1
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McDermott PE, Fearraigh MPÓ, Horan AM, McGarrigle EM. Thiourea-catalysed conjugate additions of amines to vinyl phosphonates and phosphinates. Org Biomol Chem 2023; 21:1027-1032. [PMID: 36607271 DOI: 10.1039/d2ob02116a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Thiourea catalysts activated α,β-unsaturated phosphonates and phosphinates toward conjugate addition by amines to give β-aminophosphonates and β-aminophosphinates. The organocatalytic methodology was used to synthesise 15 β-aminophosphonates and -phosphinates in yields up to 99%. A gram-scale example furnished the corresponding β-aminophosphonate in an isolated yield of 99% with 97% catalyst recovery. Based on mechanistic experiments, hydrogen bonding between the phosphoryl oxygen and thiourea are proposed to play a crucial role in substrate activation.
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Affiliation(s)
- Peter E McDermott
- A2P CDT in sustainable chemistry and BiOrbic Bioeconomy SFI Research Centre, University College Dublin, Belfield, Dublin 4, Ireland. .,Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Martin P Ó Fearraigh
- Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Alexandra M Horan
- Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.,SSPC, the SFI Research Centre for Pharmaceuticals, Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Eoghan M McGarrigle
- A2P CDT in sustainable chemistry and BiOrbic Bioeconomy SFI Research Centre, University College Dublin, Belfield, Dublin 4, Ireland. .,Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.,SSPC, the SFI Research Centre for Pharmaceuticals, Centre for Synthesis & Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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2
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Gallarati S, van Gerwen P, Laplaza R, Vela S, Fabrizio A, Corminboeuf C. OSCAR: an extensive repository of chemically and functionally diverse organocatalysts. Chem Sci 2022; 13:13782-13794. [PMID: 36544722 PMCID: PMC9710326 DOI: 10.1039/d2sc04251g] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 10/24/2022] [Indexed: 12/24/2022] Open
Abstract
The automated construction of datasets has become increasingly relevant in computational chemistry. While transition-metal catalysis has greatly benefitted from bottom-up or top-down strategies for the curation of organometallic complexes libraries, the field of organocatalysis is mostly dominated by case-by-case studies, with a lack of transferable data-driven tools that facilitate both the exploration of a wider range of catalyst space and the optimization of reaction properties. For these reasons, we introduce OSCAR, a repository of 4000 experimentally derived organocatalysts along with their corresponding building blocks and combinatorially enriched structures. We outline the fragment-based approach used for database generation and showcase the chemical diversity, in terms of functions and molecular properties, covered in OSCAR. The structures and corresponding stereoelectronic properties are publicly available (https://archive.materialscloud.org/record/2022.106) and constitute the starting point to build generative and predictive models for organocatalyst performance.
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Affiliation(s)
- Simone Gallarati
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
| | - Puck van Gerwen
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland,National Center for Competence in Research – Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
| | - Ruben Laplaza
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland,National Center for Competence in Research – Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
| | - Sergi Vela
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
| | - Alberto Fabrizio
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland,National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
| | - Clemence Corminboeuf
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland,National Center for Competence in Research – Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland,National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL)1015 LausanneSwitzerland
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3
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Hernández-Rodríguez M, Jiménez EI, Cantú-Reyes M, Flores-Ramos M, Román-Chavarría CA, Díaz-Salazar H. Dynamic Kinetic Resolution of Azlactones by Bifunctional Thioureas with α‑Trifluoromethyl or Methyl Groups. Synlett 2022. [DOI: 10.1055/a-1892-9911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
AbstractThe asymmetric ring opening of azlactones via dynamic kinetic resolution (DKR) is investigated by contrasting thioureas incorporating 1-arylethyl substituents against their more acidic trifluoromethylated analogs. All the catalysts under study outperform Takemoto’s thiourea because of the inclusion of an additional chiral center. However, the difference in yield and selectivity between the fluorinated and non-fluorinated catalysts is minimal. We explain this observation by analysis of calculated transition states. Our findings show that the hydrogen bond (HB) between the NH linked to the 1-arylethyl and the negatively charged oxygen in the benzyloxy ion is the longest in the HB network, whereas the HB between the ammonium group and the same oxygen atom is the shortest. Thus, the substituents and the HB donor ability of this chiral fragment attached to the thiourea are not important in the reaction.
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4
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McLeod DA, Thøgersen MK, Barløse CL, Skipper ML, Obregón EB, Jørgensen KA. Enantioselective (8+3) Cycloadditions by Activation of Donor-Acceptor Cyclopropanes Employing Chiral Brønsted Base Catalysis. Angew Chem Int Ed Engl 2022; 61:e202206096. [PMID: 35580010 PMCID: PMC9401081 DOI: 10.1002/anie.202206096] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Indexed: 12/18/2022]
Abstract
A novel enantioselective (8+3) cycloaddition between donor-acceptor cyclopropanes and heptafulvenoids catalysed by a chiral bifunctional Brønsted base is described. Importantly, the reaction, which leverages an anionic activation strategy, is divergent from prototypical Lewis-acid activation protocols. A series of cyclopropylketones react with tropones affording the desired (8+3) cycloadducts in high yield and enantiomeric excess. For barbiturate substituted heptafulvenes, the (8+3) cycloaddition with cyclopropylketones proceeds in good yield, excellent diastereoselectivity and high enantiomeric excess. The experimental work is supported by DFT calculations, which indicate that the bifunctional organocatalyst activates both the donor-acceptor cyclopropane and tropone; the reaction proceeds in a step-wise manner with the ring-closure being the stereodetermining step.
