Calix[4]arene-based rotaxane host systems for anion recognition

Chain Entropy Beats Hydrogen Bonds to Unfold and Thread Dialcohol Phosphates inside Cyanostar Macrocycles To Form [3]Pseudorotaxanes

The recognition of substituted phosphates underpins many processes including DNA binding, enantioselective catalysis, and recently template-directed rotaxane synthesis. Beyond ATP and a few commercial substrates, however, little is known about how substituents effect organophosphate recognition. Here, we examined alcohol substituents and their impact on recognition by cyanostar macrocycles. The organophosphates were disubstituted by alcohols of various chain lengths, dipropanol, dihexanol, and didecanol phosphate, each accessed using modular solid-phases syntheses. Based on the known size-selective binding of phosphates by π-stacked dimers of cyanostars, threaded [3]pseudorotaxanes were anticipated. While seen with butyl substituents, pseudorotaxane formation was disrupted by competitive OH···O- hydrogen bonding between both terminal hydroxyls and the anionic phosphate unit. Crystallography also showed formation of a backfolded propanol conformation resulting in an 8-membered ring and a perched cyanostar assembly. Motivated by established entropic penalties accompanying ring formation, we reinstated [3]pseudorotaxanes by extending the size of the substituent to hexanol and decanol. Chain entropy overcomes the enthalpically favored OH···O- contacts to favor random-coil conformations required for seamless, high-fidelity threading of dihexanol and didecanol phosphates inside cyanostars. These studies highlight how chain length and functional groups on phosphate's substituents can be powerful design tools to regulate binding and control assembly formation during phosphate recognition.

Controlled Sol-Gel and Diversiform Nanostructure Transitions by Photoresponsive Molecular Switching of Tetraphenylethene- and Azobenzene-Functionalized Organogelators

The implementation of stimuli-responsive materials with dynamically controllable features has long been an important objective that challenges chemists in the materials science field. We report here the synthesis and characterization of [2]rotaxanes (R1 and R1-b) with a molecular shuttle and photoresponsive properties. Axles T1 and T1-b were found to be highly efficient and versatile organogelators toward various nonpolar organic solvents, especially p-xylene, with critical gelation concentrations as low as 0.67 and 0.38 w/v %, respectively. The two molecular stations of switchable [2]rotaxanes (R1 and R1-b) can be revealed or concealed by t-butylcalix[4]arene macrocycle, thus inhibiting the gelation processes of the respective axles T1 and T1-b through the control of intermolecular hydrogen-bonding interactions. The sol-gel transition of axles T1 and T1-b could be achieved by the irradiation of UV-visible light, which interconverted between the extended and contracted forms. Interestingly, the morphologies of organogels in p-xylene, including flakes, nanobelts, fibers, and vesicles depending on the molecular structures of axles T1 and T1-b, were induced by UV-visible light irradiation. Further studies revealed that acid-base-controllable and reversible self-assembled nanostructures of these axle molecules were mainly constructed by the interplay of multi-noncovalent interactions, such as intermolecular π-π stacking, CH-π, and intermolecular hydrogen-bonding interactions. Surprisingly, our TPE molecular systems (R1, R1-b, T1, and T1-b) are nonemissive in their aggregated states, suggesting that not only fluorescence resonance energy transfer but also aggregation-caused quenching may have been functioning. Finally, the mechanical strength of these organogels in various solvents was monitored by rheological experiments.

Constructing bridged multifunctional calixarenes by intramolecular indole coupling

2,2′-Bisindole bridges can be easily created at (thia)calixarene cores providing the molecules with multiple functionalities for application in supramolecular chemistry.

