1
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Cheibas C, Fincias N, Casaretto N, Garrec J, El Kaïm L. Passerini-Smiles Reaction of α-Ketophosphonates: Platform for Phospha-Brook/Smiles Embedded Cascades. Angew Chem Int Ed Engl 2022; 61:e202116249. [PMID: 35001479 DOI: 10.1002/anie.202116249] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Indexed: 11/07/2022]
Abstract
The Passerini-Smiles reactions of α-ketophosphonates with nitrophenols has been used as a platform to observe complex cascades involving multiple Smiles transfers coupled with phospha-Brook rearrangement. When using 4-nitrophenols a rare 1,3-Truce-Smiles rearrangement is observed leading to diarylacetamide derivatives. 2-Nitro-derivatives lead to a completely different reactivity pattern that may be explained by a nitro to nitroso conversion followed by a σ-π metathesis. All mechanistic assumptions are confirmed by DFT calculations performed on both families of adducts. The potential of this work has been further demonstrated by the use of N-aryl α-ketoamides as alternative starting materials for these cascades as well as the disclosure of new aza-Nazarov access to hydroxy-indolones.
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Affiliation(s)
- Cristina Cheibas
- Laboratoire de Synthèse Organique (LSO-UMR 76523), CNRS, Ecole Polytechnique, ENSTA-Paris, Institut Polytechnique de Paris, 828 Bd des Maréchaux, 91128, Palaiseau Cedex, France
| | - Nicolas Fincias
- Laboratoire de Synthèse Organique (LSO-UMR 76523), CNRS, Ecole Polytechnique, ENSTA-Paris, Institut Polytechnique de Paris, 828 Bd des Maréchaux, 91128, Palaiseau Cedex, France
| | - Nicolas Casaretto
- Laboratoire de Chimie Moléculaire (LCM-UMR 9168), CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91128, Palaiseau Cedex, France
| | - Julian Garrec
- Unité Chimie et Procédés (UCP), ENSTA-Paris, Institut Polytechnique de Paris, 91128, Palaiseau Cedex, France
| | - Laurent El Kaïm
- Laboratoire de Synthèse Organique (LSO-UMR 76523), CNRS, Ecole Polytechnique, ENSTA-Paris, Institut Polytechnique de Paris, 828 Bd des Maréchaux, 91128, Palaiseau Cedex, France
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2
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El Kaim L, Cheibas C, Fincias N, Casaretto N, Garrec J. Passerini‐Smiles Reaction of a‐Ketophosphonates: Platform for Phospha‐Brook/Smiles Embedded Cascades. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202116249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- laurent El Kaim
- Ecole Nationale Superieure de Techniques Avancees Chemistry department 828 Bd des mar�chaux 91120 Palaiseau FRANCE
| | - Cristina Cheibas
- Groupe ENSTA: Ecole Nationale Superieure de Techniques Avancees chemistry FRANCE
| | - Nicolas Fincias
- Groupe ENSTA: Ecole Nationale Superieure de Techniques Avancees chemistry FRANCE
| | | | - Julian Garrec
- Groupe ENSTA: Ecole Nationale Superieure de Techniques Avancees chemistry FRANCE
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3
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Adolfo Cuesta S, Cordova‐Sintjago T, Ramón Mora J. Sulfonylation of Five‐Membered Aromatic Heterocycles Compounds through Nucleophilic Aromatic Substitution: Concerted or Stepwise Mechanism? ChemistrySelect 2020. [DOI: 10.1002/slct.202000656] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sebastián Adolfo Cuesta
- Grupo de Química computacional y teórica (QCT-USFQ) Departamento de Ingeniería QuímicaUniversidad San Francisco de Quito Diego de Robles y Vía Interoceánica Quito 17-1200-841 Ecuador
| | | | - José Ramón Mora
- Grupo de Química computacional y teórica (QCT-USFQ) Departamento de Ingeniería QuímicaUniversidad San Francisco de Quito Diego de Robles y Vía Interoceánica Quito 17-1200-841 Ecuador
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4
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Facundo AA, Arévalo A, Fundora-Galano G, Flores-Álamo M, Orgaz E, García JJ. Hydrodefluorination of functionalized fluoroaromatics with triethylphosphine: a theoretical and experimental study. NEW J CHEM 2019. [DOI: 10.1039/c9nj00721k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new mechanistic proposal based in theoretical and experimental evidence invoking the participation of water is presented.
