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Ortega‐Rojas MA, Castillo E, Razo‐Hernández RS, Pastor N, Juaristi E, Escalante J. Effect of the Substituent and Amino Group Position on the Lipase‐Catalyzed Resolution of γ‐Amino Esters: A Molecular Docking Study Shedding Light on
Candida antarctica
lipase B Enantioselectivity. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100712] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Marina A. Ortega‐Rojas
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigaciones Químicas Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Edmundo Castillo
- Departamento de Ingeniería Celular y Biocatálisis Instituto de Biotecnología UNAM Apartado Postal 510–3 C.P. 62271 Cuernavaca Morelos México
| | - Rodrigo Said Razo‐Hernández
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigación en Dinámica Celular Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Nina Pastor
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigación en Dinámica Celular Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
| | - Eusebio Juaristi
- Departamento de Química Centro de Investigación y de Estudios Avanzados Av. Instituto Politécnico Nacional No. 2508 07360 Ciudad de México México
- El Colegio Nacional Luis González Obregón 23, Centro Histórico 06020 Ciudad de México México
| | - Jaime Escalante
- Instituto de Investigación en Ciencias Básicas y Aplicadas Centro de Investigaciones Químicas Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Col. Chamilpa C.P. 62210 Cuernavaca Morelos México
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2
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Preparation of photo-crosslinkable cinnamate modified hyaluronic acid for immobilization of horseradish peroxidase. Process Biochem 2020. [DOI: 10.1016/j.procbio.2019.10.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Affiliation(s)
- Mark R. Petchey
- York Structural Biology Laboratory, Department of Chemistry University of York Heslington, York YO10 5DD U.K
| | - Gideon Grogan
- York Structural Biology Laboratory, Department of Chemistry University of York Heslington, York YO10 5DD U.K
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4
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Versatility of Candida antarctica lipase in the amide bond formation applied in organic synthesis and biotechnological processes. MOLECULAR CATALYSIS 2019. [DOI: 10.1016/j.mcat.2019.01.007] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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5
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Barrera Valderrama DI, Doerr M, Daza Espinosa MC. Función de los confórmeros de ataque cercano en la acilación enantioselectiva del (R,S)-propranolol catalizada por lipasa B de Candida antarctica. REVISTA COLOMBIANA DE BIOTECNOLOGÍA 2018. [DOI: 10.15446/rev.colomb.biote.v20n1.73652] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
La lipasa B de Candida antarctica (CalB) se ha utilizado en la acilación quimio- y enantioselectiva del racemato (R,S)-propranolol. CalB tiene enantioselectividad moderada (E=63) por el R-propranolol. La enantioselectividad, se origina en la reacción de transferencia del grupo acilo desde la serina catalítica, acilada, al propranolol. La fase inicial de esta reacción involucra la formación de complejos de Michaelis y posteriormente conformaciones de ataque cercano. El análisis de las conformaciones de ataque cercano ha permitido en varios casos explicar el origen de la catálisis o reproducir el efecto catalítico. En este trabajo se profundiza en la comprensión la función de las conformaciones de ataque cercano en la enantioselectividad de la acilación del (R,S)-propranolol catalizada por CalB. Para lo anterior se realizó un estudio detallado de los complejos de Michaelis y de las conformaciones de ataque cercano del paso enantioselectivo de la reacción de acilación del (R,S)-propranolol utilizando un protocolo de dinámica molecular QM/MM (SCCDFTB/CHARMM) utilizando 6 distribuciones de velocidades iniciales y simulaciones de 2,5 ns. Se estudiaron 7 complejos CalB-propranolol. Los enlaces de hidrógeno del sitio activo de CalB acilada relevantes para la actividad catalítica fueron estables en todas las simulaciones. Las poblaciones de los complejos de Michaelis y de las conformaciones de ataque cercano son dependientes de la distribución de las velocidades iniciales de la dinámica molecular. La enantioselectividad moderada de CalB acilada, encontrada experimentalmente, puede ser parcialmente atribuida a la alta población de conformaciones de ataque cercano observada para el S-propranolol.