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5
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McLeod DA, Thøgersen MK, Barløse CL, Skipper ML, Obregón EB, Jørgensen KA. Enantioselective (8+3) Cycloadditions by Activation of Donor–Acceptor Cyclopropanes Employing Chiral Brønsted Base Catalysis. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- David A. McLeod
- Department of Chemistry Aarhus University 8000 Aarhus C Denmark
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6
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Faihan AS, Al-Jibori SA, Al-Janabi AS. Novel base-free dianion complexes of Pt(II) and Pd(II) derived from heterocyclic thiourea and tertiary phosphine ligands. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131966] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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7
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Xu J, Wang X, Liu J, Feng X, Gnanou Y, Hadjichristidis N. Ionic H-bonding organocatalysts for the ring-opening polymerization of cyclic esters and cyclic carbonates. Prog Polym Sci 2022. [DOI: 10.1016/j.progpolymsci.2021.101484] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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8
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Gallarati S, Laplaza R, Corminboeuf C. Harvesting the fragment-based nature of bifunctional organocatalysts to enhance their activity. Org Chem Front 2022. [DOI: 10.1039/d2qo00550f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Enhancing the activity of bifunctional organocatalysts: a fragment-based approach coupled with activity maps helps identifying better-performing catalytic motifs.
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Affiliation(s)
- Simone Gallarati
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Ruben Laplaza
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- National Center for Competence in Research – Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Clemence Corminboeuf
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- National Center for Competence in Research – Catalysis (NCCR-Catalysis), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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9
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Faihan AS, Al-Jibori SA, Hatshan MR, Al-Janabi AS. Antibacterial, spectroscopic and X-ray crystallography of newly prepared heterocyclic thiourea dianion platinum(II) complexes with tertiary phosphine ligands. Polyhedron 2022. [DOI: 10.1016/j.poly.2021.115602] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Thiourea Organocatalysts as Emerging Chiral Pollutants: En Route to Porphyrin-Based (Chir)Optical Sensing. CHEMOSENSORS 2021. [DOI: 10.3390/chemosensors9100278] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Environmental pollution with chiral organic compounds is an emerging problem requiring innovative sensing methods. Amino-functionalized thioureas, such as 2-(dimethylamino)cyclohexyl-(3,5-bis(trifluoromethyl)phenyl)thiourea (Takemoto’s catalyst), are widely used organocatalysts with virtually unknown environmental safety data. Ecotoxicity studies based on the Vibrio fischeri luminescence inhibition test reveal significant toxicity of Takemoto’s catalyst (EC50 = 7.9 mg/L) and its NH2-substituted analog (EC50 = 7.2–7.4 mg/L). The observed toxic effect was pronounced by the influence of the trifluoromethyl moiety. En route to the porphyrin-based chemosensing of Takemoto-type thioureas, their supramolecular binding to a series of zinc porphyrins was studied with UV-Vis and circular dichroism (CD) spectroscopy, computational analysis and single crystal X-ray diffraction. The association constant values generally increased with the increasing electron-withdrawing properties of the porphyrins and electron-donating ability of the thioureas, a result of the predominant Zn⋯N cation–dipole (Lewis acid–base) interaction. The binding event induced a CD signal in the Soret band region of the porphyrin hosts—a crucial property for chirality sensing of Takemoto-type thioureas.
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11
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García‐Urricelqui A, Cózar A, Campano TE, Mielgo A, Palomo C. syn
‐Selective Michael Reaction of α‐Branched Aryl Acetaldehydes with Nitroolefins Promoted by Squaric Amino Acid Derived Bifunctional Brønsted Bases. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100355] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Ane García‐Urricelqui
- Departamento de Química Orgánica I Universidad del País Vasco UPV/EHU Manuel Lardizábal 3 20018 San Sebastián Spain
| | - Abel Cózar
- Departamento de Química Orgánica I Universidad del País Vasco UPV/EHU Manuel Lardizábal 3 20018 San Sebastián Spain
- IKERBASQUE Basque Foundation for Science 48009 Blbao Spain
| | - Teresa E. Campano
- Departamento de Química Orgánica I Universidad del País Vasco UPV/EHU Manuel Lardizábal 3 20018 San Sebastián Spain
| | - Antonia Mielgo
- Departamento de Química Orgánica I Universidad del País Vasco UPV/EHU Manuel Lardizábal 3 20018 San Sebastián Spain
| | - Claudio Palomo
- Departamento de Química Orgánica I Universidad del País Vasco UPV/EHU Manuel Lardizábal 3 20018 San Sebastián Spain
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12
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Non-Covalent Interactions in Enantioselective Organocatalysis: Theoretical and Mechanistic Studies of Reactions Mediated by Dual H-Bond Donors, Bifunctional Squaramides, Thioureas and Related Catalysts. Catalysts 2021. [DOI: 10.3390/catal11050569] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Chiral bifunctional dual H-bond donor catalysts have become one of the pillars of organocatalysis. They include squaramide, thiosquaramide, thiourea, urea, and even selenourea-based catalysts combined with chiral amines, cinchona alkaloids, sulfides, phosphines and more. They can promote several types of reactions affording products in very high yields and excellent stereoselectivities in many cases: conjugate additions, cycloadditions, the aldol and Henry reactions, the Morita–Baylis–Hilman reaction, even cascade reactions, among others. The desire to understand mechanisms and the quest for the origins of stereoselectivity, in attempts to find guidelines for developing more efficient catalysts for new transformations, has promoted many mechanistic and theoretical studies. In this review, we survey the literature published in this area since 2015.
