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Schreiber M, Schembecker G. Development of an Automated Adsorbent Selection Strategy for Liquid–Phase Adsorption. Chem Eng Technol 2022. [DOI: 10.1002/ceat.202200152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Mareike Schreiber
- TU Dortmund University Department of Biochemical and Chemical Engineering Laboratory of Plant and Process Design Emil-Figge-Str. 70 44227 Dortmund Germany
| | - Gerhard Schembecker
- TU Dortmund University Department of Biochemical and Chemical Engineering Laboratory of Plant and Process Design Emil-Figge-Str. 70 44227 Dortmund Germany
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Bahr MN, Nandkeolyar A, Kenna JK, Nevins N, Da Vià L, Işık M, Chodera JD, Mobley DL. Automated high throughput pK a and distribution coefficient measurements of pharmaceutical compounds for the SAMPL8 blind prediction challenge. J Comput Aided Mol Des 2021; 35:1141-1155. [PMID: 34714468 DOI: 10.1007/s10822-021-00427-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 10/13/2021] [Indexed: 11/28/2022]
Abstract
The goal of the Statistical Assessment of the Modeling of Proteins and Ligands (SAMPL) challenge is to improve the accuracy of current computational models to estimate free energy of binding, deprotonation, distribution and other associated physical properties that are useful for the design of new pharmaceutical products. New experimental datasets of physicochemical properties provide opportunities for prospective evaluation of computational prediction methods. Here, aqueous pKa and a range of bi-phasic logD values for a variety of pharmaceutical compounds were determined through a streamlined automated process to be utilized in the SAMPL8 physical property challenge. The goal of this paper is to provide an in-depth review of the experimental methods utilized to create a comprehensive data set for the blind prediction challenge. The significance of this work involves the use of high throughput experimentation equipment and instrumentation to produce acid dissociation constants for twenty-three drug molecules, as well as distribution coefficients for eleven of those molecules.
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Affiliation(s)
- Matthew N Bahr
- Pharmaceutical Research and Development, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA, 19426, USA.
| | - Aakankschit Nandkeolyar
- Pharmaceutical Research and Development, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA, 19426, USA.,Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA.,Department of Pharmaceutical Sciences and Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA
| | - John K Kenna
- Pharmaceutical Research and Development, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA, 19426, USA
| | - Neysa Nevins
- Pharmaceutical Research and Development, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA, 19426, USA
| | - Luigi Da Vià
- Pharmaceutical Research and Development, GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, UK
| | - Mehtap Işık
- Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - John D Chodera
- Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - David L Mobley
- Department of Pharmaceutical Sciences and Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA
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Schreiber M, Brunert M, Schembecker G. Extraction on a Robotic Platform – Autonomous Solvent Selection under Economic Evaluation Criteria. Chem Eng Technol 2021. [DOI: 10.1002/ceat.202100171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Mareike Schreiber
- TU Dortmund University Department of Biochemical and Chemical Engineering Laboratory of Plant and Process Design Emil-Figge-Strasse 70 44227 Dortmund Germany
| | - Manuel Brunert
- TU Dortmund University Department of Biochemical and Chemical Engineering Laboratory of Plant and Process Design Emil-Figge-Strasse 70 44227 Dortmund Germany
| | - Gerhard Schembecker
- TU Dortmund University Department of Biochemical and Chemical Engineering Laboratory of Plant and Process Design Emil-Figge-Strasse 70 44227 Dortmund Germany
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Bahr MN, Morris MA, Tu NP, Nandkeolyar A. Recent Advances in High-Throughput Automated Powder Dispensing Platforms for Pharmaceutical Applications. Org Process Res Dev 2020. [DOI: 10.1021/acs.oprd.0c00411] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Matthew N. Bahr
- GlaxoSmithKline, Pharmaceutical Research and Development, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Mark A. Morris
- Vertex Pharmaceuticals Inc., 50 Northern Avenue, Boston, Massachusetts 02210, United States
| | - Noah P. Tu
- AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Aakankschit Nandkeolyar
- GlaxoSmithKline, Pharmaceutical Research and Development, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
- Drexel University, 3141 Chestnut Street, Philadelphia, Pennsylvania 19104, United States
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Bahr MN, Damon DB, Yates SD, Chin AS, Christopher JD, Cromer S, Perrotto N, Quiroz J, Rosso V. Collaborative Evaluation of Commercially Available Automated Powder Dispensing Platforms for High-Throughput Experimentation in Pharmaceutical Applications. Org Process Res Dev 2018. [DOI: 10.1021/acs.oprd.8b00259] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Matthew N. Bahr
- GlaxoSmithKline, Pharmaceutical Research and Development, Platform Technology & Science, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - David B. Damon
- Pfizer Inc., Worldwide Research and Development, Pharmaceutical Sciences Small Molecule Chemical Research and Development, Eastern Point Road, Groton, Connecticut 06340, United States
| | - Simon D. Yates
- AstraZeneca, Pharmaceutical Technology & Development, Chemical Development, Silk Road Business Park, Macclesfield, Cheshire SK10 2NA, United Kingdom
| | - Alexander S. Chin
- Merck & Co., Inc., MRL, Preformulation, 126 East Lincoln Avenue, Rahway, New Jersey 07065, United States
| | - J. David Christopher
- Merck & Co., Inc., MRL, Research CMC Statistics, 770 Sumneytown Pike, West Point, Pennsylvania 19486, United States
| | - Samuel Cromer
- GlaxoSmithKline, Pharmaceutical Research and Development, Platform Technology & Science, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
- Drexel University, College of Engineering, 3141 Chestnut Street, Philadelphia, Pennsylvania 19104, United States
| | - Nicholas Perrotto
- Merck & Co., Inc., MRL, Process R&D, 126 East Lincoln Avenue, Rahway, New Jersey 07065, United States
| | - Jorge Quiroz
- Merck & Co., Inc., MRL, Research CMC Statistics, 2000 Galloping Hill Road, Kenilworth, New Jersey 07033, United States
| | - Victor Rosso
- Bristol-Myers Squibb, Global Product Development & Supply, Chemical & Synthetic Development, One Squibb Drive, New Brunswick, New Jersey 08903, United States
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