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Pedragosa-Moreau S, Le Flohic A, Thienpondt V, Lefoulon F, Petit AM, Ríos-Lombardía N, Morís F, González-Sabín J. Exploiting the Biocatalytic Toolbox for the Asymmetric Synthesis of the Heart-Rate Reducing Agent Ivabradine. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201601222] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
| | | | | | - François Lefoulon
- Technologie Servier; Research and Biopharmacy Centre; 27 rue Eugène Vignat 45000 Orléans France
| | - Anne-Marie Petit
- Technologie Servier; Research and Biopharmacy Centre; 27 rue Eugène Vignat 45000 Orléans France
| | | | - Francisco Morís
- EntreChem, S.L.; Edificio Científico Tecnológico; Campus El Cristo 33006 Oviedo Spain
| | - Javier González-Sabín
- EntreChem, S.L.; Edificio Científico Tecnológico; Campus El Cristo 33006 Oviedo Spain
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7
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Synergetic effect of Cu and pentacoordinate Al3+ sites: Direct synthesis of ethyl ethoxyacetate via hydrogenation of diethyl oxalate. CATAL COMMUN 2017. [DOI: 10.1016/j.catcom.2016.10.031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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8
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Escorcia AM, Sen K, Daza MC, Doerr M, Thiel W. Quantum Mechanics/Molecular Mechanics Insights into the Enantioselectivity of the O-Acetylation of (R,S)-Propranolol Catalyzed by Candida antarctica Lipase B. ACS Catal 2016. [DOI: 10.1021/acscatal.6b02310] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Andrés M. Escorcia
- Grupo
de Bioquímica Teórica, Universidad Industrial de Santander, Cra 27 Calle 9, Bucaramanga, Colombia
| | - Kakali Sen
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim, Germany
| | - Martha C. Daza
- Grupo
de Bioquímica Teórica, Universidad Industrial de Santander, Cra 27 Calle 9, Bucaramanga, Colombia
| | - Markus Doerr
- Grupo
de Bioquímica Teórica, Universidad Industrial de Santander, Cra 27 Calle 9, Bucaramanga, Colombia
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim, Germany
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9
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Tsai SW. Enantiopreference of Candida antarctica lipase B toward carboxylic acids: Substrate models and enantioselectivity thereof. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2014.07.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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10
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Computational study of the enantioselectivity of the O-acetylation of (R,S)-propranolol catalyzed by Candida antarctica lipase B. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.molcatb.2014.06.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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11
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Preparation of polyphosphazene hydrogels for enzyme immobilization. Molecules 2014; 19:9850-63. [PMID: 25006790 PMCID: PMC6270993 DOI: 10.3390/molecules19079850] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 06/23/2014] [Accepted: 06/24/2014] [Indexed: 01/24/2023] Open
Abstract
We report on the synthesis and application of a new hydrogel based on a methacrylate substituted polyphosphazene. Through ring-opening polymerization and nucleophilic substitution, poly[bis(methacrylate)phosphazene] (PBMAP) was successfully synthesized from hexachlorocyclotriphosphazene. By adding PBMAP to methacrylic acid solution and then treating with UV light, we could obtain a cross-linked polyphosphazene network, which showed an ultra-high absorbency for distilled water. Lipase from Candida rugosa was used as the model lipase for entrapment immobilization in the hydrogel. The influence of methacrylic acid concentration on immobilization efficiency was studied. Results showed that enzyme loading reached a maximum of 24.02 mg/g with an activity retention of 67.25% when the methacrylic acid concentration was 20% (w/w).
