b00408] [Citation(s) in RCA: 523] [Impact Index Per Article: 65.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Cu(I)-catalyzed azide-alkyne 1,3-dipolar cycloaddition (CuAAC), popularly known as the "click reaction", serves as the most potent and highly dependable tool for facile construction of simple to complex architectures at the molecular level. Click-knitted threads of two exclusively different molecular entities have created some really interesting structures for more than 15 years with a broad spectrum of applicability, including in the fascinating fields of synthetic chemistry, medicinal science, biochemistry, pharmacology, material science, and catalysis. The unique properties of the carbohydrate moiety and the advantages of highly chemo- and regioselective click chemistry, such as mild reaction conditions, efficient performance with a wide range of solvents, and compatibility with different functionalities, together produce miraculous neoglycoconjugates and neoglycopolymers with various synthetic, biological, and pharmaceutical applications. In this review we highlight the successful advancement of Cu(I)-catalyzed click chemistry in glycoscience and its applications as well as future scope in different streams of applied sciences.
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Affiliation(s)
- Vinod K Tiwari
- Department of Chemistry, Centre of Advanced Study, Institute of Science, Banaras Hindu University , Varanasi, Uttar Pradesh-221005, India
| | - Bhuwan B Mishra
- Department of Chemistry, Centre of Advanced Study, Institute of Science, Banaras Hindu University , Varanasi, Uttar Pradesh-221005, India
| | - Kunj B Mishra
- Department of Chemistry, Centre of Advanced Study, Institute of Science, Banaras Hindu University , Varanasi, Uttar Pradesh-221005, India
| | - Nidhi Mishra
- Department of Chemistry, Centre of Advanced Study, Institute of Science, Banaras Hindu University , Varanasi, Uttar Pradesh-221005, India
| | - Anoop S Singh
- Department of Chemistry, Centre of Advanced Study, Institute of Science, Banaras Hindu University , Varanasi, Uttar Pradesh-221005, India
| | - Xi Chen
- Department of Chemistry, One Shields Avenue, University of California-Davis , Davis, California 95616, United States
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14
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Müller C, Despras G, Lindhorst TK. Organizing multivalency in carbohydrate recognition. Chem Soc Rev 2016; 45:3275-302. [DOI: 10.1039/c6cs00165c] [Citation(s) in RCA: 155] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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15
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2009-2010. MASS SPECTROMETRY REVIEWS 2015; 34:268-422. [PMID: 24863367 PMCID: PMC7168572 DOI: 10.1002/mas.21411] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2013] [Revised: 07/16/2013] [Accepted: 07/16/2013] [Indexed: 05/07/2023]
Abstract
This review is the sixth update of the original article published in 1999 on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2010. General aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, arrays and fragmentation are covered in the first part of the review and applications to various structural typed constitutes the remainder. The main groups of compound that are discussed in this section are oligo and polysaccharides, glycoproteins, glycolipids, glycosides and biopharmaceuticals. Many of these applications are presented in tabular form. Also discussed are medical and industrial applications of the technique, studies of enzyme reactions and applications to chemical synthesis.
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Affiliation(s)
- David J. Harvey
- Department of BiochemistryOxford Glycobiology InstituteUniversity of OxfordOxfordOX1 3QUUK
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16
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Cecioni S, Imberty A, Vidal S. Glycomimetics versus Multivalent Glycoconjugates for the Design of High Affinity Lectin Ligands. Chem Rev 2014; 115:525-61. [DOI: 10.1021/cr500303t] [Citation(s) in RCA: 381] [Impact Index Per Article: 38.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Samy Cecioni
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
| | - Anne Imberty
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
| | - Sébastien Vidal
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
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17
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Bernardi S, Fezzardi P, Rispoli G, Sestito SE, Peri F, Sansone F, Casnati A. Clicked and long spaced galactosyl- and lactosylcalix[4]arenes: new multivalent galectin-3 ligands. Beilstein J Org Chem 2014; 10:1672-80. [PMID: 25161726 PMCID: PMC4142870 DOI: 10.3762/bjoc.10.175] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 06/23/2014] [Indexed: 12/31/2022] Open
Abstract
Four novel calix[4]arene-based glycoclusters were synthesized by conjugating the saccharide units to the macrocyclic scaffold using the CuAAC reaction and using long and hydrophilic ethylene glycol spacers. Initially, two galactosylcalix[4]arenes were prepared starting from saccharide units and calixarene cores which differ in the relative dispositions of the alkyne and azido groups. Once the most convenient synthetic pathway was selected, two further lactosylcalix[4]arenes were obtained, one in the cone, the other one in the 1,3-alternate structure. Preliminary studies of the interactions of these novel glycocalixarenes with galectin-3 were carried out by using a lectin-functionalized chip and surface plasmon resonance. These studies indicate a higher affinity of lactosyl- over galactosylcalixarenes. Furthermore, we confirmed that in case of this specific lectin binding the presentation of lactose units on a cone calixarene is highly preferred with respect to its isomeric form in the 1,3-alternate structure.
