1,3-Diindolylureas and 1,3-Diindolylthioureas: Anion Complexation Studies in Solution and the Solid State

Anion-Coordination-Driven Assembly

The assembly of discrete architectures has been an important subject in supramolecular chemistry because of their elegant structures and fascinating properties. During the last several decades, supramolecular chemists have developed manifold strategies for hierarchical assembly, which are normally classified by two main types of driving force: covalent and noncovalent interactions. Typical noncovalent interactions include metal coordination, hydrogen bonding, and other weak forces. These approaches have achieved great progress in the construction of various supramolecular structures, such as macrocycles, cages, polyhedra, and interlocked systems. Among these methods, metal-coordination-driven assembly is attractive due to the well-defined coordination properties of metal ions. Indeed, in terms of supramolecular chemistry, the concept of "coordination" has been expanded beyond transition metals. In particular, anion coordination chemistry, which was first proposed by Lehn in 1978 [ Acc. Chem. Res. 1978, 11, 49] and then elucidated in detail by Bowman-James two decades later [ Acc. Chem. Res. 2005, 38, 671], has grown up to a subfield of supramolecular chemistry. It is noticeable that anions also show "dual valencies" like transition metals, wherein the "primary valence" is the charge balance for anions by countercations while the "secondary valence", i.e., the coordination, refers to hydrogen bonding interactions where the electron flow is from the electron-rich anion (the coordination center) to hydrogen bonding donors (the ligands). Thus, anions also display certain coordination numbers and specific coordination geometries. Although such features are far less regular than those of transition metals, they are sufficient to allow anion coordination to serve as the driving force for assembling discrete supramolecular architectures. In this Account, the anion-coordination-driven assembly (ACDA), a new assembling strategy established by us during the past decade, will be presented. We summarize our work in the construction of a series of "aniono" supramolecular structures, especially triple helicates and tetrahedral cages, based on the coordination between oligourea ligands and anions (mostly phosphate). In particular, we will detail the considerations in the design of ligands, the assembling process including structural transformation, and functionalization of the systems toward guest inclusion, supramolecular catalysis, photoswitches, and molecular devices. These results demonstrate the great potential of ACDA in fabricating novel anion-based systems. Although the design concept was originally loaned from traditional coordination chemistry of transition metals, and structures of anion complexes bear some resemblance to metal complexes, there are significant differences of the aniono supramolecular assemblies from the metallo analogues. For example, these metal-free systems are held together by multiple hydrogen bonds (dozens to nearly 100), thus facilitating assembly/disassembly under mild conditions and relatively flexible structures for adaptive guest inclusion. To this end, intriguing applications (supramolecular chirality, catalysis, energy storage, etc.) may be expected for aniono systems. We hope the current Account will attract more attention from researchers in supramolecular assembly and inspire more efforts in this fascinating area.

Anion-Responsive Fluorescent Supramolecular Gels

Three novel bis-urea fluorescent low-molecular-weight gelators (LMWGs) based on the tetraethyl diphenylmethane spacer—namely, L1, L2, and L3, bearing indole, dansyl, and quinoline units as fluorogenic fragments, respectively, are able to form gel in different solvents. L2 and L3 gel in apolar solvents such as chlorobenzene and nitrobenzene. Gelator L1 is able to gel in the polar solvent mixture DMSO/H₂O (H₂O 15% v/v). This allowed the study of gel formation in the presence of anions as a third component. An interesting anion-dependent gel formation was observed with fluoride and benzoate inhibiting the gelation process and H₂PO₄⁻, thus causing a delay of 24 h in the gel formation. The interaction of L1 with the anions in solution was clarified by ¹H-NMR titrations and the differences in the cooperativity of the two types of NH H-bond donor groups (one indole NH and two urea NHs) on L1 when binding BzO⁻ or H₂PO₄⁻ were taken into account to explain the inhibition of the gelation in the presence of BzO⁻. DFT calculations corroborate this hypothesis and, more importantly, demonstrate considering a trimeric model of the L1 gel that BzO⁻ favours its disruption into monomers inhibiting the gel formation.

Acridinone-based anion transporters

The arrangement of hydrogen bond donors around a central lipophilic scaffold has proven to be a successful strategy in the development of potent chloride transporters. In this work, we revisit an acridinone 1,9-bis(thio)urea motif which had previously shown promise as an anion sensor and expand the series of compounds by appending a variety of electron-withdrawing groups to the peripheral phenyl moieties. High levels of activity were achieved by the most effective compounds in the series, which facilitated strictly electroneutral transport.