Approved Anti-cancer Drugs Target Oncogenic Non-coding RNAs

Potential RNA drug targets for small molecules are found throughout the human transcriptome, yet small molecules known to elicit a pharmacological response by directly targeting RNA are limited to antibacterials. Herein, we describe AbsorbArray, a small molecule microarray-based approach that allows for unmodified compounds, including FDA-approved drugs, to be probed for binding to RNA motif libraries in a massively parallel format. Several drug classes bind RNA including kinase and topoisomerase inhibitors. The latter avidly bound the motif found in the Dicer site of oncogenic microRNA (miR)-21 and inhibited its processing both in vitro and in cells. The most potent compound de-repressed a downstream protein target and inhibited a miR-21-mediated invasive phenotype. The compound's activity was ablated upon overexpression of pre-miR-21. Target validation via chemical crosslinking and isolation by pull-down showed direct engagement of pre-miR-21 by the small molecule in cells, demonstrating that RNAs should indeed be considered druggable.

Complexation Between (O-Methyl)6 -2,6-Helic[6]arene and Tertiary Ammonium Salts: Acid/Base- or Chloride-Ion-Responsive Host-Guest Systems and Synthesis of [2]Rotaxane

Complexation between (O-methyl)₆ -2,6-helic[6]arene and a series of tertiary ammonium salts was described. It was found that the macrocycle could form stable complexes with the tested aromatic and aliphatic tertiary ammonium salts, which were evidenced by ¹ H NMR spectra, ESI mass spectra, and DFT calculations. In particular, the binding and release process of the guests in the complexes could be efficiently controlled by acid/base or chloride ions, which represents the first acid/base- and chloride-ion-responsive host-guest systems based on macrocyclic arenes and protonated tertiary ammonium salts. Moreover, the first 2,6-helic[6]arene-based [2]rotaxane was also synthesized from the condensation between the host-guest complex and isocyanate.

Microwave-Assisted Synthesis of Bidentate Chiral Unsymmetrical Urea Derivatives of P-tert-butylcalix[4]Arene and their Anion Recognition Properties

Four new derivatives of p-t-butylcalix[4]arene containing two (1,3-distal) chiral unsymmetrical urea moieties at the lower rim were synthesised in four steps. Their anion recognition properties toward MeCO2−, H2PO4−, NO3−, I−, Br−, Cl− were assessed by UV-Vis titration spectroscopy. All the receptors showed the strongest recognition ability for MeCO2−, one of them having an association constant of 3139 M-1. 1H NMR studies of this receptor complex confirmed its tight binding of MeCO2−.

Anion sensing by solution- and surface-assembled osmium(II) bipyridyl rotaxanes

We report the preparation of [2]rotaxanes containing an electrochemically and optically active osmium(II) bipyridyl macrocyclic component mechanically bonded with cationic pyridinium axles. Such interlocked host systems are demonstrated to recognise and sense anionic guest species as shown by (1)H NMR, luminescence and electrochemical studies. The rotaxanes can be surface assembled on to gold electrodes through anion templation under click copper(I)-catalysed Huisgen cycloaddition conditions to form rotaxane molecular films, which, after template removal, respond electrochemically and selectively to chloride.

Aggregation of p-Sulfonatocalixarene-Based Amphiphiles and Supra-Amphiphiles

p-Sulfonatocalixarenes are a special class of water soluble macrocyclic molecules made of 4-hydroxybenzenesulfonate units linked by methylene bridges. One of the main features of these compounds relies on their ability to form inclusion complexes with cationic and neutral species. This feature, together with their water solubility and apparent biological compatibility, had enabled them to emerge as one the most important host receptors in supramolecular chemistry. Attachment of hydrophobic alkyl chains to these compounds leads to the formation of macrocyclic host molecules with amphiphilic properties. Like other oligomeric surfactants, these compounds present improved performance with respect to their monomeric counterparts. In addition, they hold their recognition abilities and present several structural features that depend on the size of the macrocycle and on the length of the alkyl chain, such as preorganization, flexibility and adopted conformations, which make these molecules very interesting to study structure-aggregation relationships. Moreover, the recognition abilities of p-sulfonatocalixarenes enable them to be applied in the design of amphiphiles constructed from non-covalent, rather than covalent, bonds (supramolecular amphiphiles). In this review, we summarize the developments made on the design and synthesis of p-sulfonatocalixarenes-based surfactants, the characterization of their self-assembly properties and on how their structure affects these properties.