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13
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Zielińska-Błajet M, Najdek J. Novel Selenoureas Based on Cinchona Alkaloid Skeleton: Synthesis and Catalytic Investigations. MATERIALS 2021; 14:ma14030600. [PMID: 33525376 PMCID: PMC7866029 DOI: 10.3390/ma14030600] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/20/2021] [Accepted: 01/23/2021] [Indexed: 01/06/2023]
Abstract
An efficient approach to the synthesis of chiral selenoureas consisting of Cinchona alkaloid scaffolds was described. The new selenoureas were assessed as bifunctional organocatalysts in the asymmetric Michael addition reactions under mild conditions. The best results were obtained for selenoureas bearing the 4-fluorophenyl group. These catalysts promoted the reactions with enantioselectivities of up to 96% ee. Additionally, the catalytic performance of the thiourea and selenourea counterpart was compared.
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Affiliation(s)
- Mariola Zielińska-Błajet
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
- Correspondence: ; Tel.: +48-71-3202128
| | - Joanna Najdek
- Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany;
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14
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Díaz-Salazar H, Jiménez EI, Vallejo Narváez WE, Rocha-Rinza T, Hernández-Rodríguez M. Bifunctional squaramides with benzyl-like fragments: analysis of CH⋯π interactions by a multivariate linear regression model and quantum chemical topology. Org Chem Front 2021. [DOI: 10.1039/d0qo01610a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A multivariate linear regression model and quantum chemical topology are used for the quantitative description of non-covalent interactions in the transition state of the Michael addition catalyzed by bifunctional squaramides.
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Affiliation(s)
- Howard Díaz-Salazar
- Instituto de Química
- Universidad Nacional Autónoma de México
- Circuito Exterior
- Ciudad Universitaria
- Mexico
| | - Eddy I. Jiménez
- Instituto de Química
- Universidad Nacional Autónoma de México
- Circuito Exterior
- Ciudad Universitaria
- Mexico
| | - Wilmer E. Vallejo Narváez
- Instituto de Química
- Universidad Nacional Autónoma de México
- Circuito Exterior
- Ciudad Universitaria
- Mexico
| | - Tomás Rocha-Rinza
- Instituto de Química
- Universidad Nacional Autónoma de México
- Circuito Exterior
- Ciudad Universitaria
- Mexico
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15
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Werth J, Sigman MS. Connecting and Analyzing Enantioselective Bifunctional Hydrogen Bond Donor Catalysis Using Data Science Tools. J Am Chem Soc 2020; 142:16382-16391. [PMID: 32844647 DOI: 10.1021/jacs.0c06905] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The generalization of related asymmetric processes in organocatalyzed reactions is an ongoing challenge due to subtle, noncovalent interactions that drive selectivity. The lack of transferability is often met with a largely empirical approach to optimizing catalyst structure and reaction conditions. This has led to the development of diverse structural catalyst motifs and inspired unique design principles in this field. Bifunctional hydrogen bond donor (HBD) catalysis exemplifies this in which a broad collection of enantioselective transformations has been successfully developed. Herein, we describe the use of data science methods to connect catalyst and substrate structural features of an array of reported enantioselective bifunctional HBD catalysis through an iterative statistical modeling process. The computational parameters used to build the correlations are mechanism-specific based on the proposed transition states, which allows for analysis into the noncovalent interactions responsible for asymmetric induction. The resulting statistical models also allow for extrapolation to out-of-sample examples to provide a prediction platform that can be used for future applications of bifunctional hydrogen bond donor catalysis. Finally, this multireaction workflow presents an opportunity to build statistical models unifying various modes of activation relevant to asymmetric organocatalysis.
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Affiliation(s)
- Jacob Werth
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Matthew S Sigman
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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16
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Yang Q, Li Y, Yang J, Liu Y, Zhang L, Luo S, Cheng J. Holistic Prediction of the p
K
a
in Diverse Solvents Based on a Machine‐Learning Approach. Angew Chem Int Ed Engl 2020; 59:19282-19291. [DOI: 10.1002/anie.202008528] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 07/13/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Qi Yang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Yao Li
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Jin‐Dong Yang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Yidi Liu
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Long Zhang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Sanzhong Luo
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Jin‐Pei Cheng
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
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17
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Yang Q, Li Y, Yang J, Liu Y, Zhang L, Luo S, Cheng J. Holistic Prediction of the p
K
a
in Diverse Solvents Based on a Machine‐Learning Approach. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008528] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Qi Yang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Yao Li
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Jin‐Dong Yang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Yidi Liu
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Long Zhang
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Sanzhong Luo
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
| | - Jin‐Pei Cheng
- Center of Basic Molecular Science Department of Chemistry Tsinghua University 100084 Beijing China
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18
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Li ML, Yu JH, Li YH, Zhu SF, Zhou QL. Highly enantioselective carbene insertion into N-H bonds of aliphatic amines. Science 2020; 366:990-994. [PMID: 31753998 DOI: 10.1126/science.aaw9939] [Citation(s) in RCA: 148] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 09/17/2019] [Indexed: 02/03/2023]
Abstract
Aliphatic amines strongly coordinate, and therefore easily inhibit, the activity of transition-metal catalysts, posing a marked challenge to nitrogen-hydrogen (N-H) insertion reactions. Here, we report highly enantioselective carbene insertion into N-H bonds of aliphatic amines using two catalysts in tandem: an achiral copper complex and chiral amino-thiourea. Coordination by a homoscorpionate ligand protects the copper center that activates the carbene precursor. The chiral amino-thiourea catalyst then promotes enantioselective proton transfer to generate the stereocenter of the insertion product. This reaction couples a wide variety of diazo esters and amines to produce chiral α-alkyl α-amino acid derivatives.