Selective binding of anions by rigidified nanojars: sulfate vs. carbonate

Selective binding and transport of highly hydrophilic anions is ubiquitous in nature, as anion binding proteins can differentiate between similar anions with over a million-fold efficiency. While comparable selectivity has occasionally been achieved for certain anions using small, artificial receptors, the selective binding of certain anions, such as sulfate in the presence of carbonate, remains a very challenging task. Nanojars of the formula [anion⊂{Cu(OH)(pz)}_n]^2- (pz = pyrazolate; n = 27-33) are totally selective for either CO₃^2- or SO₄^2- over anions such as NO₃^-, ClO₄^-, BF₄^-, Cl^-, Br^- and I^-, but cannot differentiate between the two. We hypothesized that rigidification of the nanojar outer shell by tethering pairs of pyrazole moieties together will restrict the possible orientations of the OH hydrogen-bond donor groups in the anion-binding cavity of nanojars, similarly to anion-binding proteins, and will lead to selectivity. Indeed, by using either homoleptic or heteroleptic nanojars of the general formula [anion⊂Cu_n(OH)_n(L2-L6)_y(pz)_n-2y]^2- (n = 26-31) based on a series of homologous ligands HpzCH₂(CH₂)_xCH₂pzH (x = 0-4; H₂L2-H₂L6), selectivity for carbonate (with L2 and with L4-L6/pz mixtures) or for sulfate (with L3) has been achieved. The synthesis of new ligands H₂L3, H₂L4 and H₂L5, X-ray crystal structures of H₂L4 and the tetrahydropyranyl-protected derivatives (THP)₂L4 and (THP)₂L5, synthesis and characterization by electrospray-ionization mass spectrometry (ESI-MS) of carbonate- and sulfate-nanojars derived from ligands H₂L2-H₂L6, as well as detailed selectivity studies for CO₃^2-vs. SO₄^2- using these novel nanojars are presented.

A Two-Dimensional Metallacycle Cross-Linked Switchable Polymer for Fast and Highly Efficient Phosphorylated Peptide Enrichment

The selective and efficient capture of phosphopeptides is critical for comprehensive and in-depth phosphoproteome analysis. Here we report a new switchable two-dimensional (2D) supramolecular polymer that serves as an ideal platform for the enrichment of phosphopeptides. A well-defined, positively charged metallacycle incorporated into the polymer endows the resultant polymer with a high affinity for phosphopeptides. Importantly, the stimuli-responsive nature of the polymer facilitates switchable binding affinity of phosphopeptides, thus resulting in an excellent performance in phosphopeptide enrichment and separation from model proteins. The polymer has a high enrichment capacity (165 mg/g) and detection sensitivity (2 fmol), high enrichment recovery (88%), excellent specificity, and rapid enrichment and separation properties. Additionally, we have demonstrated the capture of phosphopeptides from the tryptic digest of real biosamples, thus illustrating the potential of this polymeric material in phosphoproteomic studies.

Carbazole sulfonamide-based macrocyclic receptors capable of selective complexation of fluoride ion

Two carbazole sulfonamide-based macrocycles 1 and 2 were facilely synthesized and carefully evaluated for their anion recognition properties. The obtained results revealed that macrocycle 1 with a 1,3-xylyl linker was able to bind fluoride ion more strongly and selectively in acetonitrile medium than its strong competitors (like acetate and dihydrogen phosphate anions), with a large binding constant (K_a) of 50 878 M⁻¹. More importantly, an exclusive fluoride recognition was achieved for macrocycle 1 in the more polar DMSO-d₆ solution, albeit with a moderate affinity of K_a = 147 M⁻¹. Compared with macrocycle 1, macrocycle 2 bearing a 2,6-lutidinyl linkage exhibited a remarkable change not only in the anion affinity but also in the anion selectivity, although with only a slight difference in their molecular structures.

Two carbazole sulfonamide-based macrocycles 1 and 2 were facilely synthesized and carefully evaluated for their anion recognition properties.

New dimensions in calix[4]pyrrole: the land of opportunity in supramolecular chemistry

The quest for receptors endowed with the selective complexation and detection of negatively charged species continues to receive substantial consideration within the scientific community worldwide. This study is encouraged by the utilization of anions in nature in a plethora of biological systems such as chloride channels and proteins and as polyanions for genetic information. The molecular recognition of anionic species is greatly interesting in terms of their favourable interactions. In this comprehensive review, in addition to giving accounts of some selected syntheses, we illustrated diverse applications ranging from molecular containers to ion transporters and drug carriers of a supramolecular receptor named calix[4]pyrrole. We believe that the present review may act as a catalyst in enhancing the novel applications of calix[4]pyrrole and its congeners in the other dimensions of science and technology.