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Affiliation(s)
- Silvia Bernardi
- Dipartimento di Chimica, Università degli Studi di Parma, Parco Area delle Scienze 17/a, 43124 Parma, Italy
| | - Paola Fezzardi
- Dipartimento di Chimica, Università degli Studi di Parma, Parco Area delle Scienze 17/a, 43124 Parma, Italy
| | - Gabriele Rispoli
- Dipartimento di Chimica, Università degli Studi di Parma, Parco Area delle Scienze 17/a, 43124 Parma, Italy
| | - Stefania E Sestito
- Dipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy
| | - Francesco Peri
- Dipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy
| | - Francesco Sansone
- Dipartimento di Chimica, Università degli Studi di Parma, Parco Area delle Scienze 17/a, 43124 Parma, Italy
| | - Alessandro Casnati
- Dipartimento di Chimica, Università degli Studi di Parma, Parco Area delle Scienze 17/a, 43124 Parma, Italy
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18
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Ghirardello M, Öberg K, Staderini S, Renaudet O, Berthet N, Dumy P, Hed Y, Marra A, Malkoch M, Dondoni A. Thiol-ene and thiol-yne-based synthesis of glycodendrimers as nanomolar inhibitors of wheat germ agglutinin. ACTA ACUST UNITED AC 2014. [DOI: 10.1002/pola.27262] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Mattia Ghirardello
- Dipartimento di Scienze Chimiche e Farmaceutiche; Università di Ferrara; Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Kim Öberg
- Division of Coating Technology; KTH The Royal Institute of Technology, School of Chemical Science and Engineering; Teknikringen 56-58 SE-10044 Stockholm Sweden
| | - Samuele Staderini
- Dipartimento di Scienze Chimiche e Farmaceutiche; Università di Ferrara; Via Fossato di Mortara 17 44121 Ferrara Italy
| | - Olivier Renaudet
- Département de Chimie Moléculaire; UMR CNRS 5250, Université Joseph Fourier, 570 Rue de la chimie, BP 53; 38041 Grenoble cedex 9 France
| | - Nathalie Berthet
- Département de Chimie Moléculaire; UMR CNRS 5250, Université Joseph Fourier, 570 Rue de la chimie, BP 53; 38041 Grenoble cedex 9 France
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247, Université Montpellier 2, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale; 34296 Montpellier cedex 5 France
| | - Yvonne Hed
- Division of Coating Technology; KTH The Royal Institute of Technology, School of Chemical Science and Engineering; Teknikringen 56-58 SE-10044 Stockholm Sweden
| | - Alberto Marra
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247, Université Montpellier 2, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale; 34296 Montpellier cedex 5 France
| | - Michael Malkoch
- Division of Coating Technology; KTH The Royal Institute of Technology, School of Chemical Science and Engineering; Teknikringen 56-58 SE-10044 Stockholm Sweden
| | - Alessandro Dondoni
- Interdisciplinary Center for the Study of Inflammation, Università di Ferrara; Via Borsari 46 44100 Ferrara Italy
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Song M, Sun Z, Han C, Tian D, Li H, Kim JS. Calixarene-based chemosensors by means of click chemistry. Chem Asian J 2014; 9:2344-57. [PMID: 24898975 DOI: 10.1002/asia.201400024] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 03/19/2014] [Indexed: 01/13/2023]
Abstract
Click chemistry, a new strategy for organic chemistry, has been widely used in the chemical modification of calixarenes because of its reliability, specificity, biocompatibility, and efficiency. Click-derived triazoles also play a critical role in sensing ions and molecules. This in-depth review provides an overview of calixarene-based chemosensors that incorporate click-derived triazoles, and their three characteristics (chromogenic, fluorescence, and wettability) are reviewed.