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Affiliation(s)
- Aldo A. Facundo
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
| | - Alma Arévalo
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
| | - Gabriela Fundora-Galano
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
| | - Marcos Flores-Álamo
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
| | - Emilio Orgaz
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
| | - Juventino J. García
- Facultad de Química
- Universidad Nacional Autónoma de México
- Circuito Interior
- Ciudad Universitaria
- México City 04510
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5
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Garçon M, Bakewell C, White AJP, Crimmin MR. Unravelling nucleophilic aromatic substitution pathways with bimetallic nucleophiles. Chem Commun (Camb) 2019; 55:1805-1808. [DOI: 10.1039/c8cc09701a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Reaction of nucleophiles containing polar (Fe–Mg) and apolar (Mg–Mg) bonds with 2-(pentafluorophenyl)pyridine are calculated to proceed by stepwise and concerted SNAr pathways respectively.
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Affiliation(s)
- Martí Garçon
- Department of Chemistry
- Imperial College London
- South Kensington
- UK
| | - Clare Bakewell
- Department of Chemistry
- Imperial College London
- South Kensington
- UK
| | | | - Mark R. Crimmin
- Department of Chemistry
- Imperial College London
- South Kensington
- UK
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6
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Neumann CN, Ritter T. Facile C-F Bond Formation through a Concerted Nucleophilic Aromatic Substitution Mediated by the PhenoFluor Reagent. Acc Chem Res 2017; 50:2822-2833. [PMID: 29120599 DOI: 10.1021/acs.accounts.7b00413] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Late-stage fluorination reactions aim to reduce the synthetic limitations of conventional organofluorine chemistry with respect to substrate scope and functional group tolerance. C-F bond formation is commonly thermodynamically favorable but almost universally associated with high kinetic barriers. Apart from PhenoFluor chemistry, most modern aromatic fluorination methods reported to date rely on the use of transition metal catalysts, with C-F bonds often formed through reductive elimination. Reductive elimination chemistry to make C-X bonds becomes increasingly challenging when moving to higher atomic numbers in the periodic table from C-C to C-F, in part because of higher metal-X bond dissociation energies. The formation of C-C, C-N, and C-O bonds via reductive elimination has become routine in the 20th century, but it took until the 21st century to develop complexes that could afford general C-F bond formation. The availability of such complexes enabled the substrate scope of modern fluorination chemistry to exceed that of conventional fluorination. PhenoFluor chemistry departs from conventional reaction mechanisms for aromatic fluorination chemistry. Instead, we have revealed a concerted nucleophilic aromatic substitution reaction (CSNAr) for PhenoFluor that proceeds through a single neutral four-membered transition state. Conceptually, PhenoFluor chemistry is therefore distinct from conventional SNAr chemistry, which typically proceeds through a two-barrier process with Meisenheimer complexes as reaction intermediates. As a consequence, PhenoFluor chemistry has a larger substrate scope than conventional SNAr chemistry and can be performed on arenes as electron-rich as anilines. Moreover, PhenoFluor chemistry is tolerant of protic functional groups, which sets it apart from modern metal-mediated processes. Primary and secondary amines, alcohols, thiols, and phenols are often not tolerated under metal-catalyzed late-stage fluorination reactions because C-N and C-O reductive elimination can have lower activation barriers than C-F reductive elimination. The mechanism by which PhenoFluor chemistry forms C-F bonds not only rationalizes the substrate scope and functional group tolerance but also informs the side-product profile. Fluorinated isomers are not observed because the four-membered transition state necessitates ipso substitution. In addition, no reduced product, e.g., H instead of F incorporation, as is often observed with metal-mediated methods, has ever been observed with PhenoFluor. PhenoFluor chemistry can be used to deoxyfluorinate both phenols and alcohols. PhenoFluor is an expensive reagent that must be used stoichiometrically and therefore cannot replace cost-efficient methods to make simple fluorinated molecules on a large scale. However, PhenoFluor is often successful when other fluorination methods fail. The synthesis of 18F-labeled molecules for positron emission tomography (PET) is one application of modern fluorination chemistry for which material throughput is not an issue because of the small quantities of PET tracers used in imaging (typically nanomoles). The high emphasis on functional group tolerance, side-product profiles, and reliability combined with less stringent cost requirements render PhenoFluor-based deoxyfluorination with 18F promising for human PET imaging.
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Affiliation(s)
- Constanze N. Neumann
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
| | - Tobias Ritter
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
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7
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Kiriazis A, Aumüller IB, Arnaudova R, Brito V, Rüffer T, Lang H, Silvestre SM, Koskinen PJ, Yli-Kauhaluoma J. Nucleophilic Substitution of Hydrogen Facilitated by Quinone Methide Moieties in Benzo[cd]azulen-3-ones. Org Lett 2017; 19:2030-2033. [PMID: 28379712 DOI: 10.1021/acs.orglett.7b00588] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The built-in o- and p-QM (QM = quinone methide) moieties in benzo[cd]azulen-3-ones account for an easy switch between the bridged 10π- and 6π-aromatic systems in organic synthesis. We report conjugate additions, oxidative nucleophilic substitutions of hydrogen, and reversible Michael additions under very mild conditions. In the presence of thiol nucleophiles, the protonated σH-adducts could be isolated and characterized. The typical preference for either the o- or p-QM moiety led to high regioselectivity. Furthermore, the inhibitory potency of the novel benzo[cd]azulenes against the human Pim-1 kinase was evaluated.