The quest for receptors endowed with the selective complexation and detection of negatively charged species continues to receive substantial consideration within the scientific community worldwide.

Fixation of atmospheric CO2 as novel carbonate-(water)2-carbonate cluster and entrapment of double sulfate within a linear tetrameric barrel of a neutral bis-urea scaffold

A meta-phenylenediamine-based disubstituted bis-urea receptor L1 with electron-withdrawing 3-chloro and electron-donating 4-methylphenyl terminals has been established as a potential system to fix and efficiently capture atmospheric CO₂ as air-stable entrapment of an unprecedented {CO₃^2--(H₂O)₂-CO₃^2-} cluster (complex 1a) within its tetrameric long straight pillar-like assembly entirely sealed by n-TBA cations via formation of a barrel-type architecture. L1 and its isomeric 4-bromo-3-methyl disubstituted bis-urea receptor L2 have been found to entrap similar kinds of water-free naked sulfate-sulfate double anion (complexes 1b and 2a) by cooperative binding of urea moieties inside the two pairs of the inversion-symmetric linear tetrameric barrel of L1 and L2, respectively. On the other hand, in the presence of excess halides, L1 self-assembles to form hexa-coordinated fluoride complex 1c and tetra-coordinated bromide complex 1d, while L2 self-assembles to form penta-coordinated fluoride complex 2b in the solid state via semicircular receptor architectures and non-cooperative H-bonding interactions of urea moieties.

Colorimetric chemosensors based on diketopyrrolopyrrole for selective and reversible recognition of fluoride ions

A series of colorimetric and reversible receptors for fluoride anions based on diketopyrrolopyrrole (DPP) were designed and synthesized successfully. The position of nitro substituent on the phenylhydrazide affected the alteration of photophysical properties to varying degrees. While the photoluminescence intensity of receptor 1 was weaker than that of receptor 2 and receptor 3 on account of the formation of intramolecular hydrogen bond deriving from oxygen atom of nitro substituent and hydrogen atom of hydrazide. The receptor 2 was a preferable chemosensor for responding fluoride anions. The fluorescence was quenched in the presence of fluoride anion resulted from the photo-induced electron transfer (PET) effect from the amide. The formation of deprotonation species, which produced by hydrazide NH moiety and F^- was answerable for the spectral changes. Especially, the spectral and color responses of receptors could be switched back and forth successively by adding F^- and HSO₄^- anions in DMSO solution. These receptors could response fluoride anion sensitively, visually and selectively in a manner of reversible with a low determination.

Halo-methylphenyl substituted neutral tripodal receptors for cation-assisted encapsulation of anionic guests of varied dimensionality

Two neutral tris([(halo-methylphenyl)amino]ethyl)-urea receptors with asymmetric electronic aryl-functionalization have been developed for encapsulation of anionic guests of variable size.

Cyclic (H2O)6confined hexameric host–guest assemblies and aerial CO2fixation by electron-rich neutral urea/thiourea scaffolds

Neutral capsular assemblies of electron-rich tris-urea/thiourea receptors are formedviacyclic (H₂O)₆trapping or atmospheric CO₂fixation.

Neutral host–guest capsular associations by a homologous halophenyl-substituted organic tris-urea receptor series: solid and solution state studies

Efficient and regular construction of unimolecular fluoride-encapsulated complexes and oxyanion-bound dimeric capsular assemblies by three electron-deficient neutral tris-urea receptors is observed corroborated by solution-state analysis.

Anion Recognition Strategies Based on Combined Noncovalent Interactions

This review highlights the most significant examples of an emerging field in the design of highly selective anion receptors. To date, there has been remarkable progress in the binding and sensing of anions. This has been driven in part by the discovery of ways to construct effective anion binding receptors using the dominant N-H functional groups and neutral and cationic C-H hydrogen bond donors, as well as underexplored strong directional noncovalent interactions such as halogen-bonding and anion-π interactions. In this review, we will describe a new and promising strategy for constructing anion binding receptors with distinct advantages arising from their elaborate design, incorporating multiple binding sites able to interact cooperatively with anions through these different kinds of noncovalent interactions. Comparisons with control species or solely hydrogen-bonding analogues reveal unique characteristics in terms of strength, selectivity, and interaction geometry, representing important advances in the rising field of supramolecular chemistry.

