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Cooper VR, Krogel JT, Donald KJ. From Molecules to Solids: A vdW-DF-C09 Case Study of the Mercury Dihalides. J Phys Chem A 2021; 125:3978-3985. [PMID: 33724850 DOI: 10.1021/acs.jpca.0c10847] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The mercury dihalides show a remarkable diversity in the structural preferences in their minimum energy structure types, spanning molecular to strongly bound ionic solids. A challenge in the development of density functional methods for extended systems is to arrive at strategies that serve equally well such a broad range of bonding modes or structural preferences. The chemical bonding and the stabilities of mercury dihalides and the general utility and reliability of the van der Waals density functional with C09 exchange (vdW-DF-C09) in predicting or describing the energetics and structural preferences in these metal dihalides is examined. We show that, in contrast with the uncorrected generalized gradient approximation of the Perdew-Burke-Erzenhoff (PBE) exchange-correlation functional, qualitative and quantitative patterns in the bonding of the mercury dihalide solids are well reproduced with vdW-DF-C09 for the full series of HgX2 systems for X = F, Cl, Br, and I. The possible existence of a low-temperature cotunnite polymorph for HgF2 and PbF2 is posited.
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Affiliation(s)
- Valentino R Cooper
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Jaron T Krogel
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Kelling J Donald
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
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Affiliation(s)
- Supreeth Prasad
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, 28 Westhampton Way, Richmond, Virginia 23173, United States
| | - Bernard K. Wittmaack
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, 28 Westhampton Way, Richmond, Virginia 23173, United States
| | - Kelling J. Donald
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, 28 Westhampton Way, Richmond, Virginia 23173, United States
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Koby RF, Hanusa TP. Dispersion and distortion in heavy group 2 and lanthanide decamethylmetallocenes: The (C5Me5)2(Sr,Sm) connection. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2017.11.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Vasiliu M, Hill JG, Peterson KA, Dixon DA. Structures and Heats of Formation of Simple Alkaline Earth Metal Compounds II: Fluorides, Chlorides, Oxides, and Hydroxides for Ba, Sr, and Ra. J Phys Chem A 2018; 122:316-327. [DOI: 10.1021/acs.jpca.7b09056] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Monica Vasiliu
- Department
of Chemistry, The University of Alabama, Shelby Hall, Box 870336, Tuscaloosa, Alabama 35487-0336, United States
| | - J. Grant Hill
- Department
of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Kirk A. Peterson
- Department
of Chemistry, Washington State University, Pullman, Washington 99164-4630, United States
| | - David A. Dixon
- Department
of Chemistry, The University of Alabama, Shelby Hall, Box 870336, Tuscaloosa, Alabama 35487-0336, United States
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Faucher A, Terskikh VV, Ye E, Bernard GM, Wasylishen RE. Solid-State 87Sr NMR Spectroscopy at Natural Abundance and High Magnetic Field Strength. J Phys Chem A 2015; 119:11847-61. [DOI: 10.1021/acs.jpca.5b09392] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexandra Faucher
- Department
of Chemistry, Gunning-Lemieux Chemistry Centre, University of Alberta, Edmonton, AB, Canada T6G 2G2
| | - Victor V. Terskikh
- Department
of Chemistry, University of Ottawa, Ottawa, ON, Canada K1N 6N5
| | - Eric Ye
- Department
of Chemistry, University of Ottawa, Ottawa, ON, Canada K1N 6N5
| | - Guy M. Bernard
- Department
of Chemistry, Gunning-Lemieux Chemistry Centre, University of Alberta, Edmonton, AB, Canada T6G 2G2
| | - Roderick E. Wasylishen
- Department
of Chemistry, Gunning-Lemieux Chemistry Centre, University of Alberta, Edmonton, AB, Canada T6G 2G2
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Ischenko AA. Effect of vibronic interactions on molecular structures determined by gas electron diffraction. Struct Chem 2015. [DOI: 10.1007/s11224-015-0667-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Structure, bonding, relativistic effects, and dispersion in the group 12 dihalide (MX2)3 clusters, with lessons from the extended solids. Struct Chem 2015. [DOI: 10.1007/s11224-015-0598-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Pogrebnoi AM, Pogrebnaya TP, Kudin LS, Tuyizere S. Structure and thermodynamic properties of positive and negative cluster ions in saturated vapour over barium dichloride. Mol Phys 2013. [DOI: 10.1080/00268976.2013.776711] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Bersuker IB. Pseudo-Jahn–Teller Effect—A Two-State Paradigm in Formation, Deformation, and Transformation of Molecular Systems and Solids. Chem Rev 2013; 113:1351-90. [DOI: 10.1021/cr300279n] [Citation(s) in RCA: 353] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Isaac B. Bersuker
