1
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Manickavasagam G, He C, Lin KYA, Saaid M, Oh WD. Recent advances in catalyst design, performance, and challenges of metal-heteroatom-co-doped biochar as peroxymonosulfate activator for environmental remediation. ENVIRONMENTAL RESEARCH 2024; 252:118919. [PMID: 38631468 DOI: 10.1016/j.envres.2024.118919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/02/2024] [Accepted: 04/10/2024] [Indexed: 04/19/2024]
Abstract
The escalation of global water pollution due to emerging pollutants has gained significant attention. To address this issue, catalytic peroxymonosulfate (PMS) activation technology has emerged as a promising treatment approach for effectively decontaminating a wide range of pollutants. Recently, modified biochar has become an increasingly attractive as PMS activator. Metal-heteroatom-co-doped biochar (MH-BC) has emerged as a promising catalyst that can provide enhanced performance over heteroatom-doped and metal-doped biochar due to the synergism between metal and heteroatom in promoting PMS activation. Therefore, this review aims to discuss the fabrication pathways (i.e., internal vs external doping and pre-vs post-modification) and key parameters (i.e., source of precursors, synthesis methods, and synthesis conditions) affecting the performance of MH-BC as PMS activator. Subsequently, an overview of all the possible PMS activation pathways by MH-BC is provided. Subsequently, Also, the detection, identification, and quantification of several reactive species (such as, •OH, SO4•-, O2•-, 1O2, and high valent oxo species) generated in the catalytic PMS system by MH-BC are also evaluated. Lastly, the underlying challenges associated with poor stability, the lack of understanding regarding the interaction between metal and heteroatom during PMS activation and quantification of radicals in multi-ROS system are also deliberated.
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Affiliation(s)
| | - Chao He
- Faculty of Engineering and Natural Sciences, Tampere University, Tampere, Finland
| | - Kun-Yi Andrew Lin
- Department of Environmental Engineering & Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, 250, Kuo-Kuang Road, Taichung, Taiwan; Institute of Analytical and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
| | - Mardiana Saaid
- School of Chemical Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia
| | - Wen-Da Oh
- School of Chemical Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia.
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2
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Pore S, Banerjee A, Roy K. Application of machine learning-based read-across structure-property relationship (RASPR) as a new tool for predictive modelling: Prediction of power conversion efficiency (PCE) for selected classes of organic dyes in dye-sensitized solar cells (DSSCs). Mol Inform 2024; 43:e202300210. [PMID: 38374528 DOI: 10.1002/minf.202300210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 12/31/2023] [Accepted: 02/04/2024] [Indexed: 02/21/2024]
Abstract
The application of various in-silico-based approaches for the prediction of various properties of materials has been an effective alternative to experimental methods. Recently, the concepts of Quantitative structure-property relationship (QSPR) and read-across (RA) methods were merged to develop a new emerging chemoinformatic tool: read-across structure-property relationship (RASPR). The RASPR method can be applicable to both large and small datasets as it uses various similarity and error-based measures. It has also been observed that RASPR models tend to have an increased external predictivity compared to the corresponding QSPR models. In this study, we have modeled the power conversion efficiency (PCE) of organic dyes used in dye-sensitized solar cells (DSSCs) by using the quantitative RASPR (q-RASPR) method. We have used relatively larger classes of organic dyes-Phenothiazines (n=207), Porphyrins (n=281), and Triphenylamines (n=229) for the modelling purpose. We have divided each of the datasets into training and test sets in 3 different combinations, and with the training sets we have developed three different QSPR models with structural and physicochemical descriptors and validated them with the corresponding test sets. These corresponding modeled descriptors were used to calculate the RASPR descriptors using a Java-based tool RASAR Descriptor Calculator v2.0 (https://sites.google.com/jadavpuruniversity.in/dtc-lab-software/home), and then data fusion was performed by pooling the previously selected structural and physicochemical descriptors with the calculated RASPR descriptors. Further feature selection algorithm was employed to develop the final RASPR PLS models. Here, we also developed different machine learning (ML) models with the descriptors selected in the QSPR PLS and RASPR PLS models, and it was found that models with RASPR descriptors superseded in external predictivity the models with only structural and physicochemical descriptors: RMSEP reduced for phenothiazines from 1.16-1.25 to 1.07-1.18, for porphyrins from 1.60-1.79 to 1.45-1.53, for triphenylamines from 1.27-1.54 to 1.20-1.47.
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Affiliation(s)
- Souvik Pore
- Drug Theoretics and Chemoinformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, 188 Raja S C Mullick Road, 700032, Kolkata, India
| | - Arkaprava Banerjee
- Drug Theoretics and Chemoinformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, 188 Raja S C Mullick Road, 700032, Kolkata, India
| | - Kunal Roy
- Drug Theoretics and Chemoinformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, 188 Raja S C Mullick Road, 700032, Kolkata, India
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3
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Miyazaki R, Belthle KS, Tüysüz H, Foppa L, Scheffler M. Materials Genes of CO 2 Hydrogenation on Supported Cobalt Catalysts: An Artificial Intelligence Approach Integrating Theoretical and Experimental Data. J Am Chem Soc 2024; 146:5433-5444. [PMID: 38374731 PMCID: PMC10910553 DOI: 10.1021/jacs.3c12984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 02/06/2024] [Accepted: 02/08/2024] [Indexed: 02/21/2024]
Abstract
Designing materials for catalysis is challenging because the performance is governed by an intricate interplay of various multiscale phenomena, such as the chemical reactions on surfaces and the materials' restructuring during the catalytic process. In the case of supported catalysts, the role of the support material can be also crucial. Here, we address this intricacy challenge by a symbolic-regression artificial intelligence (AI) approach. We identify the key physicochemical parameters correlated with the measured performance, out of many offered candidate parameters characterizing the materials, reaction environment, and possibly relevant underlying phenomena. Importantly, these parameters are obtained by both experiments and ab initio simulations. The identified key parameters might be called "materials genes", in analogy to genes in biology: they correlate with the property or function of interest, but the explicit physical relationship is not (necessarily) known. To demonstrate the approach, we investigate the CO2 hydrogenation catalyzed by cobalt nanoparticles supported on silica. Crucially, the silica support is modified with the additive metals magnesium, calcium, titanium, aluminum, or zirconium, which results in six materials with significantly different performances. These systems mimic hydrothermal vents, which might have produced the first organic molecules on Earth. The key parameters correlated with the CH3OH selectivity reflect the reducibility of cobalt species, the adsorption strength of reaction intermediates, and the chemical nature of the additive metal. By using an AI model trained on basic elemental properties of the additive metals (e.g., ionization potential) as physicochemical parameters, new additives are suggested. The predicted CH3OH selectivity of cobalt catalysts supported on silica modified with vanadium and zinc is confirmed by new experiments.