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Affiliation(s)
- Mao-Lin Li
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Jin-Han Yu
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Yi-Hao Li
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Shou-Fei Zhu
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Qi-Lin Zhou
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
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19
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Riegel GF, Kass SR. N-Vinyl and N-Aryl Hydroxypyridinium Ions: Charge-Activated Catalysts with Electron-Withdrawing Groups. J Org Chem 2020; 85:6017-6026. [DOI: 10.1021/acs.joc.0c00498] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- George F. Riegel
- Department of Chemistry, University of Minnesota, 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
| | - Steven R. Kass
- Department of Chemistry, University of Minnesota, 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
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20
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Bartoccini F, Mari M, Retini M, Galarini R, Bartolucci S, Piersanti G. Single‐Step Synthesis of Dehydroalanine Derivatives via a Brønsted Acid‐Catalyzed Multicomponent Reaction. ChemistrySelect 2020. [DOI: 10.1002/slct.202000898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Francesca Bartoccini
- Department of Biomolecular SciencesUniversity of Urbino Carlo Bo Piazza Rinascimento 6 61029 Urbino, PU Italy
| | - Michele Mari
- Department of Biomolecular SciencesUniversity of Urbino Carlo Bo Piazza Rinascimento 6 61029 Urbino, PU Italy
| | - Michele Retini
- Department of Biomolecular SciencesUniversity of Urbino Carlo Bo Piazza Rinascimento 6 61029 Urbino, PU Italy
| | - Roberta Galarini
- Centro Sviluppo e Validazione MetodiIstituto Zooprofilattico Sperimentale dell'Umbria e delle Marche “Togo Rosati” Via G. Salvemini 1 06126 Perugia, PG Italy
| | - Silvia Bartolucci
- Department of Biomolecular SciencesUniversity of Urbino Carlo Bo Piazza Rinascimento 6 61029 Urbino, PU Italy
| | - Giovanni Piersanti
- Department of Biomolecular SciencesUniversity of Urbino Carlo Bo Piazza Rinascimento 6 61029 Urbino, PU Italy
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21
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Joshi H, Yadav A, Das A, Singh VK. Organocatalytic Asymmetric Hetero-Diels–Alder Reaction of in Situ Generated Dienes: Access to α,β-Unsaturated δ-Lactones Featuring CF3-Substituted Quaternary Stereocenter. J Org Chem 2020; 85:3202-3212. [DOI: 10.1021/acs.joc.9b03076] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Harshit Joshi
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India
| | - Ankit Yadav
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India
| | - Arko Das
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India
| | - Vinod K. Singh
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, UP, India
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22
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Vazquez-Chavez J, Luna-Morales S, Cruz-Aguilar DA, Díaz-Salazar H, Vallejo Narváez WE, Silva-Gutiérrez RS, Hernández-Ortega S, Rocha-Rinza T, Hernández-Rodríguez M. The effect of chiral N-substituents with methyl or trifluoromethyl groups on the catalytic performance of mono- and bifunctional thioureas. Org Biomol Chem 2019; 17:10045-10051. [PMID: 31746909 DOI: 10.1039/c9ob01893j] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We evaluated thiourea organocatalysts that incorporate a chiral group which includes a trifluoromethyl moiety and contrasted their performance with non-fluorinated analogs. The comparison between such systems allows the direct study of the NH acidity of a thiourea bonded to an aliphatic substituent. In principle, -CF3 systems feature an enhanced hydrogen bond (HB) donor capacity that is undoubtedly beneficial for HB-catalysis applied to the Baylis-Hillman reaction. We found that the thiourea substituted on both nitrogens with this group accelerates this reaction like Schreiner's thiourea. On the other hand, we observed a different behavior in reactions promoted by bifunctional catalysts (thiourea-primary amine). In the Michael addition of isobutyraldehyde to methyl benzylidenepyruvate, the -CF3 containing catalysts were better than the -CH3 systems, whereas the conjugate addition to N-phenylmaleimide showed the opposite behavior. Theoretical calculations of the transition states indicated that the phenylethyl group in fluorinated and non-fluorinated compounds have different kinds of interactions with the electrophile. These interactions are responsible for a different arrangement of the electrophile and thereby the selectivity of the catalyst. Therefore, it cannot be generalized that in all cases NH acidity correlates with the performance of the catalyst, particularly, with aliphatic substituents that unlike the aromatic ones possess groups that are outside the plane of the thiourea.
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Affiliation(s)
- Josué Vazquez-Chavez
- Instituto de Química, Universidad Nacional Autónoma de México. Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, C. P. 04510, Cd. Mx., México.
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23
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Dubey A, Sangwan R, Mandal PK. N-benzoylglycine/thiourea cooperative catalyzed stereoselective O-glycosidation: Activation of O-glycosyl trichloroacetimidate donors. CATAL COMMUN 2019. [DOI: 10.1016/j.catcom.2019.04.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
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24
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Wang Y, Zhou H, Yang K, You C, Zhang L, Luo S. Steric Effect of Protonated Tertiary Amine in Primary–Tertiary Diamine Catalysis: A Double-Layered Sterimol Model. Org Lett 2018; 21:407-411. [DOI: 10.1021/acs.orglett.8b03584] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Yaning Wang
- Key Laboratory for Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Han Zhou
- Key Laboratory for Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Kai Yang
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Chang You
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Long Zhang
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
- Key Laboratory for Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Collaborative Innovation center of Chemical Science and Engineering, Tianjin 300071, China
| | - Sanzhong Luo
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
- Key Laboratory for Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Collaborative Innovation center of Chemical Science and Engineering, Tianjin 300071, China
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25
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Li ZY, Tong HX, Chen Y, Su HK, Xiao T, Sun XQ, Wang L. Asymmetric Michael addition reactions catalyzed by calix[4]thiourea cyclohexanediamine derivatives. Beilstein J Org Chem 2018; 14:1901-1907. [PMID: 30112095 PMCID: PMC6071695 DOI: 10.3762/bjoc.14.164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Accepted: 06/29/2018] [Indexed: 12/19/2022] Open
Abstract
A number of upper rim-functionalized calix[4]thiourea cyclohexanediamine derivatives have been designed, synthesized and used as catalysts for enantioselective Michael addition reactions between nitroolefins and acetylacetone. The optimal catalyst 2 with a mono-thiourea group exhibited good performance in the presence of water/toluene (v/v = 1:2). Under the optimal reaction conditions, high yields of up to 99% and moderate to good enantioselectivities up to 94% ee were achieved. Detailed experiments clearly showed that the upper rim-functionalized hydrophobic calixarene scaffold played an important role in cooperation with the catalytic center to the good reactivities and enantioselectivities.
