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Hughes SM, Aykanat A, Pierini NG, Paiva WA, Weeks AA, Edwards AS, Durant OC, Oldenhuis NJ. DNA-Intercalating Supramolecular Hydrogels for Tunable Thermal and Viscoelastic Properties. Angew Chem Int Ed Engl 2024; 63:e202411115. [PMID: 39102520 DOI: 10.1002/anie.202411115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/23/2024] [Accepted: 08/05/2024] [Indexed: 08/07/2024]
Abstract
Polymeric supramolecular hydrogels (PSHs) leverage the thermodynamic and kinetic properties of non-covalent interactions between polymer chains to govern their structural characteristics. As these materials are formed via endothermic or exothermic equilibria, their thermal response is challenging to control without drastically changing the nature of the chemistry used to join them. In this study, we introduce a novel class of PSHs utilizing the intercalation of double-stranded DNA (dsDNA) as the primary dynamic non-covalent interaction. The resulting dsDNA intercalating supramolecular hydrogels (DISHs) can be tuned to exhibit both endothermically or exothermically driven binding through strategic selection of intercalators. Bifunctional polyethylene glycol (MW~2000 Da) capped with intercalators of varying hydrophobicity, charge, and size (acridine, psoralen, thiazole orange, and phenanthridine) produced DISHs with comparable moduli (500-1000 Pa), but unique thermal viscoelastic responses. Notably, acridine-based cross-linkers displayed invariant and even increasing relaxation times with temperature, suggesting an endothermic binding mechanism. This methodology expands the set of structure-properties available to biomass-derived DNA biomaterials and promises a new material system where a broad set of thermal and viscoelastic responses can be obtained due to the sheer number and variety of intercalating molecules.
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Affiliation(s)
- Shaina M Hughes
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Aylin Aykanat
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Nicholas G Pierini
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Wynter A Paiva
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - April A Weeks
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Austin S Edwards
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Owen C Durant
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
| | - Nathan J Oldenhuis
- Department of Chemistry, College of Engineering and Physical Science, University of New Hampshire, 23 Academic Way, Parsons Hall, Durham, NH 03824, United States of America
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2
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Kennedy ADW, DiNardi RG, Fillbrook LL, Donald WA, Beves JE. Visible-Light Switching of Metallosupramolecular Assemblies. Chemistry 2022; 28:e202104461. [PMID: 35102616 PMCID: PMC9302685 DOI: 10.1002/chem.202104461] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Indexed: 11/11/2022]
Abstract
A photoswitchable ligand and palladium(II) ions form a dynamic mixture of self-assembled metallosupramolecular structures. The photoswitching ligand is an ortho-fluoroazobenzene with appended pyridyl groups. Combining the E-isomer with palladium(II) salts affords a double-walled triangle with composition [Pd3 L6 ]6+ and a distorted tetrahedron [Pd4 L8 ]8+ (1 : 2 ratio at 298 K). Irradiation with 410 nm light generates a photostationary state with approximately 80 % of the E-isomer of the ligand and results in the selective disassembly of the tetrahedron, the more thermodynamically stable structure, and the formation of the triangle, the more kinetically inert product. The triangle is then slowly transformed back into the tetrahedron over 2 days at 333 K. The Z-isomer of the ligand does not form any well-defined structures and has a thermal half-life of 25 days at 298 K. This approach shows how a thermodynamically preferred self-assembled structure can be reversibly pumped to a kinetic trap by small perturbations of the isomer distribution using non-destructive visible light.