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Affiliation(s)
- Alexandros Kiriazis
- Drug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki , P.O. Box 56, Viikinkaari 5 E, FI-00014 Helsinki, Finland
| | - Ingo B Aumüller
- Drug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki , P.O. Box 56, Viikinkaari 5 E, FI-00014 Helsinki, Finland
| | - Ralica Arnaudova
- Drug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki , P.O. Box 56, Viikinkaari 5 E, FI-00014 Helsinki, Finland.,Department of Biology, University of Turku , Vesilinnantie 5, FI-20014 Turku, Finland
| | - Vanessa Brito
- Health Sciences Research Centre, University of Beira Interior , Av. Infante D. Henrique, 6200-506 Covilhã, Portugal
| | - Tobias Rüffer
- Technische Universität Chemnitz, Fakultät für Naturwissenschaften, Institut für Chemie , D-09107 Chemnitz, Germany
| | - Heinrich Lang
- Technische Universität Chemnitz, Fakultät für Naturwissenschaften, Institut für Chemie , D-09107 Chemnitz, Germany
| | - Samuel M Silvestre
- Health Sciences Research Centre, University of Beira Interior , Av. Infante D. Henrique, 6200-506 Covilhã, Portugal.,Centre for Neuroscience and Cell Biology , 3004-504 Coimbra, Portugal
| | - Päivi J Koskinen
- Department of Biology, University of Turku , Vesilinnantie 5, FI-20014 Turku, Finland
| | - Jari Yli-Kauhaluoma
- Drug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki , P.O. Box 56, Viikinkaari 5 E, FI-00014 Helsinki, Finland
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8
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Calfumán K, Gallardo-Fuentes S, Contreras R, Tapia RA, Campodónico PR. Mechanism for the SNAr reaction of atrazine with endogenous thiols: experimental and theoretical study. NEW J CHEM 2017. [DOI: 10.1039/c7nj02708g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The mechanism for the SNAr reaction of atrazine with endogenous thiols: a stepwise or concerted process?
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Affiliation(s)
- K. Calfumán
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago
- Chile
| | - S. Gallardo-Fuentes
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago
- Chile
| | - R. Contreras
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago
- Chile
| | - R. A. Tapia
- Departamento de Orgánica
- Facultad de Química
- Pontificia Universidad Católica de Chile
- Santiago 6094411
- Chile
| | - P. R. Campodónico
- Centro de Química Médica
- Facultad de Medicina
- Clínica Alemana Universidad del Desarrollo
- Santiago
- Chile
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9
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Mason KM, Meyers MS, Fox AM, Luesse SB. Application of heterocyclic aldehydes as components in Ugi-Smiles couplings. Beilstein J Org Chem 2016; 12:2032-2037. [PMID: 27829908 PMCID: PMC5082724 DOI: 10.3762/bjoc.12.191] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 08/24/2016] [Indexed: 11/23/2022] Open
Abstract
Efficient one-pot Ugi–Smiles couplings are reported for the use of furyl-substituted aldehyde components. In the presence of these heterocyclic aldehydes, reactions tolerated variations in amine components and led to either isolated N-arylamide Ugi–Smiles adducts or N-arylepoxyisoindolines, products of tandem Ugi–Smiles Diels–Alder cyclizations, in moderate yields. A thienyl-substituted aldehyde was also a competent component for Ugi–Smiles adduct formation.
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Affiliation(s)
- Katelynn M Mason
- Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, USA
| | - Michael S Meyers
- Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, USA
| | - Abbie M Fox
- Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, USA
| | - Sarah B Luesse
- Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, USA
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10
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Martinand-Lurin E, Dos Santos A, Robineau E, Retailleau P, Dauban P, Grimaud L, El Kaïm L. Optimized Conditions for Passerini-Smiles Reactions and Applications to Benzoxazinone Syntheses. Molecules 2016; 21:molecules21091257. [PMID: 27657034 PMCID: PMC6273966 DOI: 10.3390/molecules21091257] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Revised: 09/13/2016] [Accepted: 09/13/2016] [Indexed: 11/16/2022] Open
Abstract
Initial conditions disclosed for the Passerini-Smiles reaction are associated with a lack of efficiency that has prevented chemists from using it since its discovery. We wish to report herein our thorough study in the development of new experimental conditions for this coupling between electron-poor phenols, isocyanides, and carbonyl derivatives. These new conditions have been applied to several synthetic strategies towards benzoxazinones.
