1
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Dumitrescu DG, Roche GH, Moreau JJE, Dautel OJ, van der Lee A. A positive to negative uniaxial thermal expansion crossover in an organic benzothienobenzothiophene structure. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2020; 76:661-673. [PMID: 32831285 DOI: 10.1107/s2052520620007702] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 06/05/2020] [Indexed: 06/11/2023]
Abstract
Compound 6,6'-([1]benzothieno[3,2-b][1]benzothiophene-2,7-diyl)bis(butan-1-ol) (BTBT-C4OH) displays a continuous type 0 first-order isosymmetric phase transition at 200 K which is accompanied by a continuous change of the thermal expansion along the b axis from positive to negative. The equivalent isotropic atomic displacement parameters for all non-hydrogen atoms as well as all the eigenvalues of the anisotropic atomic displacement tensor show discontinuous behavior at the phase transition. The eigenvalues of the translational tensor in a rigid-body description of the molecule are all discontinuous at the phase transition, but the librational eigenvalues are discontinuous only in their temperature derivative. BTBT-C4OH displays a similar type of quasi-supercritical phase transition as bis(hydroxyhexyl)[1]benzothieno[3,2-b][1]benzothiophene (BTBT-C6OH), despite the difference in molecular packing and the very large difference in thermal expansion magnitudes.
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Affiliation(s)
- Dan G Dumitrescu
- Elettra, Sincrotrone Trieste S.C.p.A., Strada Statale 14, km 163.5 in AREA Science Park, Basovizza, Trieste 34149, Italy
| | - Gilles H Roche
- ICGM, Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Joël J E Moreau
- ICGM, Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Olivier J Dautel
- ICGM, Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Arie van der Lee
- Institut Européen des Membranes, IEM - UMR 5635, ENSCM, CNRS, Université de Montpellier, Montpellier, France
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2
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Bull CL, Funnell NP, Ridley CJ, Pulham CR, Coster PL, Tellam JP, Marshall WG. Pressure-induced isosymmetric phase transition in biurea. CrystEngComm 2019. [DOI: 10.1039/c9ce01028a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An isosymmetric phase transition of biurea has been found in which the molecules appear to “snap” from one conformer to another upon compression.
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Affiliation(s)
- Craig L. Bull
- ISIS Neutron and Muon Facility
- Rutherford Appleton Laboratory
- Chilton
- U. K
| | | | | | - Colin R. Pulham
- EastCHEM School of Chemistry
- Joseph Black Building
- Edinburgh
- UK
| | - Paul L. Coster
- EastCHEM School of Chemistry
- Joseph Black Building
- Edinburgh
- UK
| | - James P. Tellam
- ISIS Neutron and Muon Facility
- Rutherford Appleton Laboratory
- Chilton
- U. K
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3
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Jin T, Zhang W. Geometric H/D isotope effect in a series of organic salts involving short O–H⋯O hydrogen bonds between carboxyl and carboxylate groups. CrystEngComm 2019. [DOI: 10.1039/c9ce00734b] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Noticeable elongations of donor–acceptor distances upon deuteration are confirmed in short O–H⋯O hydrogen bonds between carboxyl and carboxylate groups.
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Affiliation(s)
- Tong Jin
- Ordered Matter Science Research Center and Jiangsu Key Laboratory for Science and Applications of Molecular Ferroelectrics
- Southeast University
- Nanjing 211189
- China
| | - Wen Zhang
- Ordered Matter Science Research Center and Jiangsu Key Laboratory for Science and Applications of Molecular Ferroelectrics
- Southeast University
- Nanjing 211189
- China
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4
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Balevicius V, Maršalka A, Klimavičius V, Dagys L, Gdaniec M, Svoboda I, Fuess H. NMR and XRD Study of Hydrogen Bonding in Picolinic Acid N-Oxide in Crystalline State and Solutions: Media and Temperature Effects on Potential Energy Surface. J Phys Chem A 2018; 122:6894-6902. [DOI: 10.1021/acs.jpca.8b05421] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Vytautas Balevicius
- Institute of Chemical Physics, Vilnius University, Sauletekio av. 3, LT-10257 Vilnius, Lithuania
| | - Aru̅nas Maršalka
- Institute of Chemical Physics, Vilnius University, Sauletekio av. 3, LT-10257 Vilnius, Lithuania
| | - Vytautas Klimavičius
- Institute of Chemical Physics, Vilnius University, Sauletekio av. 3, LT-10257 Vilnius, Lithuania
- Eduard-Zintl Institute for Inorganic and Physical Chemistry, University of Technology Darmstadt, Alarich-Weiss-Strasse 8, D-64287 Darmstadt, Germany
| | - Laurynas Dagys
- Institute of Chemical Physics, Vilnius University, Sauletekio av. 3, LT-10257 Vilnius, Lithuania
| | - Maria Gdaniec
- Faculty of Chemistry, Adam Mickiewicz University, Umultowska ul. 89b, PL-61614 Poznań, Poland
| | - Ingrid Svoboda
- Institute for Materials Science, University of Technology Darmstadt, Alarich-Weiss-Strasse 2, D-64287 Darmstadt, Germany
| | - Hartmut Fuess
- Institute for Materials Science, University of Technology Darmstadt, Alarich-Weiss-Strasse 2, D-64287 Darmstadt, Germany