- Institute for Theoretical Chemistry, Department of Chemistry & Biochemistry, The University of Texas at Austin, Austin, Texas 78712, United States
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Varga Z, Groen CP, Kolonits M, Hargittai M. Curious matrix effects: a computational, electron diffraction, and vibrational spectroscopic study of dysprosium triiodide. Dalton Trans 2010; 39:6221-30. [DOI: 10.1039/c001182g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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13
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Interplay of thermochemistry and Structural Chemistry, the journal (volume 17, 2006) and the discipline. Struct Chem 2009. [DOI: 10.1007/s11224-009-9506-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Groen CP, Varga Z, Kolonits M, Peterson KA, Hargittai M. Does the 4f Electron Configuration Affect Molecular Geometries? A Joint Computational, Vibrational Spectroscopic, and Electron Diffraction Study of Dysprosium Tribromide. Inorg Chem 2009; 48:4143-53. [DOI: 10.1021/ic802340g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Cornelis Petrus Groen
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, 1521 Budapest, Hungary, and Department of Chemistry, Washington State University, Pullman, Washington 99164
| | - Zoltán Varga
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, 1521 Budapest, Hungary, and Department of Chemistry, Washington State University, Pullman, Washington 99164
| | - Mária Kolonits
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, 1521 Budapest, Hungary, and Department of Chemistry, Washington State University, Pullman, Washington 99164
| | - Kirk A. Peterson
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, 1521 Budapest, Hungary, and Department of Chemistry, Washington State University, Pullman, Washington 99164
| | - Magdolna Hargittai
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, 1521 Budapest, Hungary, and Department of Chemistry, Washington State University, Pullman, Washington 99164
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Abstract
Metal halides are a relatively large class of inorganic compounds that participate in many industrial processes, from halogen metallurgy to the production of semiconductors. Because most metal halides are ionic crystals at ambient conditions, the term "molecular metal halides" usually refers to vapor-phase species. These gas-phase molecules have a special place in basic research because they exhibit the widest range of chemical bonding from the purely ionic to mostly covalent bonding through to weakly interacting systems. Although our focus is basic research, knowledge of the structural and thermodynamic properties of gas-phase metal halides is also important in industrial processes. In this Account, we review our most recent work on metal halide molecular structures. Our studies are based on electron diffraction and vibrational spectroscopy, and increasingly, we have augmented our experimental work with quantum chemical computations. Using both experimental and computational techniques has enabled us to determine intriguing structural effects with better accuracy than using either technique alone. We loosely group our discussion based on structural effects including "floppiness", relativistic effects, vibronic interactions, and finally, undiscovered molecules with computational thermodynamic stability. Floppiness, or serious "nonrigidity", is a typical characteristic of metal halides and makes their study challenging for both experimentalists and theoreticians. Relativistic effects are mostly responsible for the unique structure of gold and mercury halides. These molecules have shorter-than-expected bonds and often have unusual geometrical configurations. The gold monohalide and mercury dihalide dimers and the molecular-type crystal structure of HgCl(2) are examples. We also examined spin-orbit coupling and the possible effect of the 4f electrons on the structure of lanthanide trihalides. Unexpectedly, we found that the geometry of their dimers depends on the f electron configuration. Metal halides are unique in exhibiting strong vibronic interactions such as the Jahn-Teller effect and the related Renner-Teller effect. Some metal trihalide molecules have an almost T-shape due to static Jahn-Teller distortions. The nonlinear structure with a 150 degree bond angle of the chromium dichloride molecule demonstrates the Renner-Teller effect. Finally, we present a few examples of unknown structures that appear to be thermodynamically stable, including gold and silver triiodides and all silver subhalides. The combination of experimental and computational techniques has brought new insights to the structural chemistry of metal halides. We expect that the continuing progress in computational chemistry will shed further light on the intricate details of these and other molecular structures.