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Affiliation(s)
- Elodie Martinand-Lurin
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette CEDEX, France.
- 1 Ecole Normale Supérieure, PSL Research University, UPMC Univ. Paris 06, CNRS, Département de Chimie, PASTEUR, 24, rue Lhomond, 75005 Paris, France; 2 Sorbonne Universités, UPMC Univ. Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France.
| | - Aurélie Dos Santos
- Laboratoire de Synthèse Organique, CNRS, Ecole Polytechnique, ENSTA ParisTech-UMR 7652, Université Paris-Saclay, 91128 Palaiseau, France.
| | - Emmanuelle Robineau
- 1 Ecole Normale Supérieure, PSL Research University, UPMC Univ. Paris 06, CNRS, Département de Chimie, PASTEUR, 24, rue Lhomond, 75005 Paris, France; 2 Sorbonne Universités, UPMC Univ. Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France.
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette CEDEX, France.
| | - Philippe Dauban
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette CEDEX, France.
| | - Laurence Grimaud
- 1 Ecole Normale Supérieure, PSL Research University, UPMC Univ. Paris 06, CNRS, Département de Chimie, PASTEUR, 24, rue Lhomond, 75005 Paris, France; 2 Sorbonne Universités, UPMC Univ. Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France.
| | - Laurent El Kaïm
- Laboratoire de Synthèse Organique, CNRS, Ecole Polytechnique, ENSTA ParisTech-UMR 7652, Université Paris-Saclay, 91128 Palaiseau, France.
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11
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Concerted nucleophilic aromatic substitution with (19)F(-) and (18)F(-). Nature 2016; 534:369-73. [PMID: 27281221 PMCID: PMC4911285 DOI: 10.1038/nature17667] [Citation(s) in RCA: 189] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2015] [Accepted: 03/10/2016] [Indexed: 12/17/2022]
Abstract
Nucleophilic aromatic substitution (SNAr) is widely used by organic chemists to functionalize aromatic molecules, and it is the most commonly used method to generate arenes that contain (18)F for use in positron-emission tomography (PET) imaging. A wide range of nucleophiles exhibit SNAr reactivity, and the operational simplicity of the reaction means that the transformation can be conducted reliably and on large scales. During SNAr, attack of a nucleophile at a carbon atom bearing a 'leaving group' leads to a negatively charged intermediate called a Meisenheimer complex. Only arenes with electron-withdrawing substituents can sufficiently stabilize the resulting build-up of negative charge during Meisenheimer complex formation, limiting the scope of SNAr reactions: the most common SNAr substrates contain strong π-acceptors in the ortho and/or para position(s). Here we present an unusual concerted nucleophilic aromatic substitution reaction (CSNAr) that is not limited to electron-poor arenes, because it does not proceed via a Meisenheimer intermediate. We show a phenol deoxyfluorination reaction for which CSNAr is favoured over a stepwise displacement. Mechanistic insights enabled us to develop a functional-group-tolerant (18)F-deoxyfluorination reaction of phenols, which can be used to synthesize (18)F-PET probes. Selective (18)F introduction, without the need for the common, but cumbersome, azeotropic drying of (18)F, can now be accomplished from phenols as starting materials, and provides access to (18)F-labelled compounds not accessible through conventional chemistry.
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12
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Bode ML, Gravestock D, Rousseau AL. Synthesis, Reactions and Uses of Isocyanides in Organic Synthesis. An Update. ORG PREP PROCED INT 2016. [DOI: 10.1080/00304948.2016.1138072] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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13
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Moors SLC, Brigou B, Hertsen D, Pinter B, Geerlings P, Van Speybroeck V, Catak S, De Proft F. Influence of Solvation and Dynamics on the Mechanism and Kinetics of Nucleophilic Aromatic Substitution Reactions in Liquid Ammonia. J Org Chem 2016; 81:1635-44. [PMID: 26800020 DOI: 10.1021/acs.joc.5b02794] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The role of the solvent and the influence of dynamics on the kinetics and mechanism of the SNAr reaction of several halonitrobenzenes in liquid ammonia, using both static calculations and dynamic ab initio molecular dynamics simulations, are investigated. A combination of metadynamics and committor analysis methods reveals how this reaction can change from a concerted, one-step mechanism in gas phase to a stepwise pathway, involving a metastable Meisenheimer complex, in liquid ammonia. This clearly establishes, among others, the important role of the solvent and highlights the fact that accurately treating solvation is of crucial importance to correctly unravel the reaction mechanism. It is indeed shown that H-bond formation of the reacting NH3 with the solvent drastically reduces the barrier of NH3 addition. The halide elimination step, however, is greatly facilitated by proton transfer from the reacting NH3 to the solvent. Furthermore, the free energy surface strongly depends on the halide substituent and the number of electron-withdrawing nitro substituents.