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Affiliation(s)
- Miaomiao Song
- Key Laboratory of Pesticide and Chemical Biology (CCNU), Ministry of Education, College of Chemistry, Central China Normal University, Wuhan, 430079 (P.R. China)
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20
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DNA directed immobilization glycocluster array: applications and perspectives. Curr Opin Chem Biol 2014; 18:46-54. [DOI: 10.1016/j.cbpa.2013.12.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Revised: 12/02/2013] [Accepted: 12/10/2013] [Indexed: 12/28/2022]
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21
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Gerland B, Goudot A, Ligeour C, Pourceau G, Meyer A, Vidal S, Gehin T, Vidal O, Souteyrand E, Vasseur JJ, Chevolot Y, Morvan F. Structure binding relationship of galactosylated Glycoclusters toward Pseudomonas aeruginosa lectin LecA using a DNA-based carbohydrate microarray. Bioconjug Chem 2014; 25:379-92. [PMID: 24479549 DOI: 10.1021/bc4005365] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Pseudomonas aeruginosa (PA) is a major public health issue due to its impact on nosocomial infections as well as its impact on cystic fibrosis patient mortality. One of the main concerns is its ability to develop antibiotic resistance. Therefore, inhibition of PA virulence has been proposed as an alternative strategy to tackle PA based infections. LecA (or PA-IL), a galactose binding lectin from PA, is involved in its virulence. Herein, we aimed at designing high affinity synthetic ligands toward LecA for its inhibition and at understanding the key parameters governing the binding of multivalent galactosylated clusters. Twenty-five glycoclusters were synthesized and their bindings were studied on a carbohydrate microarray. Monosaccharide centered clusters and linear comb-like clusters were synthesized with different linkers separating the core and the galactosyl residues. Their length, flexibility, and aromaticity were varied. Our results showed that the binding profile of LecA to galactosylated clusters was dependent on both the core and the linker and also that the optimal linker was different for each core. Nevertheless, an aryl group in the linker structure drastically improved the binding to LecA. Our results also suggest that optimal distances are preferred between the core and the aromatic group and the core and the galactose.
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Affiliation(s)
- Béatrice Gerland
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1 - Université Montpellier 2 , place Eugène Bataillon, CC1704, 34095 Montpellier cedex 5, France
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22
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Titov DV, Gening ML, Tsvetkov YE, Nifantiev NE. Oligodentate glycoconjugates based on calixarenes: methods for the synthesis and biological activity. Russ Chem Bull 2014. [DOI: 10.1007/s11172-013-0082-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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23
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Temme JS, Drzyzga MG, MacPherson IS, Krauss IJ. Directed evolution of 2G12-targeted nonamannose glycoclusters by SELMA. Chemistry 2013; 19:17291-5. [PMID: 24227340 DOI: 10.1002/chem.201303848] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2013] [Indexed: 11/11/2022]
Affiliation(s)
- J Sebastian Temme
- Department of Chemistry, Brandeis University, 415 South St., Waltham, MA 02454 (USA)
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24
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Pertici F, de Mol NJ, Kemmink J, Pieters RJ. Optimizing Divalent Inhibitors ofPseudomonas aeruginosaLectin LecA by Using A Rigid Spacer. Chemistry 2013; 19:16923-7. [DOI: 10.1002/chem.201303463] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Indexed: 11/10/2022]
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25
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Abstract
In the last decade, carbohydrate microarrays have been core technologies for analyzing carbohydrate-mediated recognition events in a high-throughput fashion. A number of methods have been exploited for immobilizing glycans on the solid surface in a microarray format. This microarray-based technology has been widely employed for rapid analysis of the glycan binding properties of lectins and antibodies, the quantitative measurements of glycan-protein interactions, detection of cells and pathogens, identification of disease-related anti-glycan antibodies for diagnosis, and fast assessment of substrate specificities of glycosyltransferases. This review covers the construction of carbohydrate microarrays, detection methods of carbohydrate microarrays and their applications in biological and biomedical research.