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Affiliation(s)
- Zheng-Yi Li
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
| | - Hong-Xiao Tong
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
| | - Yuan Chen
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hong-Kui Su
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
| | - Tangxin Xiao
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
| | - Xiao-Qiang Sun
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
| | - Leyong Wang
- Jiangsu Province Key Laboratory of Fine Petrochemical Engineering, School of Petrochemical Engineering, Changzhou University, Changzhou 213164, China
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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26
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Yang JD, Ji P, Xue XS, Cheng JP. Recent Advances and Advisable Applications of Bond Energetics in Organic Chemistry. J Am Chem Soc 2018; 140:8611-8623. [DOI: 10.1021/jacs.8b04104] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Jin-Dong Yang
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Pengju Ji
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Xiao-Song Xue
- State Key Laboratory of Elemento-organic Chemistry, Collaborative Innovation Centre of Chemical Science and Engineering, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Jin-Pei Cheng
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
- State Key Laboratory of Elemento-organic Chemistry, Collaborative Innovation Centre of Chemical Science and Engineering, College of Chemistry, Nankai University, Tianjin 300071, China
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27
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Lin B, Waymouth RM. Organic Ring-Opening Polymerization Catalysts: Reactivity Control by Balancing Acidity. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b00540] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Binhong Lin
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Robert M. Waymouth
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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28
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Kobayashi Y, Nakatsuji Y, Li S, Tsuzuki S, Takemoto Y. Direct N
-Glycofunctionalization of Amides with Glycosyl Trichloroacetimidate by Thiourea/Halogen Bond Donor Co-Catalysis. Angew Chem Int Ed Engl 2018; 57:3646-3650. [DOI: 10.1002/anie.201712726] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 01/16/2018] [Indexed: 12/23/2022]
Affiliation(s)
- Yusuke Kobayashi
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Yuya Nakatsuji
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Shanji Li
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Seiji Tsuzuki
- Research Initiative of Computational Sciences (RICS); Nanosystem Research Institute (NRI); National Institute of Advanced Industrial Science and Technology (AIST); 1-1-1 Umezono Tsukuba Ibaraki 305-8568 Japan
| | - Yoshiji Takemoto
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
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29
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Kobayashi Y, Nakatsuji Y, Li S, Tsuzuki S, Takemoto Y. Direct N
-Glycofunctionalization of Amides with Glycosyl Trichloroacetimidate by Thiourea/Halogen Bond Donor Co-Catalysis. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201712726] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yusuke Kobayashi
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Yuya Nakatsuji
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Shanji Li
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
| | - Seiji Tsuzuki
- Research Initiative of Computational Sciences (RICS); Nanosystem Research Institute (NRI); National Institute of Advanced Industrial Science and Technology (AIST); 1-1-1 Umezono Tsukuba Ibaraki 305-8568 Japan
| | - Yoshiji Takemoto
- Graduate School of Pharmaceutical Sciences; Kyoto University; Yoshida Sakyo-ku Kyoto 606-8501 Japan
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30
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Li S, Liu B, Chen L, Li X, Cheng JP. N-Heterocyclic carbene promoted enantioselective desymmetrization reaction of diarylalkane-bisphenols. Org Chem Front 2018. [DOI: 10.1039/c7qo01083d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An enantioselective NHC-catalyzed desymmetrization reaction of diarylalkane-bisphenols with aldehydes was reported under the guidance of linear free energy relationships (LFERs).
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Affiliation(s)
- Shoulei Li
- State Key Laboratory of Elemento-Organic Chemistry
- Collaborative Innovation Center of Chemical Science and Engineering
- Nankai University
- Tianjin 300071
- China
| | - Bin Liu
- State Key Laboratory of Elemento-Organic Chemistry
- Collaborative Innovation Center of Chemical Science and Engineering
- Nankai University
- Tianjin 300071
- China
| | - Li Chen
- State Key Laboratory of Elemento-Organic Chemistry
- Collaborative Innovation Center of Chemical Science and Engineering
- Nankai University
- Tianjin 300071
- China
| | - Xin Li
- State Key Laboratory of Elemento-Organic Chemistry
- Collaborative Innovation Center of Chemical Science and Engineering
- Nankai University
- Tianjin 300071
- China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-Organic Chemistry
- Collaborative Innovation Center of Chemical Science and Engineering
- Nankai University
- Tianjin 300071
- China
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31
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Fan Y, Kass SR. Enantioselective Friedel-Crafts Alkylation between Nitroalkenes and Indoles Catalyzed by Charge Activated Thiourea Organocatalysts. J Org Chem 2017; 82:13288-13296. [PMID: 29166016 DOI: 10.1021/acs.joc.7b02411] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
A series of methylated and octylated pyridinium and quinolinium containing thiourea salts with a chiral 2-indanol substituent are reported. These organocatalysts are positively charged analogues of privileged bis(3,5-trifluoromethyl)phenyl substituted thioureas, and are found to be much more active catalysts despite the absence of an additional hydrogen bond donor or acceptor site (i.e., the presence of a heteroatom-hydrogen or heteroatom). Friedel-Crafts reactions of trans-β-nitorostyrenes with indoles are examined, and good yields and enantioselectivities are obtained. Mechanistic studies indicate that this is a second-order transformation under the employed conditions, and is consistent with the dimer of the thiourea being the active catalyst. Charged organocatalysts, consequently, represent an attractive design strategy for catalyst development.