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Affiliation(s)
| | - Ray G. DiNardi
- School of ChemistryThe University of New South WalesSydneyNSW 2052Australia
| | - Lucy L. Fillbrook
- School of ChemistryThe University of New South WalesSydneyNSW 2052Australia
| | - William A. Donald
- School of ChemistryThe University of New South WalesSydneyNSW 2052Australia
| | - Jonathon E. Beves
- School of ChemistryThe University of New South WalesSydneyNSW 2052Australia
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3
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Poole III DA, Bobylev EO, Mathew S, Reek JNH. Entropy directs the self-assembly of supramolecular palladium coordination macrocycles and cages. Chem Sci 2022; 13:10141-10148. [PMID: 36128226 PMCID: PMC9430592 DOI: 10.1039/d2sc03154j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 08/09/2022] [Indexed: 12/02/2022] Open
Abstract
The self-assembly of palladium-based cages is frequently rationalized via the cumulative enthalpy (ΔH) of bonds between coordination nodes (M, i.e., Pd) and ligand (L) components. This focus on enthalpic rationale limits the complete understanding of the Gibbs free energy (ΔG) for self-assembly, as entropic (ΔS) contributions are overlooked. Here, we present a study of the M2linL3 intermediate species (M = dinitrato(N,N,N′,N′-tetramethylethylenediamine)palladium(ii), linL = 4,4′-bipyridine), formed during the synthesis of triangle-shaped (M3linL3) and square-shaped (M4linL4) coordination macrocycles. Thermochemical analyses by variable temperature (VT) 1H-NMR revealed that the M2linL3 intermediate exhibited an unfavorable (relative) ΔS compared to M3linL3 (triangle, ΔTΔS = +5.22 kcal mol−1) or M4linL4 (square, ΔTΔS = +2.37 kcal mol−1) macrocycles. Further analysis of these constructs with molecular dynamics (MD) identified that the self-assembly process is driven by ΔG losses facilitated by increases in solvation entropy (ΔSsolv, i.e., depletion of solvent accessible surface area) that drives the self-assembly from “open” intermediates toward “closed” macrocyclic products. Expansion of our computational approach to the analysis of self-assembly in PdnbenL2n cages (benL = 4,4'-(5-ethoxy-1,3-phenylene)dipyridine), demonstrated that ΔSsolv contributions drive the self-assembly of both thermodynamic cage products (i.e., Pd12benL24) and kinetically-trapped intermediates (i.e., Pd8cL16). These studies demonstrate that ΔS drives the self-assembly of supramolecular palladium-based coordination macrocycles and cages. As this ΔS contribution arises from solvation, these findings broadly reflect the thermodynamic drive of self-assembly to form compact structures.![]()
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Affiliation(s)
- D. A. Poole III
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - E. O. Bobylev
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - S. Mathew
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - J. N. H. Reek
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
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4
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Yu AC, Lian H, Kong X, Lopez Hernandez H, Qin J, Appel EA. Physical networks from entropy-driven non-covalent interactions. Nat Commun 2021; 12:746. [PMID: 33531475 PMCID: PMC7854746 DOI: 10.1038/s41467-021-21024-7] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 01/08/2021] [Indexed: 12/22/2022] Open
Abstract
Physical networks typically employ enthalpy-dominated crosslinking interactions that become more dynamic at elevated temperatures, leading to network softening. Moreover, standard mathematical frameworks such as time-temperature superposition assume network softening and faster dynamics at elevated temperatures. Yet, deriving a mathematical framework connecting the crosslinking thermodynamics to the temperature-dependent viscoelasticity of physical networks suggests the possibility for entropy-driven crosslinking interactions to provide alternative temperature dependencies. This framework illustrates that temperature negligibly affects crosslink density in reported systems, but drastically influences crosslink dynamics. While the dissociation rate of enthalpy-driven crosslinks is accelerated at elevated temperatures, the dissociation rate of entropy-driven crosslinks is negligibly affected or even slowed under these conditions. Here we report an entropy-driven physical network based on polymer-nanoparticle interactions that exhibits mechanical properties that are invariant with temperature. These studies provide a foundation for designing and characterizing entropy-driven physical crosslinking motifs and demonstrate how these physical networks access thermal properties that are not observed in current physical networks.