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Affiliation(s)
- Sungjin Park
- National Creative Research Initiative Center for Biofunctional Molecules, Department of Chemistry, Yonsei University, Seoul 120-749, Korea
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26
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Goudot A, Pourceau G, Meyer A, Gehin T, Vidal S, Vasseur JJ, Morvan F, Souteyrand E, Chevolot Y. Quantitative analysis (Kd and IC50) of glycoconjugates interactions with a bacterial lectin on a carbohydrate microarray with DNA Direct Immobilization (DDI). Biosens Bioelectron 2013; 40:153-60. [DOI: 10.1016/j.bios.2012.07.003] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Revised: 06/22/2012] [Accepted: 07/07/2012] [Indexed: 01/14/2023]
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27
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Spinelli N, Defrancq E, Morvan F. Glycoclusters on oligonucleotide and PNA scaffolds: synthesis and applications. Chem Soc Rev 2012; 42:4557-73. [PMID: 23254681 DOI: 10.1039/c2cs35406c] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Conjugation of oligonucleotides (ONs) to a variety of reporter groups has been the subject of intensive research during the last decade. Conjugation is indeed of great interest because it can be used not only to improve the existing ONs properties but also to impart new ones. In this context tremendous efforts have been made to conjugate carbohydrate moieties to ONs. Indeed carbohydrates play an important role in biological processes such as signal transduction and cell adhesion through the recognition with sugar-binding proteins (i.e. lectins) located on the surface of cells. For this reason, carbohydrate-oligonucleotide conjugates (COCs) have been first developed for improving the poor cellular uptake or tissue specific delivery of ONs through receptor-mediated endocytosis. Besides the targeted ONs delivery, carbohydrate-oligonucleotide conjugates (COCs) are also evaluated in the context of carbohydrate biochips in which surface coating with carbohydrates is achieved by using the DNA-directed immobilization strategy (DDI). Peptide nucleic acids (PNAs) have also been extensively investigated as a surrogate of DNA for diverse applications. Therefore attachment of carbohydrate moieties to this class of molecules has been studied. The aforementioned applications of COCs require mimicking of the natural processes, in which the weak individual protein-carbohydrate binding is overcome by using multivalent interactions. This tutorial review focuses on the recent advances in carbohydrate-oligonucleotide conjugates and describes the major synthetic approaches available. In addition, an overview of applications that have been developed using various scaffolds allowing multivalent interactions is provided. Finally recent results on the use of peptide nucleic acids as oligonucleotides surrogate are described.
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Affiliation(s)
- Nicolas Spinelli
- Département de Chimie Moléculaire UMR 5250, CNRS Université Joseph Fourier, BP 53-38041, Grenoble cedex 9, France
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28
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Gerland B, Goudot A, Pourceau G, Meyer A, Vidal S, Souteyrand E, Vasseur JJ, Chevolot Y, Morvan F. Synthesis of Homo- and Heterofunctionalized Glycoclusters and Binding to Pseudomonas aeruginosa Lectins PA-IL and PA-IIL. J Org Chem 2012; 77:7620-6. [DOI: 10.1021/jo300826u] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Béatrice Gerland
- Institut des Biomolécules
Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1, Université Montpellier 2, Place
Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Alice Goudot
- Institut des Nanotechnologies
de Lyon (INL), Université de Lyon, UMR 5270 CNRS Ecole Centrale de Lyon, 36 Avenue Guy de Collongue,
69134 Ecully Cedex, France
| | - Gwladys Pourceau
- Institut des Biomolécules
Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1, Université Montpellier 2, Place
Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Albert Meyer
- Institut des Biomolécules
Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1, Université Montpellier 2, Place
Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Sébastien Vidal
- Institut de Chimie et Biochimie
Moléculaires et Supramoléculaires (ICBMS), Laboratoire
de Chimie Organique 2 - Glycochimie, UMR 5246 CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918,
69622 Villeurbanne, France
| | - Eliane Souteyrand
- Institut des Nanotechnologies
de Lyon (INL), Université de Lyon, UMR 5270 CNRS Ecole Centrale de Lyon, 36 Avenue Guy de Collongue,
69134 Ecully Cedex, France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules
Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1, Université Montpellier 2, Place
Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
| | - Yann Chevolot
- Institut des Nanotechnologies
de Lyon (INL), Université de Lyon, UMR 5270 CNRS Ecole Centrale de Lyon, 36 Avenue Guy de Collongue,
69134 Ecully Cedex, France
| | - François Morvan
- Institut des Biomolécules
Max Mousseron (IBMM), UMR 5247 CNRS - Université Montpellier 1, Université Montpellier 2, Place
Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
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29