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Affiliation(s)
- Ray Miyazaki
- The
NOMAD Laboratory at the Fritz-Haber-Institut of the Max-Planck-Gesellschaft
and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, Berlin 14195, Germany
| | - Kendra S Belthle
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, Mülheim an
der Ruhr 45470, Germany
| | - Harun Tüysüz
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, Mülheim an
der Ruhr 45470, Germany
| | - Lucas Foppa
- The
NOMAD Laboratory at the Fritz-Haber-Institut of the Max-Planck-Gesellschaft
and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, Berlin 14195, Germany
| | - Matthias Scheffler
- The
NOMAD Laboratory at the Fritz-Haber-Institut of the Max-Planck-Gesellschaft
and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, Berlin 14195, Germany
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4
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Wang G, Mine S, Chen D, Jing Y, Ting KW, Yamaguchi T, Takao M, Maeno Z, Takigawa I, Matsushita K, Shimizu KI, Toyao T. Accelerated discovery of multi-elemental reverse water-gas shift catalysts using extrapolative machine learning approach. Nat Commun 2023; 14:5861. [PMID: 37735169 PMCID: PMC10514199 DOI: 10.1038/s41467-023-41341-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 08/28/2023] [Indexed: 09/23/2023] Open
Abstract
Designing novel catalysts is key to solving many energy and environmental challenges. Despite the promise that data science approaches, including machine learning (ML), can accelerate the development of catalysts, truly novel catalysts have rarely been discovered through ML approaches because of one of its most common limitations and criticisms-the assumed inability to extrapolate and identify extraordinary materials. Herein, we demonstrate an extrapolative ML approach to develop new multi-elemental reverse water-gas shift catalysts. Using 45 catalysts as the initial data points and performing 44 cycles of the closed loop discovery system (ML prediction + experiment), we experimentally tested a total of 300 catalysts and identified more than 100 catalysts with superior activity compared to those of the previously reported high-performance catalysts. The composition of the optimal catalyst discovered was Pt(3)/Rb(1)-Ba(1)-Mo(0.6)-Nb(0.2)/TiO2. Notably, niobium (Nb) was not included in the original dataset, and the catalyst composition identified was not predictable even by human experts.
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Affiliation(s)
- Gang Wang
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Shinya Mine
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Duotian Chen
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Yuan Jing
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Kah Wei Ting
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Taichi Yamaguchi
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Motoshi Takao
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan
| | - Zen Maeno
- School of Advanced Engineering, Kogakuin University, 2665-1, Nakano-cho, Hachioji, 192-0015, Japan
| | - Ichigaku Takigawa
- RIKEN Center for Advanced Intelligence Project, 1-4-1 Nihonbashi, Chuo-ku, Tokyo, 103-0027, Japan.
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan.
- Institute for Liberal Arts and Sciences, Kyoto University, 69-302, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 606-8315, Japan.
| | - Koichi Matsushita
- Central Technical Research Laboratory, ENEOS Corporation, 8, Chidori-cho, Naka-ku, Yokohama, 231-0815, Japan
| | - Ken-Ichi Shimizu
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan.
| | - Takashi Toyao
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, 001-0021, Japan.
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5
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Tsuji Y, Yoshioka Y, Okazawa K, Yoshizawa K. Exploring Metal Nanocluster Catalysts for Ammonia Synthesis Using Informatics Methods: A Concerted Effort of Bayesian Optimization, Swarm Intelligence, and First-Principles Computation. ACS OMEGA 2023; 8:30335-30348. [PMID: 37636907 PMCID: PMC10448644 DOI: 10.1021/acsomega.3c03456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 07/21/2023] [Indexed: 08/29/2023]
Abstract
This paper details the use of computational and informatics methods to design metal nanocluster catalysts for efficient ammonia synthesis. Three main problems are tackled: defining a measure of catalytic activity, choosing the best candidate from a large number of possibilities, and identifying the thermodynamically stable cluster catalyst structure. First-principles calculations, Bayesian optimization, and particle swarm optimization are used to obtain a Ti8 nanocluster as a catalyst candidate. The N2 adsorption structure on Ti8 indicates substantial activation of the N2 molecule, while the NH3 adsorption structure suggests that NH3 is likely to undergo easy desorption. The study also reveals several cluster catalyst candidates that break the general trade-off that surfaces that strongly adsorb reactants also strongly adsorb products.
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Affiliation(s)
- Yuta Tsuji
- Faculty
of Engineering Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
| | - Yuta Yoshioka
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kazuki Okazawa
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
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6
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Takahashi K, Ohyama J, Nishimura S, Fujima J, Takahashi L, Uno T, Taniike T. Catalysts informatics: paradigm shift towards data-driven catalyst design. Chem Commun (Camb) 2023; 59:2222-2238. [PMID: 36723221 DOI: 10.1039/d2cc05938j] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Designing catalysts is a challenging matter as catalysts are involved with various factors that impact synthesis, catalysts, reactor and reaction. In order to overcome these difficulties, catalysts informatics is proposed as an alternative way to design and understand catalysts. The underlying concept of catalysts informatics is to design the catalysts from trends and patterns found in catalysts data. Here, three key concepts are introduced: experimental catalysts database, knowledge extraction from catalyst data via data science, and a catalysts informatics platform. Methane oxidation is chosen as a prototype reaction for demonstrating various aspects of catalysts informatics. This work summarizes how catalysts informatics plays a role in catalyst design. The work covers big data generation via high throughput experiments, machine learning, catalysts network method, catalyst design from small data, catalysts informatics platform, and the future of catalysts informatics via ontology. Thus, the proposed catalysts informatics would help innovate how catalysts can be designed and understood.
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Affiliation(s)
- Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan.
| | - Junya Ohyama
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, 860-8555, Japan
| | - Shun Nishimura
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Jun Fujima
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan.
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan.
| | - Takeaki Uno
- National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, 101-8430, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
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7
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Tran R, Lan J, Shuaibi M, Wood BM, Goyal S, Das A, Heras-Domingo J, Kolluru A, Rizvi A, Shoghi N, Sriram A, Therrien F, Abed J, Voznyy O, Sargent EH, Ulissi Z, Zitnick CL. The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalysts. ACS Catal 2023. [DOI: 10.1021/acscatal.2c05426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Affiliation(s)
- Richard Tran
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
| | - Janice Lan
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Muhammed Shuaibi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Brandon M. Wood
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Siddharth Goyal
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Abhishek Das
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Javier Heras-Domingo
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
| | - Adeesh Kolluru
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
| | - Ammar Rizvi
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Nima Shoghi
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Anuroop Sriram
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
| | - Félix Therrien
- Department of Electrical and Computer Engineering, University of Toronto, 10 King’s College Road, Toronto, Ontario M5S 3G4, Canada
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Scarborough, Ontario M1C 1A4, Canada
| | - Jehad Abed
- Department of Electrical and Computer Engineering, University of Toronto, 10 King’s College Road, Toronto, Ontario M5S 3G4, Canada
- Department of Materials Science and Engineering, University of Toronto, 10 King’s College Road, Toronto, Ontario M5S 3G4, Canada
| | - Oleksandr Voznyy
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Scarborough, Ontario M1C 1A4, Canada
| | - Edward H. Sargent
- Department of Electrical and Computer Engineering, University of Toronto, 10 King’s College Road, Toronto, Ontario M5S 3G4, Canada
| | - Zachary Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15217, United States
- Scott Institute for Energy Innovation, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - C. Lawrence Zitnick
- Fundamental AI Research, Meta AI, Menlo Park, California 94025, United States
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8
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Foppa L, Rüther F, Geske M, Koch G, Girgsdies F, Kube P, Carey SJ, Hävecker M, Timpe O, Tarasov AV, Scheffler M, Rosowski F, Schlögl R, Trunschke A. Data-Centric Heterogeneous Catalysis: Identifying Rules and Materials Genes of Alkane Selective Oxidation. J Am Chem Soc 2023; 145:3427-3442. [PMID: 36745555 PMCID: PMC9936587 DOI: 10.1021/jacs.2c11117] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Artificial intelligence (AI) can accelerate catalyst design by identifying key physicochemical descriptive parameters correlated with the underlying processes triggering, favoring, or hindering the performance. In analogy to genes in biology, these parameters might be called "materials genes" of heterogeneous catalysis. However, widely used AI methods require big data, and only the smallest part of the available data meets the quality requirement for data-efficient AI. Here, we use rigorous experimental procedures, designed to consistently take into account the kinetics of the catalyst active states formation, to measure 55 physicochemical parameters as well as the reactivity of 12 catalysts toward ethane, propane, and n-butane oxidation reactions. These materials are based on vanadium or manganese redox-active elements and present diverse phase compositions, crystallinities, and catalytic behaviors. By applying the sure-independence-screening-and-sparsifying-operator symbolic-regression approach to the consistent data set, we identify nonlinear property-function relationships depending on several key parameters and reflecting the intricate interplay of processes that govern the formation of olefins and oxygenates: local transport, site isolation, surface redox activity, adsorption, and the material dynamical restructuring under reaction conditions. These processes are captured by parameters derived from N2 adsorption, X-ray photoelectron spectroscopy (XPS), and near-ambient-pressure in situ XPS. The data-centric approach indicates the most relevant characterization techniques to be used for catalyst design and provides "rules" on how the catalyst properties may be tuned in order to achieve the desired performance.