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Affiliation(s)
- Samuel L C Moors
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB) , Pleinlaan 2, 1050 Elsene, Brussels, Belgium
| | - Ben Brigou
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB) , Pleinlaan 2, 1050 Elsene, Brussels, Belgium
| | - Dietmar Hertsen
- Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Balazs Pinter
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB) , Pleinlaan 2, 1050 Elsene, Brussels, Belgium
| | - Paul Geerlings
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB) , Pleinlaan 2, 1050 Elsene, Brussels, Belgium
| | - Veronique Van Speybroeck
- Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Saron Catak
- Department of Chemistry, Bogazici University , Bebek 34342, Istanbul, Turkey
| | - Frank De Proft
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB) , Pleinlaan 2, 1050 Elsene, Brussels, Belgium
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14
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Gallardo-Fuentes S, Contreras R, Ormazábal-Toledo R. Origins of the ANRORC reactivity in nitroimidazole derivatives. RSC Adv 2016. [DOI: 10.1039/c6ra00199h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Highlighting the key role of proton transfer along the PES: unraveling the mechanism of ANRORC reactions in 1,4-dinitro-1H-imidazole derivatives.
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Affiliation(s)
| | - Renato Contreras
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago
- Chile
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15
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Qian W, Wang H, Bartberger MD. Accelerating effect of triazolyl and related heteroaryl substituents on SNAr reactions: evidence of hydrogen-bond stabilized transition states. J Am Chem Soc 2015; 137:12261-8. [PMID: 26321078 DOI: 10.1021/jacs.5b06189] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The remarkable accelerating effect of 1,2,3-triazolyl substituents on SNAr reactions has been investigated through systematic experiments and density functional theory calculations. The lone pair electrons of an ortho-triazolo substituent play a key role in lowering the activation energy for nucleophilic addition via formation of a preferential hydrogen bond with the amine nucleophile at the transition state for addition. In an extension of this finding, a series of related heteroaryl groups with similar electron pair donor properties have also been found to facilitate SNAr reactions. The experimentally determined solvent effect provides further support for this rationale, which was utilized to achieve an ortho-selective substitution on a difluoroarene substrate.
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Affiliation(s)
- Wenyuan Qian
- Department of Medicinal Chemistry and ‡Department of Molecular Structure, Therapeutic Discovery, Amgen Inc. , One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
| | - Hao Wang
- Department of Medicinal Chemistry and ‡Department of Molecular Structure, Therapeutic Discovery, Amgen Inc. , One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
| | - Michael D Bartberger
- Department of Medicinal Chemistry and ‡Department of Molecular Structure, Therapeutic Discovery, Amgen Inc. , One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
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16
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Chung LW, Sameera WMC, Ramozzi R, Page AJ, Hatanaka M, Petrova GP, Harris TV, Li X, Ke Z, Liu F, Li HB, Ding L, Morokuma K. The ONIOM Method and Its Applications. Chem Rev 2015; 115:5678-796. [PMID: 25853797 DOI: 10.1021/cr5004419] [Citation(s) in RCA: 738] [Impact Index Per Article: 82.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Lung Wa Chung
- †Department of Chemistry, South University of Science and Technology of China, Shenzhen 518055, China
| | - W M C Sameera
- ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
| | - Romain Ramozzi
- ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
| | - Alister J Page
- §Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan 2308, Australia
| | - Miho Hatanaka
- ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
| | - Galina P Petrova
- ∥Faculty of Chemistry and Pharmacy, University of Sofia, Bulgaria Boulevard James Bourchier 1, 1164 Sofia, Bulgaria
| | - Travis V Harris
- ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan.,⊥Department of Chemistry, State University of New York at Oswego, Oswego, New York 13126, United States
| | - Xin Li
- #State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Zhuofeng Ke
- ∇School of Chemistry and Chemical Engineering, Sun Yat-sen University, Guangzhou 510275, China
| | - Fengyi Liu
- ○Key Laboratory of Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, Shaanxi 710119, China
| | - Hai-Bei Li