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Gerland B, Goudot A, Pourceau G, Meyer A, Dugas V, Cecioni S, Vidal S, Souteyrand E, Vasseur JJ, Chevolot Y, Morvan F. Synthesis of a library of fucosylated glycoclusters and determination of their binding toward Pseudomonas aeruginosa lectin B (PA-IIL) using a DNA-based carbohydrate microarray. Bioconjug Chem 2012; 23:1534-47. [PMID: 22799498 DOI: 10.1021/bc2006434] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Pseudomonas aeruginosa (PA) is a Gram negative opportunistic pathogen and is the major pathogen encounter in the cystic fibrosis (CF) lung airways. It often leads to chronic respiratory infection despite aggressive antibiotic therapy due to the emergence of resistant strains and to the formation of biofilm. The lectin PA-IIL (LecB) is a fucose-specific lectin from PA suspected to be involved in host recognition/adhesion and in biofilm formation. Thus, it can be foreseen as a potential therapeutic target. Herein, 16 fucosylated glycoclusters with antenna-like, linear, or crown-like spatial arrangements were synthesized using a combination of DNA solid-phase synthesis and alkyne azide 1,3-dipolar cycloaddition (CuAAC). Their binding properties toward PA-IIL were then evaluated based on DNA directed immobilization (DDI) carbohydrate microarray. Our results suggested that the antenna-like scaffold was preferred to linear or crown-like glycoclusters. Among the crown-like carbohydrate centered fucosylated glycoclusters, mannose-based core was better than glucose- and galactose-based ones. The influence of the linker arm was also evaluated, and long linkers between fucoses and the core led to a slight better binding than the short ones.
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Affiliation(s)
- Béatrice Gerland
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS--Université Montpellier 1--Université Montpellier 2, Place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France
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30
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Tian X, Pai J, Shin I. Analysis of Density-Dependent Binding of Glycans by Lectins Using Carbohydrate Microarrays. Chem Asian J 2012; 7:2052-60. [DOI: 10.1002/asia.201200202] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2012] [Indexed: 12/11/2022]
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31
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Ligeour C, Meyer A, Vasseur JJ, Morvan F. Bis- and Tris-Alkyne Phosphoramidites for Multiple 5′-Labeling of Oligonucleotides by Click Chemistry. European J Org Chem 2012. [DOI: 10.1002/ejoc.201101763] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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32
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Chen Y, Vedala H, Kotchey GP, Audfray A, Cecioni S, Imberty A, Vidal S, Star A. Electronic detection of lectins using carbohydrate-functionalized nanostructures: graphene versus carbon nanotubes. ACS NANO 2012; 6:760-70. [PMID: 22136380 PMCID: PMC3265614 DOI: 10.1021/nn2042384] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Here we investigated the interactions between lectins and carbohydrates using field-effect transistor (FET) devices comprised of chemically converted graphene (CCG) and single-walled carbon nanotubes (SWNTs). Pyrene- and porphyrin-based glycoconjugates were functionalized noncovalently on the surface of CCG-FET and SWNT-FET devices, which were then treated with 2 μM nonspecific and specific lectins. In particular, three different lectins (PA-IL, PA-IIL, and ConA) and three carbohydrate epitopes (galactose, fucose, and mannose) were tested. The responses of 36 different devices were compared and rationalized using computer-aided models of carbon nanostructure/glycoconjugate interactions. Glycoconjugate surface coverage in addition to one-dimensional structures of SWNTs resulted in optimal lectin detection. Additionally, lectin titration data of SWNT- and CCG-based biosensors were used to calculate lectin dissociation constants (K(d)) and compare them to the values obtained from the isothermal titration microcalorimetry technique.
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Affiliation(s)
- Yanan Chen
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA
| | - Harindra Vedala
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA
| | - Gregg P. Kotchey
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA
| | - Aymeric Audfray
- CERMAV - CNRS, affiliated with Université Joseph Fourier and ICMG, BP 53, 38041, Grenoble, France
| | - Samy Cecioni
- CERMAV - CNRS, affiliated with Université Joseph Fourier and ICMG, BP 53, 38041, Grenoble, France
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 – Glycochimie, UMR 5246, CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
| | - Anne Imberty
- CERMAV - CNRS, affiliated with Université Joseph Fourier and ICMG, BP 53, 38041, Grenoble, France
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 – Glycochimie, UMR 5246, CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
| | - Alexander Star
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA
- Corresponding author footnote:
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33
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Morvan F, Vidal S, Souteyrand E, Chevolot Y, Vasseur JJ. DNA glycoclusters and DNA-based carbohydrate microarrays: From design to applications. RSC Adv 2012. [DOI: 10.1039/c2ra21550k] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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34
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Morvan F, Chevolot Y, Zhang J, Meyer A, Vidal S, Praly JP, Vasseur JJ, Souteyrand E. Glycoarray by DNA-directed immobilization. Methods Mol Biol 2012; 808:195-219. [PMID: 22057527 DOI: 10.1007/978-1-61779-373-8_14] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Glycoarrays have become a powerful platform to investigate the interactions of many biological events involving carbohydrates. The carbohydrates immobilization on the surface of the substrates is a key step of glycoarray fabrication. Plenty of strategies have been applied to the immobilization process. Herein a protocol for the synthesis of oligonucleotide glycomimetic conjugates is proposed. The resulting molecules are immobilized by hybridization on a DNA microarray (DNA-directed immobilization; DDI). DDI has been proved to be a very efficient and site-selective. This protocol provides detailed procedures for the preparation of fluorescent oligonucleotide trigalactosylmimetic conjugates and for the preparation of carbohydrate microarrays by DDI on glass slides.