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12
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Escorcia AM, Molina D, Daza MC, Doerr M. Acetylation of (R,S)-propranolol catalyzed by Candida antarctica lipase B: An experimental and computational study. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2013.09.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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13
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Lu X, Li L, Yang W, Jiang K, Yang KF, Zheng ZJ, Xu LW. Catalytic Synthesis of Functional Silicon-Stereogenic Silanes throughCandida antarcticaLipase B Catalyzed Remote Desymmetrization of Silicon-Centered Diols. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300932] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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14
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Elsässer B, Schoenen I, Fels G. Comparative Theoretical Study of the Ring-Opening Polymerization of Caprolactam vs Caprolactone Using QM/MM Methods. ACS Catal 2013. [DOI: 10.1021/cs3008297] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Brigitta Elsässer
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
| | - Iris Schoenen
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
| | - Gregor Fels
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
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15
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Martínez-Montero S, Fernández S, Sanghvi YS, Gotor V, Ferrero M. CAL-B-Catalyzed Acylation of Nucleosides and Role of the Sugar Conformation: An Improved Understanding of the Enzyme-Substrate Recognition. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200609] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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16
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Chaput L, Sanejouand YH, Balloumi A, Tran V, Graber M. Contribution of both catalytic constant and Michaelis constant to CALB enantioselectivity: Use of FEP calculations for prediction studies. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/j.molcatb.2011.11.020] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Baum I, Elsässer B, Schwab LW, Loos K, Fels G. Atomistic Model for the Polyamide Formation from β-Lactam Catalyzed by Candida antarctica Lipase B. ACS Catal 2011. [DOI: 10.1021/cs1000398] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Iris Baum
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
| | - Brigitta Elsässer
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
| | - Leendert W. Schwab
- Department of Polymer Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747, AG Groningen, The Netherlands
| | - Katja Loos
- Department of Polymer Chemistry and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747, AG Groningen, The Netherlands
| | - Gregor Fels
- Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
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18
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Martínez-Montero S, Fernández S, Sanghvi YS, Gotor V, Ferrero M. Enzymatic Parallel Kinetic Resolution of Mixtures of d/l 2′-Deoxy and Ribonucleosides: An Approach for the Isolation of β-l-Nucleosides. J Org Chem 2010; 75:6605-13. [DOI: 10.1021/jo101368z] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Saúl Martínez-Montero
- Departamento de Química Orgánica e Inorgánica and Instituto Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006-Oviedo (Asturias), Spain
| | - Susana Fernández
- Departamento de Química Orgánica e Inorgánica and Instituto Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006-Oviedo (Asturias), Spain
| | - Yogesh S. Sanghvi
- Rasayan Inc., 2802 Crystal Ridge Road, Encinitas, California 92024-6615
| | - Vicente Gotor
- Departamento de Química Orgánica e Inorgánica and Instituto Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006-Oviedo (Asturias), Spain
| | - Miguel Ferrero
- Departamento de Química Orgánica e Inorgánica and Instituto Universitario de Biotecnología de Asturias, Universidad de Oviedo, 33006-Oviedo (Asturias), Spain
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Rodríguez-Mata M, García-Urdiales E, Gotor-Fernández V, Gotor V. Stereoselective Chemoenzymatic Preparation of β-Amino Esters: Molecular Modelling Considerations in Lipase-Mediated Processes and Application to the Synthesis of (S)-Dapoxetine. Adv Synth Catal 2010. [DOI: 10.1002/adsc.200900676] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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20
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Current awareness on yeast. Yeast 2010. [DOI: 10.1002/yea.1713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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21
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Cardillo G, Gennari A, Gentilucci L, Mosconi E, Tolomelli A, Troisi S. Synthesis of chiral non-racemic intermediates and Arg-Gly-Asp mimetics by CaLB-catalyzed resolution. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2009.12.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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22
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GarcÃa-Urdiales E, Busto E, RÃos-LombardÃa N, Gotor-Fernández V, Gotor V. Computational Study of the Lipase-Mediated Desymmetrisation of 2-Substituted-Propane-1,3-Diamines. Chembiochem 2009; 10:2875-83. [DOI: 10.1002/cbic.200900412] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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