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5
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Kerr HE, Softley LK, Suresh K, Hodgkinson P, Evans IR. Structure and physicochemical characterization of a naproxen-picolinamide cocrystal. Acta Crystallogr C Struct Chem 2017; 73:168-175. [PMID: 28257010 PMCID: PMC5391861 DOI: 10.1107/s2053229616011980] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Accepted: 07/22/2016] [Indexed: 01/28/2023] Open
Abstract
Naproxen (NPX) is a nonsteroidal anti-inflammatory drug with pain- and fever-relieving properties, currently marketed in the sodium salt form to overcome solubility problems; however, alternative solutions for improving its solubility across all pH values are desirable. NPX is suitable for cocrystal formation, with hydrogen-bonding possibilities via the COOH group. The crystal structure is presented of a 1:1 cocrystal of NPX with picolinamide as a coformer [systematic name: (S)-2-(6-methoxynaphthalen-2-yl)propanoic acid-pyridine-2-carboxamide (1/1), C14H14O3·C6H6N2O]. The pharmaceutically relevant physical properties were investigated and the intrinsic dissolution rate was found to be essentially the same as that of commercial naproxen. An NMR crystallography approach was used to investigate the H-atom positions in the two crystallographically unique COOH-CONH hydrogen-bonded dimers. 1H solid-state NMR distinguished the two carboxyl protons, despite the very similar crystallographic environments. The nature of the hydrogen bonding was confirmed by solid-state NMR and density functional theory calculations.
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Affiliation(s)
- Hannah E. Kerr
- Department of Chemistry, Durham University, Lower Mountjoy, Stockton Road, Durham DH1 3LE, UK
| | - Lorna K. Softley
- Department of Chemistry, Durham University, Lower Mountjoy, Stockton Road, Durham DH1 3LE, UK
| | - Kuthuru Suresh
- School of Chemistry, University of Hyderabad, Hyderabad 500 046, India
| | - Paul Hodgkinson
- Department of Chemistry, Durham University, Lower Mountjoy, Stockton Road, Durham DH1 3LE, UK
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6
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Frantsuzov I, Ford SJ, Radosavljevic Evans I, Horsewill AJ, Trommsdorff HP, Johnson MR. Measurement of proton tunneling in short hydrogen bonds in single crystals of 3,5 pyridinedicarboxylic acid using nuclear magnetic resonance spectroscopy. PHYSICAL REVIEW LETTERS 2014; 113:018301. [PMID: 25032933 DOI: 10.1103/physrevlett.113.018301] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2013] [Indexed: 06/03/2023]
Abstract
In this Letter, we present NMR spin-lattice and relaxometry data for proton transfer in one of the shortest known N-H⋯O hydrogen bonds in a single crystal of 3,5 pyridinedicarboxylic acid (35PDCA). It is widely believed that proton transfer by quantum tunneling does not occur in short hydrogen bonds since the ground state energy level lies above the potential barrier, yet these data show a temperature independent, proton tunneling rate below 77 K and a clear deviation from classical dynamics below 91 K. This study therefore suggests that proton tunneling occurs in all hydrogen bonds at low temperature and the crossover temperature to classical hopping must be determined when evaluating whether proton tunneling persists at higher temperature, for example in enzyme catalysis under physiological conditions.
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Affiliation(s)
- I Frantsuzov
- School of Physics and Astronomy, University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - S J Ford
- Institute Laue Langevin, BP 156, 38042 Grenoble, France and Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | | | - A J Horsewill
- School of Physics and Astronomy, University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - H P Trommsdorff
- Institute Laue Langevin, BP 156, 38042 Grenoble, France and University of Grenoble 1/CNRS, LIPhy UMR 5588, BP 87, 38041 Grenoble, France
| | - M R Johnson
- Institute Laue Langevin, BP 156, 38042 Grenoble, France
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7
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Saha D, Ranjan R, Swain D, Narayana C, Row TNG. An unusual temperature induced isostructural phase transition in a scheelite, Li(0.5)Ce(0.5)MoO4. Dalton Trans 2013; 42:7672-8. [PMID: 23538608 DOI: 10.1039/c3dt33033h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High resolution synchrotron X-ray diffraction, dielectric and Raman scattering study of a scheelite compound Li0.5Ce0.5MoO4 (LCM) revealed that it transforms to a self similar structure above 400 °C. The thermally induced isostructural phase transition (IPT), a phenomenon which has rarely been reported in the literature, is preceded by partial softening of the zone centre phonons followed by their hardening above the IPT transition temperature. The high temperature isostructural phase, which exhibits expanded lattice parameters and cell volume, nucleates and grows in the low temperature matrix over a very wide temperature range. Both the phases show nearly identical thermal expansion suggesting similarities in symmetry, unaltered coordination environments around the atoms across the transition.