A Bis-calix[4]pyrrole Enzyme Mimic That Constrains Two Oxoanions in Close Proximity

Herein we describe a large capsule-like bis-calix[4]pyrrole 1, which is able to host concurrently two dihydrogen phosphate anions within a relatively large internal cavity. Evidence for the concurrent, dual recognition of the encapsulated anions came from ¹H NMR and UV-vis spectroscopies and ITC titrations carried out in CD₂Cl₂/CD₃OD (9/1, v/v) or dichloroethane (DCE), as well as single crystal X-ray diffraction analyses. Receptor 1 was also found to bind two dianionic sulfate anions bridged by two water molecules in the solid state. The resulting sulfate dimer was retained in DCE solution, as evidenced by spectroscopic analyses. Finally, receptor 1 was found capable of accommodating two trianionic pyrophosphate anions in the cavity. The present experimental findings are supported by DFT calculations along with ¹H NMR and UV-vis spectroscopies, ITC studies, and single crystal X-ray diffraction analyses.

Systematic size mediated trapping of anions of varied dimensionality within a dimeric capsular assembly of a flexible neutral bis-urea platform

The systematic and consistent size mediated recognition of spherical, planar and tetrahedral anions is observed within a neutral cation-sealed dimeric capsular assembly of a meta-difunctionalized organic bis-urea receptor in solid and solution states.

Fluorescent transmembrane anion transporters: shedding light on anionophoric activity in cells

A series of fluorescent anion transporters have been synthesised and their anion transport properties and interactions with cancer cell lines studied.

A series of fluorescent anion transporters consisting of a urea or thiourea group linked to a naphthalimide fluorophore have been synthesised and their anion transport properties studied. The compounds possess similar anion transport properties to (thio)urea-based anionophores that have previously been reported. Fluorescence studies in cells show all anionophores cross the plasma membrane and localise within the interior of cells. The most lipophilic, aromatic substituted transporters localise homogeneously throughout the cell and are toxic towards cancer cells with the highly fluorinated compound 6 being the most effective. The least lipophilic, alkyl substituted transporters localise in specific vesicles and are non-toxic to cells. This work provides new insight to the actions of anionophores in cells and may be useful in the design of novel antineoplastic agents.

Incarceration of one or two phosphate or arsenate species within nanojars, capped nanojars and nanohelicages: helical chirality from two closely-spaced, head-to-head PO4(3-) or AsO4(3-) ions

Unprecedentedly strong binding of HXO4(2-) and XO4(3-) ions (X = P or As) within self-assembled nanohosts with protein-like anion binding cavities is reported. One of the nanohosts binds two XO4(3-) ions at an unusually short distance, resulting in helical chirality.

The maiden report of a fluorescent-colorimetric sensor for expeditious detection of bifluoride ion in aqueous media

A fluorescent-colorimetric chemosensor L, for rapid detection of bifluoride ion has been developed based on a simple bis-Schiff base.

Curcumin based chemosensor for selective detection of fluoride and cyanide anions in aqueous media

The conjugate N,N-dimethyl curcumin analogue fluorophore dye 1 has been synthesized and its performance as a sensor was demonstrated.

Anion binding of a neutral bis(cyclopeptide) in water-methanol mixtures containing up to 95% water

Anion receptor 2b was designed and synthesized, which was structurally derived from a previously described bis(cyclopeptide) 2a comprising two covalently linked cyclic hexapeptide rings with alternating L-proline and 6-aminopicolinic acid subunits. Solubilizing groups attached to the aromatic cyclopeptide subunits of 2b cause a substantial improvement of water solubility with respect to 2a, but have negligible effects on anion binding properties. Thus, anion affinity of 2b could be evaluated in aqueous solvent mixtures in which 2a is not sufficiently soluble, namely in water–methanol with a water content of up to 95 vol%. The solvent-dependent characterization of anion binding showed that the logKa values of the iodide and sulfate complexes of 2b decrease linearly with increasing water content while the individual contributions of complexation enthalpy and entropy correlate with the solvent composition in a more complex manner. The obtained results provide insight into the factors that control anion affinity and selectivity of these neutral receptors in aqueous media. In addition, they show that substantial anion affinity can be expected even in 100% water.