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Affiliation(s)
- François Morvan
- Institut des Biomoléules Max Mousseron, UMR 5247, CNRS Université Montpellier 1, Université Montpellier 2, Montpellier, France
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35
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Bossu I, Berthet N, Dumy P, Renaudet O. Synthesis of Glycocyclopeptides by Click Chemistry and Inhibition Assays with Lectins. J Carbohydr Chem 2011. [DOI: 10.1080/07328303.2011.590260] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Isabelle Bossu
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Nathalie Berthet
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Pascal Dumy
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Olivier Renaudet
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
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36
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Wang Y, Yu G, Han Z, Yang B, Hu Y, Zhao X, Wu J, Lv Y, Chai W. Specificities of Ricinus communis agglutinin 120 interaction with sulfated galactose. FEBS Lett 2011; 585:3927-34. [PMID: 22079878 DOI: 10.1016/j.febslet.2011.10.035] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2011] [Revised: 10/18/2011] [Accepted: 10/19/2011] [Indexed: 01/17/2023]
Abstract
Lectins are used extensively as research tools to detect and target specific oligosaccharide sequences. Ricinus communis agglutinin I (RCA(120)) recognizes non-reducing terminal β-D-galactose (Galβ) and its specificities of interactions with neutral and sialylated oligosaccharides have been well documented. Here we use carbohydrate arrays of sulfated Galβ-containing oligosaccharide probes, prepared from marine-derived galactans, to investigate their interactions with RCA(120). Our results showed that RCA(120) binding to Galβ1-4 was enhanced by 2-O- or 6-O-sulfation but abolished by 4-O-sulfation. The results were corroborated with competition experiments. Erythrina cristagalli lectin is also a Galβ-binding protein but it cannot accommodate any sulfation on Galβ.
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Affiliation(s)
- Yufeng Wang
- Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, and Key Laboratory of Marine Drugs, Ministry of Education, Ocean University of China, Qingdao, China
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37
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Consoli GM, Granata G, Cafiso V, Stefani S, Geraci C. Multivalent calixarene-based C-fucosyl derivative: a new Pseudomonas aeruginosa biofilm inhibitor. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.08.142] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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38
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Soomro ZH, Cecioni S, Blanchard H, Praly JP, Imberty A, Vidal S, Matthews SE. CuAAC synthesis of resorcin[4]arene-based glycoclusters as multivalent ligands of lectins. Org Biomol Chem 2011; 9:6587-97. [PMID: 21837347 DOI: 10.1039/c1ob05676j] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Synthetic multivalent glycoclusters show promise as anti-adhesives for the treatment of bacterial infections. Here we report the synthesis of a family of tetravalent galactose and lactose functionalised macrocycles based on the resorcin[4]arene core. The development of diastereoselective synthetic routes for the formation of lower-rim propargylated resorcin[4]arenes and their functionalistion via Cu-catalyzed azide-alkyne click chemistry is described. ELLA binding studies confirm that galactose sugar clusters are effective ligands for the PA-IL bacterial lectin of Pseudomonas aeruginosa while poor binding for the lactose-based monovalent probe and no binding could be measured for the multivalent glycoclusters was observed for the human galectin-1.