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Affiliation(s)
- Dipankar Saha
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560 012, India
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8
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Borissova AO, Lyssenko KA, Gurinov AA, Shenderovich IG. Energy Analysis of Competing Non-Covalent Interaction in 1:1 and 1:2 Adducts of Collidine with Benzoic Acids by Means of X-Ray Diffraction. ACTA ACUST UNITED AC 2013. [DOI: 10.1524/zpch.2013.0400] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The hydrogen bond pattern and the types of non-covalent interactions in the crystals of the 1:1 and 1:2 adducts of 2,4,6-trimethylpyridine and benzoic acids are studied using high-resolution X-ray diffraction. The geometries of the hydrogen bonds are estimated using a combined XRD/DFT approach that provides the geometrical parameters within the margin of error of neutron diffraction studies. The energies of the non-covalent interactions are estimated on the base of the experimental electron density distribution function. It is shown that the structures of the adducts are governed by the NOH and OHO hydrogen bonds. In turn, C-H...O contacts and stacking interactions define the packing of the adducts in the crystal. On the other hand, it is important to note that the latter interactions affect the competition of the former hydrogen bonds in some 1:2 adducts.
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Affiliation(s)
| | - Konstantin A. Lyssenko
- Russian Academy of Sciences, A.N. Nesmeyanov Institute of Organoelement Compoun, Moscow, Russische Föderation
| | - Andrey A. Gurinov
- St. Petersburg State University, Department of Physics, St. Petersburg, Russische Föderation
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9
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Ford SJ, McIntyre GJ, Johnson MR, Evans IR. Structure and dynamics studies of the short strong hydrogen bond in the 3,5-dinitrobenzoic acid–nicotinic acid molecular complex. CrystEngComm 2013. [DOI: 10.1039/c3ce40874d] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Ip BCK, Shenderovich IG, Tolstoy PM, Frydel J, Denisov GS, Buntkowsky G, Limbach HH. NMR Studies of Solid Pentachlorophenol-4-Methylpyridine Complexes Exhibiting Strong OHN Hydrogen Bonds: Geometric H/D Isotope Effects and Hydrogen Bond Coupling Cause Isotopic Polymorphism. J Phys Chem A 2012; 116:11370-87. [DOI: 10.1021/jp305863n] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Brenda C. K. Ip
- Institut für Chemie und
Biochemie, Freie Universität Berlin, Takustrasse 3, D-14195 Berlin,
Germany
| | - Ilya G. Shenderovich
- Institut für Chemie und
Biochemie, Freie Universität Berlin, Takustrasse 3, D-14195 Berlin,
Germany
- St. Petersburg State University, 198504 St. Petersburg, Russian Federation
| | - Peter M. Tolstoy
- Institut für Chemie und
Biochemie, Freie Universität Berlin, Takustrasse 3, D-14195 Berlin,
Germany
- St. Petersburg State University, 198504 St. Petersburg, Russian Federation
| | - Jaroslaw Frydel
- Institut für Chemie und
Biochemie, Freie Universität Berlin, Takustrasse 3, D-14195 Berlin,
Germany
| | - Gleb S. Denisov
- St. Petersburg State University, 198504 St. Petersburg, Russian Federation
| | - Gerd Buntkowsky
- Eduard-Zintl-Institut für
Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstr. 20, D-64287 Darmstadt, Germany
| | - Hans-Heinrich Limbach
- Institut für Chemie und
Biochemie, Freie Universität Berlin, Takustrasse 3, D-14195 Berlin,
Germany
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11
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Balevicius V, Aidas K, Svoboda I, Fuess H. Hydrogen Bonding in Pyridine N-Oxide/Acid Systems: Proton Transfer and Fine Details Revealed by FTIR, NMR, and X-ray Diffraction. J Phys Chem A 2012; 116:8753-61. [DOI: 10.1021/jp305446n] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Vytautas Balevicius
- Department of General Physics and
Spectroscopy, Vilnius University, Sauletekio
9-3, LT-10222 Vilnius, Lithuania
| | - Kęstutis Aidas
- Department of General Physics and
Spectroscopy, Vilnius University, Sauletekio
9-3, LT-10222 Vilnius, Lithuania
| | - Ingrid Svoboda
- Institute for Materials Science, Darmstadt University of Technology, Petersen Str. 23, D-64287 Darmstadt,
Germany
| | - Hartmut Fuess
- Institute for Materials Science, Darmstadt University of Technology, Petersen Str. 23, D-64287 Darmstadt,
Germany
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12
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Jones AOF, Lemée-Cailleau MH, Martins DMS, McIntyre GJ, Oswald IDH, Pulham CR, Spanswick CK, Thomas LH, Wilson CC. Temperature dependent solid-state proton migration in dimethylurea–oxalic acid complexes. Phys Chem Chem Phys 2012; 14:13273-83. [DOI: 10.1039/c2cp41782k] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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