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Affiliation(s)
- Lucas Foppa
- The
NOMAD Laboratory at the Fritz-Haber-Institut of the Max-Planck-Gesellschaft
and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, D-14195 Berlin, Germany,
| | - Frederik Rüther
- BasCat
- UniCat BASF JointLab, Hardenbergstraße 36, D-10623 Berlin, Germany
| | - Michael Geske
- BasCat
- UniCat BASF JointLab, Hardenbergstraße 36, D-10623 Berlin, Germany
| | - Gregor Koch
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Frank Girgsdies
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Pierre Kube
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Spencer J. Carey
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Michael Hävecker
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany,Max
Planck Institute for Chemical Energy Conversion, 45470 Mülheim, Germany
| | - Olaf Timpe
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Andrey V. Tarasov
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Matthias Scheffler
- The
NOMAD Laboratory at the Fritz-Haber-Institut of the Max-Planck-Gesellschaft
and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Frank Rosowski
- BasCat
- UniCat BASF JointLab, Hardenbergstraße 36, D-10623 Berlin, Germany,BASF
SE, Catalysis Research, Carl-Bosch-Straße 38, D-67065 Ludwigshafen, Germany
| | - Robert Schlögl
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany
| | - Annette Trunschke
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
of the Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin, Germany,
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9
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Okazawa K, Tsuji Y, Kurino K, Yoshida M, Amamoto Y, Yoshizawa K. Exploring the Optimal Alloy for Nitrogen Activation by Combining Bayesian Optimization with Density Functional Theory Calculations. ACS OMEGA 2022; 7:45403-45408. [PMID: 36530308 PMCID: PMC9753506 DOI: 10.1021/acsomega.2c05988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 11/09/2022] [Indexed: 06/17/2023]
Abstract
Binary alloy catalysts have the potential to exhibit higher activity than monometallic catalysts in nitrogen activation reactions. However, owing to the multiple possible combinations of metal elements constituting binary alloys, an exhaustive search for the optimal combination is difficult. In this study, we searched for the optimal binary alloy catalyst for nitrogen activation reactions using a combination of Bayesian optimization and density functional theory calculations. The optimal alloy catalyst proposed by Bayesian optimization had a surface energy of ∼0.2 eV/Å2 and resulted in a low reaction heat for the dissociation of the N≡N bond. We demonstrated that the search for such binary alloy catalysts using Bayesian optimization is more efficient than random search.
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Affiliation(s)
- Kazuki Okazawa
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka819-0395, Japan
| | - Yuta Tsuji
- Faculty
of Engineering Sciences, Kyushu University, Kasuga, Fukuoka816-8580, Japan
| | - Keita Kurino
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka819-0395, Japan
| | - Masataka Yoshida
- Laboratory
for Chemistry and Life Science, Tokyo Institute
of Technology, Midori-ku, Yokohama226-8503, Japan
| | - Yoshifumi Amamoto
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka819-0395, Japan
| | - Kazunari Yoshizawa
- Institute
for Materials Chemistry and Engineering and IRCCS, Kyushu University, Nishi-ku, Fukuoka819-0395, Japan
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10
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Ismail I, Chantreau Majerus R, Habershon S. Graph-Driven Reaction Discovery: Progress, Challenges, and Future Opportunities. J Phys Chem A 2022; 126:7051-7069. [PMID: 36190262 PMCID: PMC9574932 DOI: 10.1021/acs.jpca.2c06408] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 09/22/2022] [Indexed: 11/29/2022]
Abstract
Graph-based descriptors, such as bond-order matrices and adjacency matrices, offer a simple and compact way of categorizing molecular structures; furthermore, such descriptors can be readily used to catalog chemical reactions (i.e., bond-making and -breaking). As such, a number of graph-based methodologies have been developed with the goal of automating the process of generating chemical reaction network models describing the possible mechanistic chemistry in a given set of reactant species. Here, we outline the evolution of these graph-based reaction discovery schemes, with particular emphasis on more recent methods incorporating graph-based methods with semiempirical and ab initio electronic structure calculations, minimum-energy path refinements, and transition state searches. Using representative examples from homogeneous catalysis and interstellar chemistry, we highlight how these schemes increasingly act as "virtual reaction vessels" for interrogating mechanistic questions. Finally, we highlight where challenges remain, including issues of chemical accuracy and calculation speeds, as well as the inherent challenge of dealing with the vast size of accessible chemical reaction space.
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Affiliation(s)
- Idil Ismail
- Department of Chemistry, University
of Warwick, CoventryCV4 7AL, United Kingdom
| | | | - Scott Habershon
- Department of Chemistry, University
of Warwick, CoventryCV4 7AL, United Kingdom
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11
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Joshi H, Wilde N, Asche TS, Wolf D. Developing Catalysts via Structure‐Property Relations Discovered by Machine Learning: An Industrial Perspective. CHEM-ING-TECH 2022. [DOI: 10.1002/cite.202200071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hrishikesh Joshi
- Evonik Operations GmbH Rodenbacher Chaussee 4 63457 Hanau Germany
| | - Nicole Wilde
- Evonik Operations GmbH Rodenbacher Chaussee 4 63457 Hanau Germany
| | - Thomas S. Asche
- Evonik Operations GmbH Paul-Baumann-Straße 1 45772 Marl Germany
| | - Dorit Wolf
- Evonik Operations GmbH Rodenbacher Chaussee 4 63457 Hanau Germany
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12
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Ishioka S, Fujiwara A, Nakanowatari S, Takahashi L, Taniike T, Takahashi K. Designing Catalyst Descriptors for Machine Learning in Oxidative Coupling of Methane. ACS Catal 2022. [DOI: 10.1021/acscatal.2c03142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sora Ishioka
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan
| | - Aya Fujiwara
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Sunao Nakanowatari
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-0810, Japan
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13
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Takahashi K, Takahashi L, Le SD, Kinoshita T, Nishimura S, Ohyama J. Synthesis of Heterogeneous Catalysts in Catalyst Informatics to Bridge Experiment and High-Throughput Calculation. J Am Chem Soc 2022; 144:15735-15744. [PMID: 35984913 DOI: 10.1021/jacs.2c06143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The coupling of high-throughput calculations with catalyst informatics is proposed as an alternative way to design heterogeneous catalysts. High-throughput first-principles calculations for the oxidative coupling of methane (OCM) reaction are designed and performed where 1972 catalyst surface planes for the CH4 to CH3 reaction are calculated. Several catalysts for the OCM reaction are designed based on key elements that are unveiled via data visualization and network analysis. Among the designed catalysts, several active catalysts such as CoAg/TiO2, Mg/BaO, and Ti/BaO are found to result in high C2 yield. Results illustrate that designing catalysts using high-throughput calculations is achievable in principle if appropriate trends and patterns within the data generated via high-throughput calculations are identified. Thus, high-throughput calculations in combination with catalyst informatics offer a potential alternative method for catalyst design.