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Affiliation(s)
- Zahid H Soomro
- School of Pharmacy, University of East Anglia, Norwich, UK NR4 7TJ
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Galante E, Geraci C, Sciuto S, Campo VL, Carvalho I, Sesti-Costa R, Guedes PM, Silva JS, Hill L, Nepogodiev SA, Field RA. Glycoclusters presenting lactose on calix[4]arene cores display trypanocidal activity. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.06.065] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Pourceau G, Chevolot Y, Goudot A, Giroux F, Meyer A, Moulés V, Lina B, Cecioni S, Vidal S, Yu H, Chen X, Ferraris O, Praly JP, Souteyrand E, Vasseur JJ, Morvan F. Measurement of Enzymatic Activity and Specificity of Human and Avian Influenza Neuraminidases from Whole Virus by Glycoarray and MALDI-TOF Mass Spectrometry. Chembiochem 2011; 12:2071-80. [DOI: 10.1002/cbic.201100128] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2011] [Indexed: 01/12/2023]
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41
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Chabre YM, Giguère D, Blanchard B, Rodrigue J, Rocheleau S, Neault M, Rauthu S, Papadopoulos A, Arnold AA, Imberty A, Roy R. Combining Glycomimetic and Multivalent Strategies toward Designing Potent Bacterial Lectin Inhibitors. Chemistry 2011; 17:6545-62. [DOI: 10.1002/chem.201003402] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2010] [Indexed: 12/13/2022]
Affiliation(s)
- Yoann M. Chabre
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Denis Giguère
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Bertrand Blanchard
- CERMAV CNRS (Affiliated to Université Joseph Fourier and belonging to ICMG), BP 53, 38041 Grenoble cedex 9 (France), Fax: (+33) 476‐547‐203
| | - Jacques Rodrigue
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Sylvain Rocheleau
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Mathieu Neault
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Subhash Rauthu
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Alex Papadopoulos
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Alexandre A. Arnold
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
| | - Anne Imberty
- CERMAV CNRS (Affiliated to Université Joseph Fourier and belonging to ICMG), BP 53, 38041 Grenoble cedex 9 (France), Fax: (+33) 476‐547‐203
| | - René Roy
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre‐Ville, Montreal, Québec, H3C 3P8 (Canada), Fax: (+1) 514‐987‐4054
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Cecioni S, Oerthel V, Iehl J, Holler M, Goyard D, Praly JP, Imberty A, Nierengarten JF, Vidal S. Synthesis of dodecavalent fullerene-based glycoclusters and evaluation of their binding properties towards a bacterial lectin. Chemistry 2011; 17:3252-61. [PMID: 21328503 DOI: 10.1002/chem.201003258] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2010] [Indexed: 02/03/2023]
Abstract
Multivalency is playing a major role in biological processes and particularly in lectin-carbohydrate interactions. The design of high-affinity ligands of lectins should provide molecules capable of interfering with these biological processes and potentially inhibit bacterial or viral infections. Azide-alkyne "click" chemistry was applied to the synthesis of dodecavalent fullerene-based glycoclusters. The conjugation could be efficiently performed from alkyne or azide functions on either partners (i.e. hexakis-fullerene adduct or glycoside). PA-IL is a bacterial lectin from the opportunistic pathogen Pseudomonas aeruginosa and is involved in the recognition of glycoconjugates on human tissues. The glycoclusters obtained were evaluated as ligands of PA-IL and for their potential for competing with its binding to glycosylated surfaces. The affinities measured by hemagglutination inhibition assay (HIA), enzyme-linked lectin assay (ELLA), and surface plasmon resonance (SPR) displayed a significant "glycoside cluster effect" with up to a 12,000-fold increase in binding when comparing a monovalent carbohydrate reference probe with a dodecavalent fullerene-based glycocluster, albeit with some differences depending on the analytical technique.
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Affiliation(s)
- Samy Cecioni
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie, Organique 2-Glycochimie, UMR 5246, Université Claude Bernard Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
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Kiviniemi A, Virta P, Lönnberg H. Solid-supported synthesis and click conjugation of 4'-C-alkyne functionalized oligodeoxyribonucleotides. Bioconjug Chem 2011; 21:1890-901. [PMID: 20828203 DOI: 10.1021/bc100268w] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
4'-C-[N,N-Di(4-pentyn-1-yl)aminomethyl]thymidine and 4'-C-[N-methyl-N-(4-pentyn-1-yl)aminomethyl]thymidine 3'-(2-cyanoethyl-N,N-diisopropyl)phosphoramidites (1, 2) were synthesized, and one or two such monomers were incorporated into a 15-mer oligodeoxyribonucleotide. After chain assembly, azido-functionalized ligands, including appropriate derivatives of 1,4-phenylenedimethaneamine, mannose, paromamine, and neomycin, were conjugated to the alkynyl groups by the click chemistry on a solid support. The influence of the 4'-modifications on the melting temperature with DNA and 2'-O-methyl RNA targets was studied. Oligonucleotides containing one to four mannose ligands in the central part of the chain (up to two 4'-C-[N,N-di(4-pentyn-1-yl)aminomethyl]thymidine units) form equally stable duplexes with complementary 2'-OMe RNA as the corresponding unmodified DNA sequence. At high salt content, the mannose conjugation is even stabilizing. On using a DNA target, a modest destabilization occurs. All the amino group bearing conjugates stabilized the duplexes, the DNA·DNA duplexes more than the DNA·2'-O-methyl RNA duplexes.