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Affiliation(s)
- Yang Fan
- Department of Chemistry, University of Minnesota , 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
| | - Steven R Kass
- Department of Chemistry, University of Minnesota , 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
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32
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Larsen D, Langhorn LM, Akselsen OM, Nielsen BE, Pittelkow M. Thiosemicarbazone organocatalysis: tetrahydropyranylation and 2-deoxygalactosylation reactions and kinetics-based mechanistic investigation. Chem Sci 2017; 8:7978-7982. [PMID: 29568444 PMCID: PMC5853554 DOI: 10.1039/c7sc03366d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Accepted: 09/27/2017] [Indexed: 12/17/2022] Open
Abstract
The first use of thiosemicarbazone-based organocatalysis was demonstrated on both tetrahydropyranylation and 2-deoxygalactosylation reactions. The organocatalysts were optimised using kinetics-based selection. The best catalyst outperformed previously reported thiourea catalysts for tetrahydropyranylation by 50-fold. Hammett investigations of both the organocatalyst and the substrate indicate an oxyanion hole-like reaction mechanism.
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Affiliation(s)
- Dennis Larsen
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , DK-2100 Copenhagen , Denmark .
| | - Line M Langhorn
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , DK-2100 Copenhagen , Denmark .
| | - Olivia M Akselsen
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , DK-2100 Copenhagen , Denmark .
| | - Bjarne E Nielsen
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , DK-2100 Copenhagen , Denmark .
| | - Michael Pittelkow
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , DK-2100 Copenhagen , Denmark .
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33
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Juste-Navarro V, Prieto L, Delso I, Manzano R, Tejero T, Reyes E, Vicario JL, Merino P. A Case Study of Thiourea-Assisted Iminium Formation by Hydroxyl Anion Binding: Kinetic, Spectroscopic and Computational Evidences. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201700986] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Veronica Juste-Navarro
- Instituto de Síntesis Química y Catálisis Homogénea (ISQCH); Universidad de Zaragoza-CSIC; 5009 Zaragoza Spain
| | - Liher Prieto
- Department of Organic Chemistry II; University of the Basque Country (UPV/EHU); P.O. Box 644 48080 Bilbao Spain
| | - Ignacio Delso
- Servicio de RMN, Centro de Química y Materiales de Aragón; Universidad de Zaragoza-CSIC; 5009 Zaragoza Spain
| | - Rubén Manzano
- Department of Organic Chemistry II; University of the Basque Country (UPV/EHU); P.O. Box 644 48080 Bilbao Spain
| | - Tomas Tejero
- Instituto de Síntesis Química y Catálisis Homogénea (ISQCH); Universidad de Zaragoza-CSIC; 5009 Zaragoza Spain
| | - Efraim Reyes
- Department of Organic Chemistry II; University of the Basque Country (UPV/EHU); P.O. Box 644 48080 Bilbao Spain
| | - Jose L. Vicario
- Department of Organic Chemistry II; University of the Basque Country (UPV/EHU); P.O. Box 644 48080 Bilbao Spain
| | - Pedro Merino
- Instituto de Biocomputación y Física de Sistemas Complejos (BIFI); Universidad de Zaragoza-CSIC; 5009 Zaragoza Spain
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34
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Ho J, Zwicker VE, Yuen KKY, Jolliffe KA. Quantum Chemical Prediction of Equilibrium Acidities of Ureas, Deltamides, Squaramides, and Croconamides. J Org Chem 2017; 82:10732-10736. [DOI: 10.1021/acs.joc.7b02083] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Junming Ho
- School
of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
- School
of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Vincent E. Zwicker
- School
of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Karen K. Y. Yuen
- School
of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
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35
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Li Z, Li X, Cheng JP. An Acidity Scale of Triazolium-Based NHC Precursors in DMSO. J Org Chem 2017; 82:9675-9681. [DOI: 10.1021/acs.joc.7b01755] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zhen Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xin Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
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36
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Li Y, Yang GH, He CQ, Li X, Houk KN, Cheng JP. Chirality Sensing of α-Hydroxyphosphonates by N-tert-Butyl Sulfinyl Squaramide. Org Lett 2017; 19:4191-4194. [DOI: 10.1021/acs.orglett.7b01743] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yao Li
- State
key Laboratory of Elemento-Organic Chemistry, College of Chemistry,
Collaborative Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Guo-Hui Yang
- State
key Laboratory of Elemento-Organic Chemistry, College of Chemistry,
Collaborative Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Cyndi Qixin He
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Xin Li
- State
key Laboratory of Elemento-Organic Chemistry, College of Chemistry,
Collaborative Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - K. N. Houk
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Jin-Pei Cheng
- State
key Laboratory of Elemento-Organic Chemistry, College of Chemistry,
Collaborative Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
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37
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Rombola M, Sumaria CS, Montgomery TD, Rawal VH. Development of Chiral, Bifunctional Thiosquaramides: Enantioselective Michael Additions of Barbituric Acids to Nitroalkenes. J Am Chem Soc 2017; 139:5297-5300. [PMID: 28375610 DOI: 10.1021/jacs.7b01115] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report a general method for the synthesis of chiral thiosquaramides, a class of bifunctional catalysts not previously described in the literature. Thiosquaramides are found to be more acidic and significantly more soluble in nonpolar solvents than their oxosquaramide counterparts, and they are excellent catalysts for the unreported, enantioselective conjugate addition reaction of the barbituric acid pharmacaphore to nitroalkenes, delivering the chiral barbiturate derivatives in high yields and high enantioselectivities, even with catalyst loadings as low as 0.05 mol%.