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Affiliation(s)
- Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Son Dinh Le
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi 923-1292, Japan
| | - Takaaki Kinoshita
- Graduate School of Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan
| | - Shun Nishimura
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi 923-1292, Japan
| | - Junya Ohyama
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan
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14
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Nishimura S, Ohyama J, Li X, Miyazato I, Taniike T, Takahashi K. Machine Learning-Aided Catalyst Modification in Oxidative Coupling of Methane via Manganese Promoter. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.1c05079] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shun Nishimura
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi 923-1292, Japan
| | - Junya Ohyama
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan
| | - Xinyue Li
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi 923-1292, Japan
| | - Itsuki Miyazato
- Department of Chemistry, Hokkaido University, N-10 W-8, Sapporo 060-0810, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi 923-1292, Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University, N-10 W-8, Sapporo 060-0810, Japan
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15
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Kinetic Modeling of Ethene Oligomerization on Bifunctional Nickel and Acid β Zeolites. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.1c04105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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16
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Centi G, Perathoner S. Redesign chemical processes to substitute the use of fossil fuels: A viewpoint of the implications on catalysis. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.03.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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17
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Meissner MP, Woodley JM. Mass-based biocatalyst metrics to guide protein engineering and bioprocess development. Nat Catal 2022. [DOI: 10.1038/s41929-021-00728-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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18
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Mine S, Jing Y, Mukaiyama T, Takao M, Maeno Z, Shimizu KI, Takigawa I, Toyao T. Machine Learning Analysis of Literature Data on the Water Gas Shift Reaction Toward Extrapolative Prediction of Novel Catalysts. CHEM LETT 2022. [DOI: 10.1246/cl.210645] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Shinya Mine
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
| | - Yuan Jing
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
| | - Takumi Mukaiyama
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
| | - Motoshi Takao
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
| | - Zen Maeno
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
| | - Ken-ichi Shimizu
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
- Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Katsura, Kyoto 615-8520, Japan
| | - Ichigaku Takigawa
- RIKEN Center for Advanced Intelligence Project, 1-4-1 Nihonbashi, Chuo-ku, Tokyo 103-0027, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, N-21, W-10, Sapporo 001-0021, Japan
| | - Takashi Toyao
- Institute for Catalysis, Hokkaido University, N-21, W-10, 1-5, Sapporo 001-0021, Japan
- Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Katsura, Kyoto 615-8520, Japan
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19
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Steiner M, Reiher M. Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis. Top Catal 2022; 65:6-39. [PMID: 35185305 PMCID: PMC8816766 DOI: 10.1007/s11244-021-01543-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/17/2021] [Indexed: 12/11/2022]
Abstract
Autonomous computations that rely on automated reaction network elucidation algorithms may pave the way to make computational catalysis on a par with experimental research in the field. Several advantages of this approach are key to catalysis: (i) automation allows one to consider orders of magnitude more structures in a systematic and open-ended fashion than what would be accessible by manual inspection. Eventually, full resolution in terms of structural varieties and conformations as well as with respect to the type and number of potentially important elementary reaction steps (including decomposition reactions that determine turnover numbers) may be achieved. (ii) Fast electronic structure methods with uncertainty quantification warrant high efficiency and reliability in order to not only deliver results quickly, but also to allow for predictive work. (iii) A high degree of autonomy reduces the amount of manual human work, processing errors, and human bias. Although being inherently unbiased, it is still steerable with respect to specific regions of an emerging network and with respect to the addition of new reactant species. This allows for a high fidelity of the formalization of some catalytic process and for surprising in silico discoveries. In this work, we first review the state of the art in computational catalysis to embed autonomous explorations into the general field from which it draws its ingredients. We then elaborate on the specific conceptual issues that arise in the context of autonomous computational procedures, some of which we discuss at an example catalytic system. GRAPHICAL ABSTRACT SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s11244-021-01543-9.
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Affiliation(s)
- Miguel Steiner
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Markus Reiher
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
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20
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Nishimura S, Le SD, Miyazato I, Fujima J, Taniike T, Ohyama J, Takahashi K. High-Throughput Screening and Literature Data Driven Machine Learning Assisting Investigation of Multi-component La2O3-based Catalysts for Oxidative Coupling of Methane. Catal Sci Technol 2022. [DOI: 10.1039/d1cy02206g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Multi-component La2O3-based catalysts for oxidative coupling of methane (OCM) were designed based on high-throughput screening (HTS) and literature datasets with multi-output machine learning (ML) approaches including random forest regression (RFR),...
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21
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Trunschke A. Prospects and challenges for autonomous catalyst discovery viewed from an experimental perspective. Catal Sci Technol 2022. [DOI: 10.1039/d2cy00275b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Autonomous catalysis research requires elaborate integration of operando experiments into automated workflows. Suitable experimental data for analysis by artificial intelligence can be measured more readily according to standard operating procedures.
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Affiliation(s)
- Annette Trunschke
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Department of Inorganic Chemistry, Faradayweg 4-6, 14195 Berlin, Germany
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22
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Mendes PSF, Siradze S, Pirro L, Thybaut JW. Extracting kinetic information in catalysis: an automated tool for the exploration of small data. REACT CHEM ENG 2022. [DOI: 10.1039/d1re00215e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Kinetically relevant information for heterogeneously catalysed reactions is automatically extracted from small datasets by means of a newly-developed machine learning chemically-enriched tool.
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Affiliation(s)
- Pedro S. F. Mendes
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
| | - Sébastien Siradze
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
| | - Laura Pirro
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
| | - Joris W. Thybaut
- Laboratory for Chemical Technology, Department of Materials, Textiles and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
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23
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Takahashi L, Nguyen TN, Nakanowatari S, Fujiwara A, Taniike T, Takahashi K. Constructing catalyst knowledge networks from catalyst big data in oxidative coupling of methane for designing catalysts. Chem Sci 2021; 12:12546-12555. [PMID: 34703540 PMCID: PMC8494033 DOI: 10.1039/d1sc04390k] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 08/27/2021] [Indexed: 12/01/2022] Open
Abstract
Designing high performance catalysts for the oxidative coupling of methane (OCM) reaction is often hindered by inconsistent catalyst data, which often leads to difficulties in extracting information such as combinatorial effects of elements upon catalyst performance as well as difficulties in reaching yields beyond a particular threshold. In order to investigate C2 yields more systematically, high throughput experiments are conducted in an effort to mass-produce catalyst-related data in a way that provides more consistency and structure. Graph theory is applied in order to visualize underlying trends in the transformation of high-throughput data into networks, which are then used to design new catalysts that potentially result in high C2 yields during the OCM reaction. Transforming high-throughput data in this manner has resulted in a representation of catalyst data that is more intuitive to use and also has resulted in the successful design of a myriad of catalysts that elicit high C2 yields, several of which resulted in yields greater than those originally reported in the high-throughput data. Thus, transforming high-throughput catalytic data into catalyst design-friendly maps provides a new method of catalyst design that is more efficient and has a higher likelihood of resulting in high performance catalysts. Catalyst data created through high-throughput experimentation is transformed into catalyst knowledge networks, leading to a new method of catalyst design where successfully designed catalysts result in high C2 yields during the OCM reaction.![]()
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Affiliation(s)
- Lauren Takahashi
- Department of Chemistry, Hokkaido University North 10, West 8 Sapporo 060-8510 Japan
| | - Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Sunao Nakanowatari
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Aya Fujiwara
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University North 10, West 8 Sapporo 060-8510 Japan
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24
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Tsuji Y, Yoshioka Y, Hori M, Yoshizawa K. Exploring Metal Cluster Catalysts Using Swarm Intelligence: Start with Hydrogen Adsorption. Top Catal 2021. [DOI: 10.1007/s11244-021-01512-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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25
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Takahashi K, Fujima J, Miyazato I, Nakanowatari S, Fujiwara A, Nguyen TN, Taniike T, Takahashi L. Catalysis Gene Expression Profiling: Sequencing and Designing Catalysts. J Phys Chem Lett 2021; 12:7335-7341. [PMID: 34327995 DOI: 10.1021/acs.jpclett.1c02111] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Identification of catalysts is a difficult matter as catalytic activities involve a vast number of complex features that each catalyst possesses. Here, catalysis gene expression profiling is proposed from unique features discovered in catalyst data collected by high-throughput experiments as an alternative way of representing the catalysts. Combining constructed catalyst gene sequences with hierarchical clustering results in catalyst gene expression profiling where natural language processing is used to identify similar catalysts based on edit distance. In addition, catalysts with similar properties are designed by modifying catalyst genes where the designed catalysts are experimentally confirmed to have catalytic activities that are associated with their catalyst gene sequences. Thus, the proposed method of catalyst gene expressions allows for a novel way of describing catalysts that allows for similarities in catalysts and catalytic activity to be easily recognized while enabling the ability to design new catalysts based on manipulating chemical elements of catalysts with similar catalyst gene sequences.