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Affiliation(s)
- Anthony C Yu
- Department of Materials Science & Engineering, Stanford University, Stanford, CA, USA
| | - Huada Lian
- Department of Materials Science & Engineering, Stanford University, Stanford, CA, USA
- Department of Chemical Engineering, Stanford University, Stanford, CA, USA
| | - Xian Kong
- Department of Chemical Engineering, Stanford University, Stanford, CA, USA
| | | | - Jian Qin
- Department of Chemical Engineering, Stanford University, Stanford, CA, USA
| | - Eric A Appel
- Department of Materials Science & Engineering, Stanford University, Stanford, CA, USA.
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5
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Bose A, Sau S, Mal P. Intramolecular C(sp3
)-H Imination towards Benzimidazoles Using Tetrabutylammonium Iodide and t
BuOOH. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900732] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Anima Bose
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI; PO Bhimpur-Padanpur, Via Jatni 752050 Bhubaneswar District Khurda, Odisha India
| | - Sudip Sau
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI; PO Bhimpur-Padanpur, Via Jatni 752050 Bhubaneswar District Khurda, Odisha India
| | - Prasenjit Mal
- School of Chemical Sciences; National Institute of Science Education and Research (NISER), HBNI; PO Bhimpur-Padanpur, Via Jatni 752050 Bhubaneswar District Khurda, Odisha India
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6
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Maiti S, Bose A, Mal P. Oxidative N-Arylation for Carbazole Synthesis by C–C Bond Activation. J Org Chem 2018; 83:8127-8138. [DOI: 10.1021/acs.joc.8b00921] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Saikat Maiti
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, P.O. Bhimpur-Padanpur, Via Jatni, District Khurda, Odisha 752050, India
| | - Anima Bose
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, P.O. Bhimpur-Padanpur, Via Jatni, District Khurda, Odisha 752050, India
| | - Prasenjit Mal
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, P.O. Bhimpur-Padanpur, Via Jatni, District Khurda, Odisha 752050, India
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7
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Lorenz Y, Gutiérrez A, Ferrer M, Engeser M. Bond Dissociation Energies of Metallo-supramolecular Building Blocks: Insight from Fragmentation of Selectively Self-Assembled Heterometallic Metallo-supramolecular Aggregates. Inorg Chem 2018; 57:7346-7354. [DOI: 10.1021/acs.inorgchem.8b00930] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yvonne Lorenz
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Albert Gutiérrez
- Departament de Quimica Inorgànica i Orgànica, Secció de Quimica Inorgànica, Universitat de Barcelona, Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - Montserrat Ferrer
- Departament de Quimica Inorgànica i Orgànica, Secció de Quimica Inorgànica, Universitat de Barcelona, Martí i Franquès 1-11, 08028 Barcelona, Spain
| | - Marianne Engeser
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
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8
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Mautner FA, Traber M, Fischer RC, Reichmann K, Vicente R. Synthesis and characterization of pseudohalide-metal(II) complexes with 4-methoxypyridine as co-ligand. Polyhedron 2018. [DOI: 10.1016/j.poly.2018.01.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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9
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Cecot G, Marmier M, Geremia S, De Zorzi R, Vologzhanina AV, Pattison P, Solari E, Fadaei Tirani F, Scopelliti R, Severin K. The Intricate Structural Chemistry of M II2nL n-Type Assemblies. J Am Chem Soc 2017; 139:8371-8381. [PMID: 28603972 DOI: 10.1021/jacs.7b04861] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The reaction of cis-blocked, square-planar MII complexes with tetratopic N-donor ligands is known to give metallasupramolecular assemblies of the formula M2nLn. These assemblies typically adopt barrel-like structures, with the ligands paneling the sides of the barrels. However, alternative structures are possible, as demonstrated by the recent discovery of a Pt8L4 cage with unusual gyrobifastigium-like geometry. To date, the factors that govern the assembly of MII2nLn complexes are not well understood. Herein, we provide a geometric analysis of M2nLn complexes, and we discuss how size and geometry of the ligand is expected to influence the self-assembly process. The theoretical analysis is complemented by experimental studies using different cis-blocked PtII complexes and metalloligands with four divergent pyridyl groups. Mononuclear metalloligands gave mainly assemblies of type Pt8L4, which adopt barrel- or gyrobifastigium-like structures. Larger assemblies can also form, as evidenced by the crystallographic characterization of a Pt10L5 complex and a Pt16L8 complex. The former adopts a pentagonal barrel structure, whereas the latter displays a barrel structure with a distorted square orthobicupola geometry. The Pt16L8 complex has a molecular weight of more than 23 kDa and a diameter of 4.5 nm, making it the largest, structurally characterized M2nLn complex described to date. A dinuclear metalloligand was employed for the targeted synthesis of pentagonal Pt10L5 barrels, which are formed in nearly quantitative yields.