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Affiliation(s)
- Michael Rombola
- Department of Chemistry, University of Chicago , 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Chintan S Sumaria
- Department of Chemistry, University of Chicago , 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Thomas D Montgomery
- Department of Chemistry, University of Chicago , 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Viresh H Rawal
- Department of Chemistry, University of Chicago , 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
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38
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Yang C, Wang J, Liu Y, Ni X, Li X, Cheng J. Study on the Catalytic Behavior of Bifunctional Hydrogen‐Bonding Catalysts Guided by Free Energy Relationship Analysis of Steric Parameters. Chemistry 2017; 23:5488-5497. [DOI: 10.1002/chem.201605666] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Indexed: 01/09/2023]
Affiliation(s)
- Chen Yang
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
| | - Jie Wang
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
| | - Yang Liu
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
| | - Xiang Ni
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
| | - Xin Li
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering Tianjin 300071 P. R. China
| | - Jin‐Pei Cheng
- State Key Laboratory of Elemento-organic Chemistry College of Chemistry Nankai University Tianjin 300071 P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering Tianjin 300071 P. R. China
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39
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Li Y, He CQ, Gao FX, Li Z, Xue XS, Li X, Houk KN, Cheng JP. Design and Applications of N-tert-Butyl Sulfinyl Squaramide Catalysts. Org Lett 2017; 19:1926-1929. [DOI: 10.1021/acs.orglett.7b00727] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Yao Li
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Cyndi Qixin He
- Department of Chemistry and Biochemistry, University of California, Los
Angeles, California 90095, United States
| | - Fei-Xiang Gao
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Zhen Li
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xiao-Song Xue
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xin Li
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los
Angeles, California 90095, United States
| | - Jin-Pei Cheng
- State key Laboratory
of Elemento-Organic Chemistry, College of Chemistry, Collaborative
Innovation Center of Chemical Science and Engineering, Nankai University, Tianjin 300071, China
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40
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Vlatković M, Volarić J, Collins BSL, Bernardi L, Feringa BL. Dynamic control over catalytic function using responsive bisthiourea catalysts. Org Biomol Chem 2017; 15:8285-8294. [DOI: 10.1039/c7ob01851g] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Responsive molecular motor-based bisthiourea organocatalysts were used in the enantioselective Henry reaction to achieve efficient dual stereocontrol in the presence of an external base.
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Affiliation(s)
- M. Vlatković
- Stratingh Institute for Chemistry
- University of Groningen Nijenborgh 4
- Groningen
- The Netherlands
| | - J. Volarić
- Stratingh Institute for Chemistry
- University of Groningen Nijenborgh 4
- Groningen
- The Netherlands
| | - B. S. L. Collins
- Stratingh Institute for Chemistry
- University of Groningen Nijenborgh 4
- Groningen
- The Netherlands
| | - L. Bernardi
- Department of Industrial Chemistry “Toso Montanari” & INSTM RU Bologna
- University of Bologna
- 40136 Bologna
- Italy
| | - B. L. Feringa
- Stratingh Institute for Chemistry
- University of Groningen Nijenborgh 4
- Groningen
- The Netherlands
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41
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Jiménez EI, Vallejo Narváez WE, Rocha-Rinza T, Hernández-Rodríguez M. Design and application of a bifunctional organocatalyst guided by electron density topological analyses. Catal Sci Technol 2017. [DOI: 10.1039/c7cy00430c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Design of a catalyst via the identification of key interactions within the transition state with quantum chemical topology.
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Affiliation(s)
- Eddy I. Jiménez
- Institute of Chemistry
- National Autonomous University of Mexico
- Circuito Exterior
- Ciudad Universitaria
- Mexico City
| | - Wilmer E. Vallejo Narváez
- Institute of Chemistry
- National Autonomous University of Mexico
- Circuito Exterior
- Ciudad Universitaria
- Mexico City
| | - Tomás Rocha-Rinza
- Institute of Chemistry
- National Autonomous University of Mexico
- Circuito Exterior
- Ciudad Universitaria
- Mexico City
| | - Marcos Hernández-Rodríguez
- Institute of Chemistry
- National Autonomous University of Mexico
- Circuito Exterior
- Ciudad Universitaria
- Mexico City
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42
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Colgan AC, Müller-Bunz H, McGarrigle EM. Benzylation Reactions in DMF Lead to an Impurity Which Acts as an Organocatalyst Poison in Thiourea-Catalyzed Glycosylations. J Org Chem 2016; 81:11394-11396. [DOI: 10.1021/acs.joc.6b01914] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Avene C. Colgan
- Centre for Synthesis and
Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Helge Müller-Bunz
- Centre for Synthesis and
Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Eoghan M. McGarrigle
- Centre for Synthesis and
Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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43
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Jiménez EI, Vallejo Narváez WE, Román-Chavarría CA, Vazquez-Chavez J, Rocha-Rinza T, Hernández-Rodríguez M. Bifunctional Thioureas with α-Trifluoromethyl or Methyl Groups: Comparison of Catalytic Performance in Michael Additions. J Org Chem 2016; 81:7419-7431. [PMID: 27400400 DOI: 10.1021/acs.joc.6b01063] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Thioureas are an important scaffold in organocatalysis because of their ability to form hydrogen bonds that activate substrates and fix them in a defined position, which allows a given reaction to occur. Structures that enhance the acidity of the thiourea are usually used to increase the hydrogen-bonding properties, such as 3,5-bis(trifluoromethyl)phenyl and boronate ureas. Herein, we report the synthesis of bifunctional thioureas with a chiral moiety that include either a trifluoromethyl or methyl group. Their catalytic performance in representative Michael addition reactions was used in an effort to compare the electronic effects of the fluorination at the methyl group. The observed differences concerning yields and ee values cannot be attributed solely to the different steric environments; theoretical results indicate distinct interactions within the corresponding transition states. The calculated transition states show that the fluorinated catalysts have stronger N-H···O and C-H···F hydrogen bonds, while the nonfluorinated systems have C-H···π contacts. These results have shown that a variety of hydrogen-bonding interactions are important in determining the yield and selectivity of thiourea organocatalysis. These details can be further exploited in catalyst design.