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Affiliation(s)
- Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Jun Fujima
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Itsuki Miyazato
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Sunao Nakanowatari
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Aya Fujiwara
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
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26
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Ishioka S, Miyazato I, Takahashi L, Nguyen TN, Taniike T, Takahashi K. Unveiling gas-phase oxidative coupling of methane via data analysis. J Comput Chem 2021; 42:1447-1451. [PMID: 34018210 DOI: 10.1002/jcc.26554] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 04/20/2021] [Accepted: 04/26/2021] [Indexed: 01/04/2023]
Abstract
Unveiling the details of the mechanisms of a chemical reaction is a difficult task as reaction mechanisms are strongly coupled with reaction conditions. Here, catalysts informatics combined with high-throughput experimental data is implemented to understand the oxidative coupling of methane (OCM) reaction. In particular, pairwise correlation and data visualization are performed to reveal the relation between reaction conditions and selectivity/conversion. In addition, machine learning is used to fill the gap between experimental data points; thus, a more detailed understanding of the OCM reaction against reaction conditions can be achieved. Therefore, catalysts informatics is proposed for understanding the details of the reaction mechanism, thereby aiding reaction design.
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Affiliation(s)
- Sora Ishioka
- Department of Chemistry, Hokkaido University, Sapporo, Japan
| | - Itsuki Miyazato
- Department of Chemistry, Hokkaido University, Sapporo, Japan
| | | | - Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, Japan
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27
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Zhang H, Barnard AS. Impact of atomistic or crystallographic descriptors for classification of gold nanoparticles. NANOSCALE 2021; 13:11887-11898. [PMID: 34190263 DOI: 10.1039/d1nr02258j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Machine learning models are known to be sensitive to the features used to train them, but there is currently no way to predict the impact of using different features prior to feature extraction. This is particularly important to fields such as nanotechnology that are highly multi-disciplinary, and samples can be characterised many different ways depending on the preferences of individual researchers. Does it matter if nanomaterials are described using the interatomic coordinations or more complex order parameters? In this study we compare results of supervised and unsupervised learning on a single set of gold nanoparticles that has been characterised by two different descriptors, each with a unique feature space. We find that there are some consistencies, and model selection is descriptor-agnostic, but the level of detail and the type of information that can be extracted from the results is sensitive to the way the particles are described. Unsupervised clustering revealed that an atomistic descriptor provides a finer-grained interpretation and clusters that are sub-clusters of a more sophisticated crystallographic descriptor, which is consistent with both how the features were calculated, and how they are interpreted in the domain. A supervised classifier revealed that the types of features responsible for the separation are related to the bulk structure, regardless of the descriptor, but capture different types of information. For both the atomistic and crystallographic descriptor the gradient boosting decision tree classifier gave superior results of F1-scores of 0.96 and 0.98, respectively, with excellent precision and recall, even though the clustering presented a challenging multi-classification problem.
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Affiliation(s)
- Haonan Zhang
- School of Computing, Australian National University, Acton 2601, Australia.
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28
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29
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Mine S, Takao M, Yamaguchi T, Toyao T, Maeno Z, Hakim Siddiki SMA, Takakusagi S, Shimizu K, Takigawa I. Analysis of Updated Literature Data up to 2019 on the Oxidative Coupling of Methane Using an Extrapolative Machine‐Learning Method to Identify Novel Catalysts. ChemCatChem 2021. [DOI: 10.1002/cctc.202100495] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Shinya Mine
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
| | - Motoshi Takao
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
| | - Taichi Yamaguchi
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
| | - Takashi Toyao
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
- Elements Strategy Initiative for Catalysis and Batteries Kyoto University, Katsura Kyoto 615-8520 Japan
| | - Zen Maeno
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
| | | | - Satoru Takakusagi
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
| | - Ken‐ichi Shimizu
- Institute for Catalysis Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
- Elements Strategy Initiative for Catalysis and Batteries Kyoto University, Katsura Kyoto 615-8520 Japan
| | - Ichigaku Takigawa
- RIKEN Center for Advanced Intelligence Project 1-4-1 Nihonbashi Chuo-ku Tokyo 103-0027 Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD) Hokkaido University N-21, W-10 Sapporo 001-0021 Japan
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30
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Lach D, Zhdan U, Smolinski A, Polanski J. Functional and Material Properties in Nanocatalyst Design: A Data Handling and Sharing Problem. Int J Mol Sci 2021; 22:ijms22105176. [PMID: 34068386 PMCID: PMC8153597 DOI: 10.3390/ijms22105176] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Revised: 05/06/2021] [Accepted: 05/11/2021] [Indexed: 11/16/2022] Open
Abstract
(1) Background: Properties and descriptors are two forms of molecular in silico representations. Properties can be further divided into functional, e.g., catalyst or drug activity, and material, e.g., X-ray crystal data. Millions of real measured functional property records are available for drugs or drug candidates in online databases. In contrast, there is not a single database that registers a real conversion, TON or TOF data for catalysts. All of the data are molecular descriptors or material properties, which are mainly of a calculation origin. (2) Results: Here, we explain the reason for this. We reviewed the data handling and sharing problems in the design and discovery of catalyst candidates particularly, material informatics and catalyst design, structural coding, data collection and validation, infrastructure for catalyst design and the online databases for catalyst design. (3) Conclusions: Material design requires a property prediction step. This can only be achieved based on the registered real property measurement. In reality, in catalyst design and discovery, we can observe either a severe functional property deficit or even property famine.
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Affiliation(s)
- Daniel Lach
- Institute of Chemistry, Faculty of Science and Technology, University of Silesia, Szkolna 9, 40-006 Katowice, Poland; (D.L.); (U.Z.)
| | - Uladzislau Zhdan
- Institute of Chemistry, Faculty of Science and Technology, University of Silesia, Szkolna 9, 40-006 Katowice, Poland; (D.L.); (U.Z.)
| | - Adam Smolinski
- Central Mining Institute, Plac Gwarkow 1, 40-166 Katowice, Poland;
| | - Jaroslaw Polanski
- Institute of Chemistry, Faculty of Science and Technology, University of Silesia, Szkolna 9, 40-006 Katowice, Poland; (D.L.); (U.Z.)