Synthesis and UV/Vis analysis of amino acid-derived bisurea-type receptors involving anion complexation

Sixteen new bisurea compounds incorporating versatile proteinogenic amino acids as well as nipecotic acid have been synthesized via addition reaction to aryl diisocyanates. The products were analytically characterized and their ability for anion recognition was studied by UV/Vis spectroscopy. In the presence of fluoride, acetate or dihydrogenphosphate ions, hyperchromic and bathochromic peak shifts were determined. By way of contrast, bromide, iodide, or hydrogensulfate ions cause no significant change of absorbance. The special effect of heterocyclic derivatives was explained by molecular modeling calculations. In addition, the crystal structure of the byproduct dimethyl N,N′-(1,4-phenylene)dicarbamate is discussed.

Novel indole based dual responsive "turn-on" chemosensor for fluoride ion detection

An efficient new dual channel chemosensor 2,3-bis((E)-(1H-indole-3-yl)methyleneamino)maleonitrile (DN) which exhibits selective sensing of F(-) ions in DMSO, was synthesized by a facile one step condensation reaction of indole-3-carboxaldehyde with diaminomaleonitrile. The probe DN was characterized by elemental analysis, (1)H, (13)C-NMR, ESI-MS and IR spectral techniques. Upon addition of F(-), DN induces remarkable changes in both absorption and fluorescence spectra on the basis of charge transfer mechanism. The receptor DN serves for highly selective, sensitive detection of F(-) without the interference of other relevant anions. The Job's plot analysis indicates the binding stoichiometry to be 1:1 (host/guest).

Advances in anion supramolecular chemistry: from recognition to chemical applications

Since the start of this millennium, remarkable progress in the binding and sensing of anions has been taking place, driven in part by discoveries in the use of hydrogen bonding, as well as the previously under-exploited anion-π interactions and halogen bonding. However, anion supramolecular chemistry has developed substantially beyond anion recognition, and now encompasses a diverse range of disciplines. Dramatic advance has been made in the anion-templated synthesis of macrocycles and interlocked molecular architectures, while the study of transmembrane anion transporters has flourished from almost nothing into a rapidly maturing field of research. The supramolecular chemistry of anions has also found real practical use in a variety of applications such as catalysis, ion extraction, and the use of anions as stimuli for responsive chemical systems.

Exploratory studies towards various anion recognition chemistry by two different sized cleft shaped organic ligands

Indole and urea based two organic receptors have been synthesized by an easy synthetic process. These two receptors have strong sensitivity and selectivity for several bio-relevant anions. Receptor 1 and 2 were synthesized from indole-2-carboxylic acid and p-anisidine respectively, which are low cost starting materials. Receptor 1 can selectively sense anions like F(-), OAc(-) and H2PO4(-), while receptor 2 can only sense F(-) and H2PO4(-). Both receptors are silent toward anions like Cl(-), Br(-), I(-) and NO3(-). It is the difference in their shape and size which are responsible for different anion sensing. The nature of these host-guest type interactions was analyzed by convenient spectrophotometric techniques like UV-Vis, fluorescence, (1)H NMR, FT-IR studies and also confirmed by electrochemical techniques like cyclic voltammetry studies of the two ligand receptors with convenient anions. Between receptor 1 and 2, receptor 2 was crystallographically characterized also.

Arylpyrrole oligomers as tunable anion receptors

A novel class of oligomeric arylpyrrole receptors has been designed, prepared and analysed for their affinity towards anionic guests.

Supramolecular gels for the remediation of reactive organophosphorus compounds

Pyridine-based gels formed with a cyclohexyl diamide gelator have been shown to undergo a gel–sol transition upon addition of the organophosphorus (OP) chemical warfare agent (CWA) simulant diethyl chlorophosphate (DCP).

The first bifluoride sensor based on fluorescent enhancement

The first fluorescent sensor for HF2(-) anion, N(1), N(3)-di(naphthalene-1-yl)isophthalamide (L) has been derived from α-Napthylamine and isopthaloyl chloride. In 1:1 (v/v) DMSO:H2O, L exhibits high selectivity towards HF2(-) anion with a 4-fold enhancement in fluorescent intensity. Very little enhancement in fluorescence intensity is observed for F(-), Cl(-), Br(-), I(-), SCN(-), PO4(3-), SO4(2-), and CH3COO(-) anions. The stoichiometry interaction between L and HF2 (-) is found to be 1:1 from fluorescence and UV/Visible spectral data. DFT calculation shows that binding between HF2(-) and L is 1:1 and increases the relative planarity between the two naphthyl rings causing fluorescence enhancement. A shift of 0.080 V in oxidation potential of L is observed on interaction with HF2(-) by cyclic voltammetry and square wave voltammetry.