- ■School of Ocean, Shandong University, Weihai 264209, China
| | - Lina Ding
- ▲School of Pharmaceutical Sciences, Zhengzhou University, 100 Kexue Avenue, Zhengzhou, Henan 450001, China
| | - Keiji Morokuma
- ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan
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17
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San LK, Bukovsky EV, Larson BW, Whitaker JB, Deng SHM, Kopidakis N, Rumbles G, Popov AA, Chen YS, Wang XB, Boltalina OV, Strauss SH. A faux hawk fullerene with PCBM-like properties. Chem Sci 2015; 6:1801-1815. [PMID: 29142669 PMCID: PMC5653957 DOI: 10.1039/c4sc02970d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Accepted: 12/13/2014] [Indexed: 01/27/2023] Open
Abstract
Reaction of C60, C6F5CF2I, and SnH(n-Bu)3 produced, among other unidentified fullerene derivatives, the two new compounds 1,9-C60(CF2C6F5)H (1) and 1,9-C60(cyclo-CF2(2-C6F4)) (2). The highest isolated yield of 1 was 35% based on C60. Depending on the reaction conditions, the relative amounts of 1 and 2 generated in situ were as high as 85% and 71%, respectively, based on HPLC peak integration and summing over all fullerene species present other than unreacted C60. Compound 1 is thermally stable in 1,2-dichlorobenzene (oDCB) at 160 °C but was rapidly converted to 2 upon addition of Sn2(n-Bu)6 at this temperature. In contrast, complete conversion of 1 to 2 occurred within minutes, or hours, at 25 °C in 90/10 (v/v) PhCN/C6D6 by addition of stoichiometric, or sub-stoichiometric, amounts of proton sponge (PS) or cobaltocene (CoCp2). DFT calculations indicate that when 1 is deprotonated, the anion C60(CF2C6F5)- can undergo facile intramolecular SNAr annulation to form 2 with concomitant loss of F-. To our knowledge this is the first observation of a fullerene-cage carbanion acting as an SNAr nucleophile towards an aromatic C-F bond. The gas-phase electron affinity (EA) of 2 was determined to be 2.805(10) eV by low-temperature PES, higher by 0.12(1) eV than the EA of C60 and higher by 0.18(1) eV than the EA of phenyl-C61-butyric acid methyl ester (PCBM). In contrast, the relative E1/2(0/-) values of 2 and C60, -0.01(1) and 0.00(1) V, respectively, are virtually the same (on this scale, and under the same conditions, the E1/2(0/-) of PCBM is -0.09 V). Time-resolved microwave conductivity charge-carrier yield × mobility values for organic photovoltaic active-layer-type blends of 2 and poly-3-hexylthiophene (P3HT) were comparable to those for equimolar blends of PCBM and P3HT. The structure of solvent-free crystals of 2 was determined by single-crystal X-ray diffraction. The number of nearest-neighbor fullerene-fullerene interactions with centroid···centroid (⊙···⊙) distances of ≤10.34 Å is significantly greater, and the average ⊙···⊙ distance is shorter, for 2 (10 nearest neighbors; ave. ⊙···⊙ distance = 10.09 Å) than for solvent-free crystals of PCBM (7 nearest neighbors; ave. ⊙···⊙ distance = 10.17 Å). Finally, the thermal stability of 2 was found to be far greater than that of PCBM.
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Affiliation(s)
- Long K San
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
| | - Eric V Bukovsky
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
| | - Bryon W Larson
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
- National Renewable Energy Laboratory , Golden , CO 80401 , USA . ;
| | - James B Whitaker
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
| | - S H M Deng
- Physical Sciences Division , Pacific Northwest National Laboratory , MS K8-88, P.O. Box 999 , Richland , WA 99352 , USA .
| | - Nikos Kopidakis
- National Renewable Energy Laboratory , Golden , CO 80401 , USA . ;
| | - Garry Rumbles
- National Renewable Energy Laboratory , Golden , CO 80401 , USA . ;
| | - Alexey A Popov
- Leibniz Institute for Solid State and Materials Research , 01069 Dresden , Germany .
| | - Yu-Sheng Chen
- ChemMatCARS Beamline , University of Chicago Advanced Photon Source , Argonne , IL 60439 , USA .
| | - Xue-Bin Wang
- Physical Sciences Division , Pacific Northwest National Laboratory , MS K8-88, P.O. Box 999 , Richland , WA 99352 , USA .
| | - Olga V Boltalina
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
| | - Steven H Strauss
- Department of Chemistry , Colorado State University , Fort Collins , CO 80523 , USA . ;
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18
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Gallardo-Fuentes S, Contreras R. Mechanistic insights into the ANRORC-like rearrangement between methylhydrazine and 1,2,4-oxadiazole derivatives. Org Biomol Chem 2015; 13:9439-44. [DOI: 10.1039/c5ob01300c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first in-depth theoretical study devoted to elucidate the mechanism of the ANRORC reaction between 1,2,4-oxadiazole derivatives and methylhydrazine is described.