- Correspondence: ; Tel.: +48-32-259-9978
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31
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Ting KW, Kamakura H, Poly SS, Takao M, Siddiki SMAH, Maeno Z, Matsushita K, Shimizu KI, Toyao T. Catalytic Methylation of m-Xylene, Toluene, and Benzene Using CO2 and H2 over TiO2-Supported Re and Zeolite Catalysts: Machine-Learning-Assisted Catalyst Optimization. ACS Catal 2021. [DOI: 10.1021/acscatal.0c05661] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Kah Wei Ting
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - Haruka Kamakura
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - Sharmin S. Poly
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - Motoshi Takao
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - S. M. A. Hakim Siddiki
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - Zen Maeno
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
| | - Koichi Matsushita
- Central Technical Research Laboratory, ENEOS Corporation, Yokohama, Kanagawa 231-0815, Japan
| | - Ken-ichi Shimizu
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
- Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Katsura, Kyoto 615-8520, Japan
| | - Takashi Toyao
- Institute for Catalysis, Hokkaido University, N-21, W-10, Sapporo, Hokkaido 001-0021, Japan
- Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Katsura, Kyoto 615-8520, Japan
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32
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Wulf C, Beller M, Boenisch T, Deutschmann O, Hanf S, Kockmann N, Kraehnert R, Oezaslan M, Palkovits S, Schimmler S, Schunk SA, Wagemann K, Linke D. A Unified Research Data Infrastructure for Catalysis Research – Challenges and Concepts. ChemCatChem 2021. [DOI: 10.1002/cctc.202001974] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Christoph Wulf
- Leibniz-Institute for Catalysis Rostock Albert-Einstein-Str. 29a D-18059 Rostock Germany
| | - Matthias Beller
- Leibniz-Institute for Catalysis Rostock Albert-Einstein-Str. 29a D-18059 Rostock Germany
| | - Thomas Boenisch
- High Performance Computing Center Stuttgart (HLRS) University of Stuttgart Nobelstr. 19 D-70569 Stuttgart Germany
| | - Olaf Deutschmann
- Karlsruher Institut für Technologie (KIT) Kaiserstraße 12 D-76131 Karlsruhe Germany
| | - Schirin Hanf
- Karlsruher Institut für Technologie (KIT) Engesserstr. 15 D-76131 Karlsruhe Germany
| | - Norbert Kockmann
- Biochemical and Chemical Engineering, Equipment Design TU Dortmund University D-44221 Dortmund Germany
| | - Ralph Kraehnert
- BasCat – UniCat BASF JointLab Technische Universität Berlin Hardenbergstraße 36 D-10623 Berlin Germany
| | - Mehtap Oezaslan
- Institute of Technical Chemistry TU Braunschweig D-38106 Braunschweig Germany
| | - Stefan Palkovits
- Institute for Technical and Macromolecular Chemistry RWTH Aachen University Worringerweg 2 D-52074 Aachen Germany
| | - Sonja Schimmler
- Fraunhofer Institute for Open Communication Systems (FOKUS) Kaiserin-Augusta-Allee 31 D-10589 Berlin Germany
| | - Stephan A. Schunk
- the high throughput experimentation company Kurpfalzring 104 D-69123 Heidelberg Germany
- BASF SE Carl-Bosch Str. 38 D-67056 Ludwigshafen Germany
| | - Kurt Wagemann
- DECHEMA e.V. Theodor-Heuss-Allee 25 D-60486 Frankfurt Germany
| | - David Linke
- Leibniz-Institute for Catalysis Rostock Albert-Einstein-Str. 29a D-18059 Rostock Germany
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33
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Wang M, Zhu H. Machine Learning for Transition-Metal-Based Hydrogen Generation Electrocatalysts. ACS Catal 2021. [DOI: 10.1021/acscatal.1c00178] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Min Wang
- State Key Lab of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Hongwei Zhu
- State Key Lab of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
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34
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Parker AJ, Motevalli B, Opletal G, Barnard AS. The pure and representative types of disordered platinum nanoparticles from machine learning. NANOTECHNOLOGY 2021; 32:095404. [PMID: 33212430 DOI: 10.1088/1361-6528/abcc23] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The development of interpretable structure/property relationships is a cornerstone of nanoscience, but can be challenging when the structural diversity and complexity exceeds our ability to characterise it. This is often the case for imperfect, disordered and amorphous nanoparticles, where even the nomenclature can be unspecific. Disordered platinum nanoparticles have exhibited superior performance for some reactions, which makes a systematic way of describing them highly desirable. In this study we have used a diverse set of disorder platinum nanoparticles and machine learning to identify the pure and representative structures based on their similarity in 121 dimensions. We identify two prototypes that are representative of separable classes, and seven archetypes that are the pure structures on the convex hull with which all other possibilities can be described. Together these nine nanoparticles can explain all of the variance in the set, and can be described as either single crystal, twinned, spherical or branched; with or without roughened surfaces. This forms a robust sub-set of platinum nanoparticle upon which to base further work, and provides a theoretical basis for discussing structure/property relationships of platinum nanoparticles that are not geometrically ideal.
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Affiliation(s)
| | | | | | - Amanda S Barnard
- ANU Research School of Computer Science, Acton ACT 2601, Australia
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35
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36
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Ohyama J, Hirayama A, Kondou N, Yoshida H, Machida M, Nishimura S, Hirai K, Miyazato I, Takahashi K. Data science assisted investigation of catalytically active copper hydrate in zeolites for direct oxidation of methane to methanol using H 2O 2. Sci Rep 2021; 11:2067. [PMID: 33483547 PMCID: PMC7822835 DOI: 10.1038/s41598-021-81403-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Accepted: 01/06/2021] [Indexed: 11/25/2022] Open
Abstract
Dozens of Cu zeolites with MOR, FAU, BEA, FER, CHA and MFI frameworks are tested for direct oxidation of CH4 to CH3OH using H2O2 as oxidant. To investigate the active structures of the Cu zeolites, 15 structural variables, which describe the features of the zeolite framework and reflect the composition, the surface area and the local structure of the Cu zeolite active site, are collected from the Database of Zeolite Structures of the International Zeolite Association (IZA). Also analytical studies based on inductively coupled plasma-optical emission spectrometry (ICP-OES), X-ray fluorescence (XRF), N2 adsorption specific surface area measurement and X-ray absorption fine structure (XAFS) spectral measurement are performed. The relationships between catalytic activity and the structural variables are subsequently revealed by data science techniques, specifically, classification using unsupervised and supervised machine learning and data visualization using pairwise correlation. Based on the unveiled relationships and a detailed analysis of the XAFS spectra, the local structures of the Cu zeolites with high activity are proposed.