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Affiliation(s)
- Eddy I Jiménez
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
| | - Wilmer E Vallejo Narváez
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
| | - Carlos A Román-Chavarría
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
| | - Josue Vazquez-Chavez
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
| | - Tomás Rocha-Rinza
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
| | - Marcos Hernández-Rodríguez
- Institute of Chemistry, National Autonomous University of Mexico , Circuito Exterior, Ciudad Universitaria, Del. Coyoacán, 04510 Cd. Mx., Mexico
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44
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Yang C, Zhang EG, Li X, Cheng JP. Asymmetric Conjugate Addition of Benzofuran-2-ones to Alkyl 2-Phthalimidoacrylates: Modeling Structure-Stereoselectivity Relationships with Steric and Electronic Parameters. Angew Chem Int Ed Engl 2016; 55:6506-10. [DOI: 10.1002/anie.201601028] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Revised: 02/29/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Chen Yang
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - En-Ge Zhang
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - Xin Li
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
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45
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Yang C, Zhang EG, Li X, Cheng JP. Asymmetric Conjugate Addition of Benzofuran-2-ones to Alkyl 2-Phthalimidoacrylates: Modeling Structure-Stereoselectivity Relationships with Steric and Electronic Parameters. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201601028] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Chen Yang
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - En-Ge Zhang
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - Xin Li
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-organic Chemistry, Department of Chemistry; Nankai University, and Collaborative Innovation Center of Chemical Science and Engineering; Tianjin 300071 China
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46
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Affiliation(s)
- Yang Fan
- Department
of Chemistry, University of Minnesota, 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
| | - Steven R. Kass
- Department
of Chemistry, University of Minnesota, 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
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47
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Ni X, Li X, Cheng JP. Equilibrium acidities of cinchona alkaloid organocatalysts bearing 6′-hydrogen bonding donors in DMSO. Org Chem Front 2016. [DOI: 10.1039/c5qo00305a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The pKa values of 18 cinchona alkaloid based organocatalysts bearing 6′-hydrogen bonding donors were determined by the overlapping indicator method in DMSO via UV spectrophotometric titrations. The pKa values are in the range of 6.76–20.24.
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Affiliation(s)
- Xiang Ni
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemistry
- Nankai University
- Tianjin 300071
- China
| | - Xin Li
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemistry
- Nankai University
- Tianjin 300071
- China
| | - Jin-Pei Cheng
- Collaborative Innovation Center of Chemical Science and Engineering
- Tianjin 300071
- China
- Center of Basic Molecular Science
- Department of Chemistry
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48
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Ni X, Li X, Li Z, Cheng JP. Equilibrium acidities of BINOL type chiral phenolic hydrogen bonding donors in DMSO. Org Chem Front 2016. [DOI: 10.1039/c6qo00252h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The pKa values of fifteen BINOL type chiral phenolic catalysts were determined by the overlapping indicator method in DMSO via UV spectrophotometric titrations. The pKa values are in the range of 9.30–16.43.
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Affiliation(s)
- Xiang Ni
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemistry
- Nankai University
- Tianjin 300071
- China
| | - Xin Li
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemistry
- Nankai University
- Tianjin 300071
- China
| | - Zhen Li
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemistry
- Nankai University
- Tianjin 300071
- China
| | - Jin-Pei Cheng
- Collaborative Innovation Center of Chemical Science and Engineering
- Tianjin 300071
- China
- Center of Basic Molecular Science
- Department of Chemistry
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49
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Experimental and Theoretical Studies in Hydrogen-Bonding Organocatalysis. Molecules 2015; 20:15500-24. [PMID: 26343615 PMCID: PMC6331831 DOI: 10.3390/molecules200915500] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Revised: 08/14/2015] [Accepted: 08/17/2015] [Indexed: 12/31/2022] Open
Abstract
Chiral thioureas and squaramides are among the most prominent hydrogen-bond bifunctional organocatalysts now extensively used for various transformations, including aldol, Michael, Mannich and Diels-Alder reactions. More importantly, the experimental and computational study of the mode of activation has begun to attract considerable attention. Various experimental, spectroscopic and calculation methods are now frequently used, often as an integrated approach, to establish the reaction mechanism, the mode of activation or explain the stereochemical outcome of the reaction. This article comprises several case studies, sorted according to the method used in their study. The aim of this review is to give the investigators an overview of the methods currently utilized for mechanistic investigations in hydrogen-bonding organocatalysis.
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50
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Affiliation(s)
- Takahiko Akiyama
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Keiji Mori
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
- Department
of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho Koganei, Tokyo 184-8588, Japan
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