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Affiliation(s)
| | | | - Silvano Geremia
- Centro di Eccellenza in Biocristallografia, Dipartimento di Scienze Chimiche e Farmaceutiche, Università di Trieste , 34127 Trieste, Italy
| | - Rita De Zorzi
- Centro di Eccellenza in Biocristallografia, Dipartimento di Scienze Chimiche e Farmaceutiche, Università di Trieste , 34127 Trieste, Italy
| | - Anna V Vologzhanina
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences , 119991 Moscow, Russia
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Bhat IA, Samanta D, Mukherjee PS. A Pd24 Pregnant Molecular Nanoball: Self-Templated Stellation by Precise Mapping of Coordination Sites. J Am Chem Soc 2015; 137:9497-502. [DOI: 10.1021/jacs.5b06628] [Citation(s) in RCA: 104] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Imtiyaz Ahmad Bhat
- Department of Inorganic and
Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Dipak Samanta
- Department of Inorganic and
Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Partha Sarathi Mukherjee
- Department of Inorganic and
Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
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11
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Howlader P, Mukherjee S, Saha R, Mukherjee PS. Conformation-selective coordination-driven self-assembly of a ditopic donor with PdII acceptors. Dalton Trans 2015; 44:20493-501. [DOI: 10.1039/c5dt03185k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Different binding conformations of 3-(5-(pyridin-3-yl)-1H-1,2,4-triazol-3-yl)pyridine (L) yielded a self-assembled 3D cube and 2D macrocycles selectively depending on the nature of acceptors. Selection of a particular conformation of the donor L by a specific metal acceptor during self-assembly was corroborated well by a theoretical study.
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Affiliation(s)
- Prodip Howlader
- Department of Inorganic and Physical Chemistry
- Indian Institute of Science
- Bangalore-560012
- India
| | - Sandip Mukherjee
- Department of Inorganic and Physical Chemistry
- Indian Institute of Science
- Bangalore-560012
- India
| | - Rajat Saha
- Guru Ghasidas Central University
- Koni
- India
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12
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Angurell I, Ferrer M, Gutiérrez A, Martínez M, Rocamora M, Rodríguez L, Rossell O, Lorenz Y, Engeser M. Kinetico-Mechanistic Insights on the Assembling Dynamics of Allyl-Cornered Metallacycles: The PtNpyBond is the Keystone. Chemistry 2014; 20:14473-87. [DOI: 10.1002/chem.201403467] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Indexed: 11/09/2022]
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13
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Kaufmann L, Traulsen NL, Springer A, Schröder HV, Mäkelä T, Rissanen K, Schalley CA. Evaluation of multivalency as an organization principle for the efficient synthesis of doubly and triply threaded amide rotaxanes. Org Chem Front 2014. [DOI: 10.1039/c4qo00077c] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Gütz C, Hovorka R, Stobe C, Struch N, Topić F, Schnakenburg G, Rissanen K, Lützen A. Self-Sorting Effects in the Self-Assembly of Metallosupramolecular Rhombi from Chiral BINOL-Derived Bis(pyridine) Ligands. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301314] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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