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Affiliation(s)
- Magdolna Hargittai
- Materials Structure and Modeling Research Group of the Hungarian Academy of Sciences, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
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Lanza G, Minichino C. How an Inert-Gas Matrix Can Modify the Molecular Properties of Lanthanide Trifluoride. Chemphyschem 2009; 10:507-11. [DOI: 10.1002/cphc.200800643] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Donald K, Hargittai M, Hoffmann R. Group 12 Dihalides: Structural Predilections from Gases to Solids. Chemistry 2009; 15:158-77. [DOI: 10.1002/chem.200801035] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Lanza G, Varga Z, Kolonits M, Hargittai M. On the effect of 4f electrons on the structural characteristics of lanthanide trihalides: Computational and electron diffraction study of dysprosium trichloride. J Chem Phys 2008; 128:074301. [DOI: 10.1063/1.2828537] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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Garcia-Fernandez P, Bersuker IB, Boggs JE. Why Are Some ML2 Molecules (M = Ca, Sr, Ba; L = H, F, Cl, Br) Bent while Others are Linear? Implications of the Pseudo Jahn−Teller Effect. J Phys Chem A 2007; 111:10409-15. [PMID: 17665886 DOI: 10.1021/jp073207o] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The unexpected bent geometries of some alkaline earth dihalides and dihydrides, ML(2) (M = Ca, Sr, Ba; L = H, F, Cl, Br) have been explained in the literature using various models that attribute the effect to different phenomena like covalency, metal core polarization, sd-hybridization, and electron pair repulsion. We employ (based on first principles) the pseudo Jahn-Teller effect, as the only source of instability of high-symmetry configurations in nondegenerate states, to analyze the origin of the geometry of these systems and show that this approach explains all of their main structural features, including the topology of the Laplacian of the electron density and the vibrational frequencies. The main contribution to the distortion of the linear configuration is due to the pseudo Jahn-Teller mixing by bending of the sigma(u) HOMO formed by the ligand orbitals with the unoccupied pig orbitals of the metal (with main d(xz) and d(yz) character), resulting in new covalency which stabilizes the bent configuration. We show that the model approaches to the problem, mentioned above, are either restricted particular cases of the pseudo Jahn-Teller interaction, or they yield very small contributions to the instability that do not explain the origin of the bending. All of our conclusions are supported by high-quality ab initio calculations.
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Affiliation(s)
- Pablo Garcia-Fernandez
- Institute for Theoretical Chemistry, Chemistry and Biochemistry Department, The University of Texas at Austin, Austin, Texas 78712-0165, USA
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Hargittai M, Varga Z. Molecular Constants of Aluminum Monohalides: Caveats for Computations of Simple Inorganic Molecules. J Phys Chem A 2006; 111:6-8. [PMID: 17201381 DOI: 10.1021/jp066589r] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Quantum chemical calculations have become an everyday tool in chemistry. There are commercial program packages and downloadable basis sets for most needs. However, many chemists rarely go beyond the routine use of these programs, rarely, if ever, checking the original references for basis sets. In this letter, we point out some of the pitfalls of such an approach. Structural parameters of the aluminum-monohalides, AlF, AlCl, AlBr, and AlI, have been calculated using the Gaussian 03 program package and different basis set combinations.
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