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Affiliation(s)
- Junya Ohyama
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, 860-8555, Japan.
| | - Airi Hirayama
- Department of Applied Chemistry and Biochemistry, Graduate School of Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, 860-8555, Japan
| | - Nahoko Kondou
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, 860-8555, Japan
| | - Hiroshi Yoshida
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, 860-8555, Japan
| | - Masato Machida
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, 860-8555, Japan
| | - Shun Nishimura
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, 923-1292, Japan
| | - Kenji Hirai
- Research Institute for Electronic Science, Hokkaido University, N20W10, Kita-Ward, Sapporo, 001-0020, Japan
| | - Itsuki Miyazato
- Department of Chemistry, Hokkaido University, N-15 W-8, Sapporo, 060-0815, Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University, N-15 W-8, Sapporo, 060-0815, Japan
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37
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Nguyen TN, Nakanowatari S, Nhat Tran TP, Thakur A, Takahashi L, Takahashi K, Taniike T. Learning Catalyst Design Based on Bias-Free Data Set for Oxidative Coupling of Methane. ACS Catal 2021. [DOI: 10.1021/acscatal.0c04629] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Sunao Nakanowatari
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Thuy Phuong Nhat Tran
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Ashutosh Thakur
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
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38
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Miyazato I, Nguyen TN, Takahashi L, Taniike T, Takahashi K. Representing Catalytic and Processing Space in Methane Oxidation Reaction via Multioutput Machine Learning. J Phys Chem Lett 2021; 12:808-814. [PMID: 33415983 DOI: 10.1021/acs.jpclett.0c03465] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Multioutput support vector regression (SVR) is implemented to simultaneously predict the selectivities and the CH4 conversion against experimental conditions in methane oxidation catalysts. The predictions unveil the details of how each selectivity and CH4 conversion behaves in each catalyst. In particular, the selectivity and the CH4 conversion of Mn-Na2WO4/SiO2, Ti-Na2WO4/SiO2, Pd-Na2WO4/SiO2, and Na2WO 4/SiO2 are predicted, and the effects of Mn, Ti, and Pd are unveiled. In addition, the trade-off points of CO and C2H6 are identified for each catalyst, leading to maximization of the C2H6 yield. Thus the simultaneous prediction of the reaction trend with catalysts not only will help with the understanding of the catalyst activities but also will provide guidance for designing the experimental conditions.
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Affiliation(s)
- Itsuki Miyazato
- Faculty of Science, Department of Chemistry, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Thanh Nhat Nguyen
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Lauren Takahashi
- Faculty of Science, Department of Chemistry, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Toshiaki Taniike
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Keisuke Takahashi
- Faculty of Science, Department of Chemistry, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo 060-0810, Japan
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39
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Takahashi L, Ohyama J, Nishimura S, Takahashi K. Representing the Methane Oxidation Reaction via Linking First-Principles Calculations and Experiment with Graph Theory. J Phys Chem Lett 2021; 12:558-568. [PMID: 33378212 DOI: 10.1021/acs.jpclett.0c03347] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Representing the chemical reaction is a challenging matter faced in chemistry due to the complex molecular interactions and difficulties faced when determining intermediate reactions that may occur throughout the reaction. Graph theory and network analysis are used with first-principles calculations and experiments to investigate possible intermediate reactions that may occur during a reaction; in this case, catalyst-free methane oxidation is chosen as the prototype reaction. Network analysis is used to help illuminate several key intermediate compounds that potentially appear throughout the course of the prototype reaction and the detailed mechanisms of methane oxidation while showing good agreement with experimental data. Presenting the chemical reaction as a network, therefore, makes it possible to link experimental and computational data in a space that accounts for the impact of intermediate reactions upon the outcome of the overall reaction, thereby making network analysis an alternative method for representing chemical reactions.
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Affiliation(s)
- Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Junya Ohyama
- Faculty of Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan
| | - Shun Nishimura
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi 923-1292, Japan
| | - Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
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40
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Ohyama J, Kinoshita T, Funada E, Yoshida H, Machida M, Nishimura S, Uno T, Fujima J, Miyazato I, Takahashi L, Takahashi K. Direct design of active catalysts for low temperature oxidative coupling of methane via machine learning and data mining. Catal Sci Technol 2021. [DOI: 10.1039/d0cy01751e] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Direct design of low temperature oxidative coupling of methane catalysts is proposed via machine learning and data mining.
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Affiliation(s)
- Junya Ohyama
- Faculty of Advanced Science and Technology
- Kumamoto University
- Kumamoto
- 860-8555 Japan
| | - Takaaki Kinoshita
- Graduate School of Science and Technology
- Kumamoto University
- Kumamoto
- Japan
| | - Eri Funada
- Graduate School of Science and Technology
- Kumamoto University
- Kumamoto
- Japan
| | - Hiroshi Yoshida
- Faculty of Advanced Science and Technology
- Kumamoto University
- Kumamoto
- 860-8555 Japan
| | - Masato Machida
- Faculty of Advanced Science and Technology
- Kumamoto University
- Kumamoto
- 860-8555 Japan
| | - Shun Nishimura
- Graduate School of Advanced Science and Technology
- Japan Advanced Institute of Science and Technology (JAIST)
- Nomi
- 923-1292 Japan
| | - Takeaki Uno
- National Institute of Informatics (NII)
- Chiyoda-ku
- 101-8430 Japan
| | - Jun Fujima
- Department of Chemistry
- Hokkaido University
- Sapporo 060-0815
- Japan
| | - Itsuki Miyazato
- Department of Chemistry
- Hokkaido University
- Sapporo 060-0815
- Japan
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41
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Sugiyama K, Nguyen TN, Nakanowatari S, Miyazato I, Taniike T, Takahashi K. Direct Design of Catalysts in Oxidative Coupling of Methane via High‐Throughput Experiment and Deep Learning. ChemCatChem 2020. [DOI: 10.1002/cctc.202001680] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Kanami Sugiyama
- Graduate School of Chemical Sciences and Engineering Hokkaido University, Kita 13, Nishi 8 Sapporo 060-8628 Japan
| | - Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Sunao Nakanowatari
- Graduate School of Advanced Science and Technology Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Itsuki Miyazato
- Department of Chemistry Hokkaido University North 10, West 8 Sapporo 060-8510 Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology Japan Advanced Institute of Science and Technology 1-1 Asahidai Nomi Ishikawa 923-1292 Japan
| | - Keisuke Takahashi
- Department of Chemistry Hokkaido University North 10, West 8 Sapporo 060-8510 Japan
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42
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Mendes PSF, Siradze S, Pirro L, Thybaut JW. Open Data in Catalysis: From Today's Big Picture to the Future of Small Data. ChemCatChem 2020. [DOI: 10.1002/cctc.202001132] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Pedro S. F. Mendes
- Laboratory for Chemical Technology Department of Materials Textiles and Chemical Engineering Ghent University Technologiepark 125 9052 Ghent Belgium
| | - Sébastien Siradze
- Laboratory for Chemical Technology Department of Materials Textiles and Chemical Engineering Ghent University Technologiepark 125 9052 Ghent Belgium
| | - Laura Pirro
- Laboratory for Chemical Technology Department of Materials Textiles and Chemical Engineering Ghent University Technologiepark 125 9052 Ghent Belgium
| | - Joris W. Thybaut
- Laboratory for Chemical Technology Department of Materials Textiles and Chemical Engineering Ghent University Technologiepark 125 9052 Ghent Belgium
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43
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Abstract
AbstractThe “Seven Pillars” of oxidation catalysis proposed by Robert K. Grasselli represent an early example of phenomenological descriptors in the field of heterogeneous catalysis. Major advances in the theoretical description of catalytic reactions have been achieved in recent years and new catalysts are predicted today by using computational methods. To tackle the immense complexity of high-performance systems in reactions where selectivity is a major issue, analysis of scientific data by artificial intelligence and data science provides new opportunities for achieving improved understanding. Modern data analytics require data of highest quality and sufficient diversity. Existing data, however, frequently do not comply with these constraints. Therefore, new concepts of data generation and management are needed. Herein we present a basic approach in defining best practice procedures of measuring consistent data sets in heterogeneous catalysis using “handbooks”. Selective oxidation of short-chain alkanes over mixed metal oxide catalysts was selected as an example.