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Affiliation(s)
- Anu Kiviniemi
- Department of Chemistry, University of Turku, Turku, Finland
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Pourceau G, Meyer A, Chevolot Y, Souteyrand E, Vasseur JJ, Morvan F. Oligonucleotide carbohydrate-centered galactosyl cluster conjugates synthesized by click and phosphoramidite chemistries. Bioconjug Chem 2011; 21:1520-9. [PMID: 20715856 DOI: 10.1021/bc1001888] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Oligonucleotide glycoconjugates with a mannose or galactose core bearing four galactose residues introduced by phosphoramidite chemistry and copper catalyzed azide alkyne 1,3-dipolar cycloaddition (click chemistry) have been synthesized. A first click reaction allowed the introduction on a solid support of a mannose core on which four pentynyl linkers were introduced using a phosphoramidite derivative. After the elongation of the oligonucleotide, a second click reaction performed either on solid support or in solution allowed the introduction of four galactose azide derivatives. Repeating the phosphoramidite and click chemistries afforded an oligonucleotide glycoconjugate dendrimer bearing 16 galactoses on its periphery.
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Affiliation(s)
- Gwladys Pourceau
- Institut des Biomolecules Max Mousseron, UMR 5247 CNRS, Universite Montpellier 1, Place Eugene Bataillon, Montpellier Cedex 5, France
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45
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Deniaud D, Julienne K, Gouin SG. Insights in the rational design of synthetic multivalent glycoconjugates as lectin ligands. Org Biomol Chem 2011; 9:966-79. [DOI: 10.1039/c0ob00389a] [Citation(s) in RCA: 124] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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46
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Sicard D, Cecioni S, Iazykov M, Chevolot Y, Matthews SE, Praly JP, Souteyrand E, Imberty A, Vidal S, Phaner-Goutorbe M. AFM investigation of Pseudomonas aeruginosa lectin LecA (PA-IL) filaments induced by multivalent glycoclusters. Chem Commun (Camb) 2011; 47:9483-5. [DOI: 10.1039/c1cc13097h] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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47
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Reynolds M, Pérez S. Thermodynamics and chemical characterization of protein–carbohydrate interactions: The multivalency issue. CR CHIM 2011. [DOI: 10.1016/j.crci.2010.05.020] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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48
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Chevolot Y, Zhang J, Meyer A, Goudot A, Rouanet S, Vidal S, Pourceau G, Cloarec JP, Praly JP, Souteyrand E, Vasseur JJ, Morvan F. Multiplexed binding determination of seven glycoconjugates for Pseudomonas aeruginosa Lectin I (PA-IL) using a DNA-based carbohydrate microarray. Chem Commun (Camb) 2011; 47:8826-8. [DOI: 10.1039/c1cc12428e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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49
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Dondoni A, Marra A. Calixarene and calixresorcarene glycosides: their synthesis and biological applications. Chem Rev 2010; 110:4949-77. [PMID: 20496911 DOI: 10.1021/cr100027b] [Citation(s) in RCA: 197] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alessandro Dondoni
- Dipartimento di Chimica, Laboratorio di Chimica Organica, Universita di Ferrara, Via L. Borsari 46, 44100 Ferrara, Italy.
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50
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Parera Pera N, Branderhorst HM, Kooij R, Maierhofer C, van der Kaaden M, Liskamp RMJ, Wittmann V, Ruijtenbeek R, Pieters RJ. Rapid Screening of Lectins for Multivalency Effects with a Glycodendrimer Microarray. Chembiochem 2010; 11:1896-904. [DOI: 10.1002/cbic.201000340] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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