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Affiliation(s)
| | - Renato Contreras
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago
- Chile
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19
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El Kaïm L, Grimaud L. The Ugi-Smiles and Passerini-Smiles Couplings: A Story About Phenols in Isocyanide-Based Multicomponent Reactions. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402783] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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20
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Martinand-Lurin E, El Kaïm L, Grimaud L. Benzoxazinone synthesis via Passerini–Smiles couplings. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.07.088] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Ramozzi R, Chéron N, El Kaïm L, Grimaud L, Fleurat-Lessard P. Predicting new Ugi-smiles couplings: a combined experimental and theoretical study. Chemistry 2014; 20:9094-9. [PMID: 24903608 DOI: 10.1002/chem.201400336] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Indexed: 01/31/2023]
Abstract
Following our previous mechanistic studies of multicomponent Ugi-type reactions, theoretical calculations have been performed to predict the efficiency of new substrates in Ugi-Smiles couplings. First, as predicted, 2,4,6-trichlorophenol experimentally gave the corresponding aryl-imidate. Theoretical predictions of nitrosophenols as good acidic partners were then successfully confirmed by experiments. In the latter case, the reaction offers a new access to benzimidazoles.
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Affiliation(s)
- Romain Ramozzi
- Laboratoire de Chimie, UMR 5182, Ecole Normale Supérieure de Lyon, Université de Lyon, 46 allée d'Italie F-69364 Lyon Cedex 07 (France); Laboratoire de Chimie et Procédés, DCSO, UMR 7652, Ecole Nationale Supérieure de Techniques Avancées ParisTech, 828, Boulevard des Maréchaux, F-91762 Palaiseau Cedex (France); Département de Chimie, UMR 8640, Ecole Normale Supérieure, 24 rue Lhomond, 75231 Paris Cedex 05 (France); Present address: Fukui Institute for Fundamental Chemistry, Kyoto University, Takano-Nishihiraki-cho 34-4, Sakyou-ku, Kyoto 606-8103 (Japan)
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22
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Gallardo-Fuentes S, Tapia RA, Contreras R, Campodónico PR. Site activation effects promoted by intramolecular hydrogen bond interactions in SNAr reactions. RSC Adv 2014. [DOI: 10.1039/c4ra04725g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The nucleophilic aromatic substitution reaction of benzohydrazide derivatives towards 2-chloro-5-nitropyrimidine is used as model system to experimentally and theoretically show that intramolecular hydrogen-bond formation operates as a perturbation that elicits a dual response at the reaction center of the transition state (TS) structure.
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Affiliation(s)
| | - Ricardo A. Tapia
- Facultad de Química
- Pontificia Universidad Católica de Chile
- Santiago 6094411, Chile
| | - Renato Contreras
- Departamento de Química
- Facultad de Ciencias
- Universidad de Chile
- Santiago, Chile
| | - Paola R. Campodónico
- Centro de Química Médica
- Facultad de Medicina
- Clínica Alemana Universidad del Desarrollo
- Santiago, Chile
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23
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Chéron N, Ramozzi R, El Kaïm L, Grimaud L, Fleurat-Lessard P. Substituent Effects in Ugi–Smiles Reactions. J Phys Chem A 2013; 117:8035-42. [DOI: 10.1021/jp4052227] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicolas Chéron
- Ecole Normale Supérieure
de Lyon, Laboratoire de Chimie, Université de Lyon, UMR 5182, 46 allée d’Italie, F-69364
Lyon Cedex 07, France
- Laboratoire
Chimie et Procédés,
DCSO, UMR 7652, Ecole Nationale Supérieure de Techniques Avancées, 828 Bd des Maréchaux,
F-91762 Palaiseau Cedex, France
| | - Romain Ramozzi
- Ecole Normale Supérieure
de Lyon, Laboratoire de Chimie, Université de Lyon, UMR 5182, 46 allée d’Italie, F-69364
Lyon Cedex 07, France
- Laboratoire
Chimie et Procédés,
DCSO, UMR 7652, Ecole Nationale Supérieure de Techniques Avancées, 828 Bd des Maréchaux,
F-91762 Palaiseau Cedex, France
| | - Laurent El Kaïm
- Laboratoire
Chimie et Procédés,
DCSO, UMR 7652, Ecole Nationale Supérieure de Techniques Avancées, 828 Bd des Maréchaux,
F-91762 Palaiseau Cedex, France
| | - Laurence Grimaud
- Département de Chimie, Ecole Normale Supérieure, UMR 8640, 24 rue Lhomond,
75231 Paris Cedex 05, France
| | - Paul Fleurat-Lessard
- Ecole Normale Supérieure
de Lyon, Laboratoire de Chimie, Université de Lyon, UMR 5182, 46 allée d’Italie, F-69364
Lyon Cedex 07, France
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24
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Ormazábal-Toledo R, Contreras R, Campodónico PR. Reactivity indices profile: a companion tool of the potential energy surface for the analysis of reaction mechanisms. Nucleophilic aromatic substitution reactions as test case. J Org Chem 2013; 78:1091-7. [PMID: 23289603 DOI: 10.1021/jo3025048] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We herein report on the usefulness of the reactivity indices profiles along a reaction coordinate. The model is tested to fully describe the reaction mechanism of the title reactions. Group nucleophilicity and electrophilicity profiles help describe the bond-breaking/bond-formation processes and the intramolecular electron density reorganization. The reactivity indices' profile analysis is consistently complemented with hydrogen bonding (HB) effects along the reaction coordinate: the final outcome of the reaction is determined by the stage at which the HB complex can be formed. Transition-state structures located for six reactions studied, including the charged nucleophile thiocyanate, show that the main stabilizing interaction is that formed between the hydrogen atom of the nucleophile and the o-NO(2) group. This result discards the role of HB interaction between the nucleophile and the leaving group previously proposed in the literature.