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44
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Akhade SA, Singh N, Gutiérrez OY, Lopez-Ruiz J, Wang H, Holladay JD, Liu Y, Karkamkar A, Weber RS, Padmaperuma AB, Lee MS, Whyatt GA, Elliott M, Holladay JE, Male JL, Lercher JA, Rousseau R, Glezakou VA. Electrocatalytic Hydrogenation of Biomass-Derived Organics: A Review. Chem Rev 2020; 120:11370-11419. [PMID: 32941005 DOI: 10.1021/acs.chemrev.0c00158] [Citation(s) in RCA: 113] [Impact Index Per Article: 28.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Sustainable energy generation calls for a shift away from centralized, high-temperature, energy-intensive processes to decentralized, low-temperature conversions that can be powered by electricity produced from renewable sources. Electrocatalytic conversion of biomass-derived feedstocks would allow carbon recycling of distributed, energy-poor resources in the absence of sinks and sources of high-grade heat. Selective, efficient electrocatalysts that operate at low temperatures are needed for electrocatalytic hydrogenation (ECH) to upgrade the feedstocks. For effective generation of energy-dense chemicals and fuels, two design criteria must be met: (i) a high H:C ratio via ECH to allow for high-quality fuels and blends and (ii) a lower O:C ratio in the target molecules via electrochemical decarboxylation/deoxygenation to improve the stability of fuels and chemicals. The goal of this review is to determine whether the following questions have been sufficiently answered in the open literature, and if not, what additional information is required:(1)What organic functionalities are accessible for electrocatalytic hydrogenation under a set of reaction conditions? How do substitutions and functionalities impact the activity and selectivity of ECH?(2)What material properties cause an electrocatalyst to be active for ECH? Can general trends in ECH be formulated based on the type of electrocatalyst?(3)What are the impacts of reaction conditions (electrolyte concentration, pH, operating potential) and reactor types?
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Affiliation(s)
- Sneha A Akhade
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.,Materials Sciences Division, Lawrence Livermore National Laboratory, Livermore, California 94550, United States
| | - Nirala Singh
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.,Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109-2136, United States
| | - Oliver Y Gutiérrez
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Juan Lopez-Ruiz
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Huamin Wang
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jamie D Holladay
- TU München, Department of Chemistry and Catalysis Research Center, Lichtenbergstrasse 4, D-84747 Garching, Germany
| | - Yue Liu
- TU München, Department of Chemistry and Catalysis Research Center, Lichtenbergstrasse 4, D-84747 Garching, Germany
| | - Abhijeet Karkamkar
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Robert S Weber
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Asanga B Padmaperuma
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Mal-Soon Lee
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Greg A Whyatt
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Michael Elliott
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Johnathan E Holladay
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jonathan L Male
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Johannes A Lercher
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.,TU München, Department of Chemistry and Catalysis Research Center, Lichtenbergstrasse 4, D-84747 Garching, Germany
| | - Roger Rousseau
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Vassiliki-Alexandra Glezakou
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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45
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Nishimura S, Ohyama J, Kinoshita T, Dinh Le S, Takahashi K. Revisiting Machine Learning Predictions for Oxidative Coupling of Methane (OCM) based on Literature Data. ChemCatChem 2020. [DOI: 10.1002/cctc.202001032] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Shun Nishimura
- Graduate School of Advanced Science and Technology Japan Advanced Institute of Science and Technology Nomi Ishikawa 923-1292 Japan
| | - Junya Ohyama
- Faculty of Advanced Science and Technology Kumamoto University Kumamoto 860-8555 Japan
| | - Takaaki Kinoshita
- Graduate School of Science and Technology Kumamoto University Kumamoto 860-8555 Japan
| | - Son Dinh Le
- Graduate School of Advanced Science and Technology Japan Advanced Institute of Science and Technology Nomi Ishikawa 923-1292 Japan
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46
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Wada T, Funako T, Chammingkwan P, Thakur A, Matta A, Terano M, Taniike T. Structure-performance relationship of Mg(OEt)2-based Ziegler-Natta catalysts. J Catal 2020. [DOI: 10.1016/j.jcat.2020.06.030] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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47
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Takahashi K, Takahashi L, Nguyen TN, Thakur A, Taniike T. Multidimensional Classification of Catalysts in Oxidative Coupling of Methane through Machine Learning and High-Throughput Data. J Phys Chem Lett 2020; 11:6819-6826. [PMID: 32787213 DOI: 10.1021/acs.jpclett.0c01926] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Understanding the unique features of catalysts is a complex matter as it requires quantitative analysis with a relatively large selection of catalyst data. Here, unique features of each catalyst within the oxidative methane of coupling (OCM) reaction are investigated by combining data science and high throughput experimental data. Visualization of high-throughput OCM data reveals that there are several groups of catalysts based on their response against experimental conditions. Unsupervised machine learning, in particular, the Gaussian mixture model, classifies the OCM catalysts into six groups based on similarity in catalytic activities. Data visualization and parallel coordinates unveil the unique catalytic features of each classified group. Each classified group is statistically analyzed where unique features of each group are defined in term of C2 selectivity, CH4 conversion, and their composition in each calssified group. Thus, systematic design of catalysts can be achieved in principle on the basis of the unique features of catalysts uncovered via data science.
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Affiliation(s)
- Keisuke Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Lauren Takahashi
- Department of Chemistry, Hokkaido University, North 10, West 8, Sapporo 060-8510, Japan
| | - Thanh Nhat Nguyen
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Ashutosh Thakur
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Toshiaki Taniike
- Graduate School of Advanced Science and Technology, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
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48
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Erdem Günay M, Yıldırım R. Recent advances in knowledge discovery for heterogeneous catalysis using machine learning. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2020. [DOI: 10.1080/01614940.2020.1770402] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- M. Erdem Günay
- Department of Energy Systems Engineering, Istanbul Bilgi University, Istanbul, Turkey
| | - Ramazan Yıldırım
- Department of Chemical Engineering, Boğaziçi University, Istanbul, Turkey
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49
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Affiliation(s)
- Stefan Palkovits
- RWTH Aachen University Institute for Technical and Macromolecular Chemistry Worringerweg 2 52074 Aachen Germany
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Fujima J, Tanaka Y, Miyazato I, Takahashi L, Takahashi K. Catalyst Acquisition by Data Science (CADS): a web-based catalyst informatics platform for discovering catalysts. REACT CHEM ENG 2020. [DOI: 10.1039/d0re00098a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
An innovative web-based integrated catalyst informatics platform, Catalyst Acquisition by Data Science (CADS), is developed for use towards the discovery and design of catalysts.
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Affiliation(s)
- Jun Fujima
- Center for Materials research by Information Integration (CMI2)
- National Institute for Materials Science (NIMS)
- Tsukuba
- Japan
- Department of Chemistry
| | - Yuzuru Tanaka
- Center for Materials research by Information Integration (CMI2)
- National Institute for Materials Science (NIMS)
- Tsukuba
- Japan
| | - Itsuki Miyazato
- Center for Materials research by Information Integration (CMI2)
- National Institute for Materials Science (NIMS)
- Tsukuba
- Japan
- Department of Chemistry
| | - Lauren Takahashi
- Center for Materials research by Information Integration (CMI2)
- National Institute for Materials Science (NIMS)
- Tsukuba
- Japan
- Department of Chemistry
| | - Keisuke Takahashi
- Center for Materials research by Information Integration (CMI2)
- National Institute for Materials Science (NIMS)
- Tsukuba
- Japan
- Department of Chemistry
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