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Affiliation(s)
- Rodrigo Ormazábal-Toledo
- Departamento de Química, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile.
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25
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Ormazábal-Toledo R, Contreras R, Tapia RA, Campodónico PR. Specific nucleophile–electrophile interactions in nucleophilic aromatic substitutions. Org Biomol Chem 2013; 11:2302-9. [DOI: 10.1039/c3ob27450k] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Chéron N, Ramozzi R, Kaïm LE, Grimaud L, Fleurat-Lessard P. Challenging 50 Years of Established Views on Ugi Reaction: A Theoretical Approach. J Org Chem 2012; 77:1361-6. [DOI: 10.1021/jo2021554] [Citation(s) in RCA: 103] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Nicolas Chéron
- Université de Lyon, Ecole Normale Supérieure de Lyon, Laboratoire
de Chimie, UMR 5182, 46, allée d’Italie, F-69364 Lyon
Cedex 07, France
- Laboratoire
Chimie et Procédés,
UMR 7652 CNRS-DCSO-ENSTA, Ecole Nationale Supérieure de Techniques Avancées, 32, Bd Victor, F-75739
Paris Cedex 15, France
| | - Romain Ramozzi
- Université de Lyon, Ecole Normale Supérieure de Lyon, Laboratoire
de Chimie, UMR 5182, 46, allée d’Italie, F-69364 Lyon
Cedex 07, France
- Laboratoire
Chimie et Procédés,
UMR 7652 CNRS-DCSO-ENSTA, Ecole Nationale Supérieure de Techniques Avancées, 32, Bd Victor, F-75739
Paris Cedex 15, France
| | - Laurent El Kaïm
- Laboratoire
Chimie et Procédés,
UMR 7652 CNRS-DCSO-ENSTA, Ecole Nationale Supérieure de Techniques Avancées, 32, Bd Victor, F-75739
Paris Cedex 15, France
| | - Laurence Grimaud
- Laboratoire
Chimie et Procédés,
UMR 7652 CNRS-DCSO-ENSTA, Ecole Nationale Supérieure de Techniques Avancées, 32, Bd Victor, F-75739
Paris Cedex 15, France
| | - Paul Fleurat-Lessard
- Université de Lyon, Ecole Normale Supérieure de Lyon, Laboratoire
de Chimie, UMR 5182, 46, allée d’Italie, F-69364 Lyon
Cedex 07, France
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27
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Chéron N, Jacquemin D, Fleurat-Lessard P. A qualitative failure of B3LYP for textbook organic reactions. Phys Chem Chem Phys 2012; 14:7170-5. [DOI: 10.1039/c2cp40438a] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Ramozzi R, Chéron N, Braïda B, Hiberty PC, Fleurat-Lessard P. A valence bond view of isocyanides' electronic structure. NEW J CHEM 2012. [DOI: 10.1039/c2nj40050b] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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El Kaïm L, Grimaud L, Pravin P. Ugi–Smiles Couplings of 4-Substituted Pyridine Derivatives: A Fast Access to Chloroquine Analogues. Org Lett 2011; 14:476-8. [DOI: 10.1021/ol202974w] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Laurent El Kaïm
- DCSO-UMR 7652: CNRS-ENSTA-Ecole Polytechnique, Laboratoire Chimie et Procédés, Ecole Nationale Supérieure de Techniques Avancées, 32 Bd Victor, 75739 Paris Cedex 15, France
| | - Laurence Grimaud
- DCSO-UMR 7652: CNRS-ENSTA-Ecole Polytechnique, Laboratoire Chimie et Procédés, Ecole Nationale Supérieure de Techniques Avancées, 32 Bd Victor, 75739 Paris Cedex 15, France
| | - Patil Pravin
- DCSO-UMR 7652: CNRS-ENSTA-Ecole Polytechnique, Laboratoire Chimie et Procédés, Ecole Nationale Supérieure de Techniques Avancées, 32 Bd Victor, 75739 Paris Cedex 15, France
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