1
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Henriksen HC, Sowers AJ, Travis CR, Vulpis TD, Cope TA, Ouslander SK, Russell AF, Gagné MR, Pophristic V, Liu Z, Waters ML. Stimulus-Induced Relief of Intentionally Incorporated Frustration Drives Refolding of a Water-Soluble Biomimetic Foldamer. J Am Chem Soc 2023; 145:27672-27679. [PMID: 38054648 DOI: 10.1021/jacs.3c09883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
Frustrated, or nonoptimal, interactions have been proposed to be essential to a protein's ability to display responsive behavior such as allostery, conformational signaling, and signal transduction. However, the intentional incorporation of frustrated noncovalent interactions has not been explored as a design element in the field of dynamic foldamers. Here, we report the design, synthesis, characterization, and molecular dynamics simulations of the first dynamic water-soluble foldamer that, in response to a stimulus, exploits relief of frustration in its noncovalent network to structurally rearrange from a pleated to an intercalated columnar structure. Thus, relief of frustration provides the energetic driving force for structural rearrangement. This work represents a previously unexplored design element for the development of stimulus-responsive systems that has potential application to materials chemistry, synthetic biology, and molecular machines.
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Affiliation(s)
- Hanne C Henriksen
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Adam J Sowers
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Christopher R Travis
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Troy D Vulpis
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Thomas A Cope
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Sarah K Ouslander
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Alexander F Russell
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Michel R Gagné
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Vojislava Pophristic
- Department of Chemistry and Biochemistry, Rowan University, Glassboro, New Jersey 08028-1701 , United States
| | - Zhiwei Liu
- Department of Chemistry and Biochemistry, Rowan University, Glassboro, New Jersey 08028-1701 , United States
| | - Marcey L Waters
- Department of Chemistry, CB 3290, UNC Chapel Hill, Chapel Hill, North Carolina 27599, United States
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2
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de Carvasal KP, Vergoten G, Vasseur JJ, Smietana M, Morvan F. Supramolecular Recognition of Phosphodiester-Based Donor and Acceptor Oligomers Forming Gels in Water. Biomacromolecules 2023; 24:756-765. [PMID: 36724436 DOI: 10.1021/acs.biomac.2c01203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Inspired by automated DNA synthesis, electron-rich dialkoxynaphthalene (DAN) donor and electron-deficient naphthalene-tetracarboxylic diimide (NDI) acceptor phosphodiester-linked homohexamers were synthesized by the phosphoramidite method. Two types of hexamers were prepared, one with only one phosphodiester between the aromatics (i.e., DAN or NDI) and a second with two phosphodiesters around a propanediol between the aromatics, leading to the latter more flexible and more hydrophilic hexamers. The folding properties of these homohexamers alone or mixed together, in water only, were studied by UV-visible absorption spectroscopy and atomic force microscopy (AFM). AFM imaging revealed that a 1:1 mixture of hexaDAN and hexaNDI formed fibers by charge transfer donor-acceptor recognition leading to a hydrogel after drying. The organization of the resulting structures is strongly dependent on the nature of the complementary partner, leading to the formation of mono- or multilayer hydrogel networks with different compactness.
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Affiliation(s)
- Kévan Pérez de Carvasal
- Université de Montpellier, CNRS, ENSCM, Institut des Biomolécules Max Mousseron, Montpellier 34293, France
| | - Gérard Vergoten
- Université de Lille, Inserm, INFINITE - U1286, Institut de Chimie Pharmaceutique Albert Lespagnol (ICPAL), Faculté de Pharmacie, 3 rue du Professeur Laguesse, Lille 59006, France
| | - Jean-Jacques Vasseur
- Université de Montpellier, CNRS, ENSCM, Institut des Biomolécules Max Mousseron, Montpellier 34293, France
| | - Michael Smietana
- Université de Montpellier, CNRS, ENSCM, Institut des Biomolécules Max Mousseron, Montpellier 34293, France
| | - François Morvan
- Université de Montpellier, CNRS, ENSCM, Institut des Biomolécules Max Mousseron, Montpellier 34293, France
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3
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Zhou C, Wang Y, Muthukumar M, Zhang R, Zhao J, Jia D. Extraordinary Temperature Dependence of Hierarchically Assembled Macromolecular Structures with Memory. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Chao Zhou
- Beijing National Laboratory for Molecular Sciences, Laboratory of Polymer Physics and Chemistry, Institute of Chemistry Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yubin Wang
- Zhejiang International Scientific and Technological Cooperative Base of Biomedical Materials and Technology, Zhejiang Engineering Research Center for Biomedical Materials, Cixi Institute of Biomedical Engineering, Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo 315300, China
- Wanhua Chemical Group Co., Ltd., Yantai 264006, China
| | - Murugappan Muthukumar
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, Amherst, Massachusetts 01003, United States
| | - Ruoyu Zhang
- Zhejiang International Scientific and Technological Cooperative Base of Biomedical Materials and Technology, Zhejiang Engineering Research Center for Biomedical Materials, Cixi Institute of Biomedical Engineering, Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo 315300, China
| | - Jiang Zhao
- Beijing National Laboratory for Molecular Sciences, Laboratory of Polymer Physics and Chemistry, Institute of Chemistry Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Di Jia
- Beijing National Laboratory for Molecular Sciences, Laboratory of Polymer Physics and Chemistry, Institute of Chemistry Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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4
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Pérez de Carvasal K, Aissaoui N, Vergoten G, Bellot G, Vasseur JJ, Smietana M, Morvan F. Folding of phosphodiester-linked donor–acceptor oligomers into supramolecular nanotubes in water. Chem Commun (Camb) 2021; 57:4130-4133. [DOI: 10.1039/d1cc01064f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Water soluble foldamers, synthesized by DNA synthesis with dialkoxynaphthalene and naphthalene-tetracarboxylic diimide blocks, formed supramolecular nanotubes in water.
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Affiliation(s)
| | - Nesrine Aissaoui
- Université de Montpellier
- INSERM
- CNRS
- Centre de Biochimie Structurale
- Montpellier
| | - Gérard Vergoten
- Université de Lille
- Inserm
- INFINITE – U1286
- Institut de Chimie Pharmaceutique Albert Lespagnol (ICPAL)
- Faculté de Pharmacie
| | - Gaëtan Bellot
- Université de Montpellier
- INSERM
- CNRS
- Centre de Biochimie Structurale
- Montpellier
| | - Jean-Jacques Vasseur
- Université de Montpellier
- CNRS
- ENSCM
- Institut des Biomolécules Max Mousseron
- Montpellier
| | - Michael Smietana
- Université de Montpellier
- CNRS
- ENSCM
- Institut des Biomolécules Max Mousseron
- Montpellier
| | - François Morvan
- Université de Montpellier
- CNRS
- ENSCM
- Institut des Biomolécules Max Mousseron
- Montpellier
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5
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Wight CD, Xiao Q, Wagner HR, Hernandez EA, Lynch VM, Iverson BL. Mechanistic Analysis of Solid-State Colorimetric Switching: Monoalkoxynaphthalene-Naphthalimide Donor–Acceptor Dyads. J Am Chem Soc 2020; 142:17630-17643. [DOI: 10.1021/jacs.0c08137] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Christopher D. Wight
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Qifan Xiao
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Holden R. Wagner
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Eduardo A. Hernandez
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Vincent M. Lynch
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Brent L. Iverson
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States
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6
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Rinaldi S. The Diverse World of Foldamers: Endless Possibilities of Self-Assembly. Molecules 2020; 25:E3276. [PMID: 32708440 PMCID: PMC7397133 DOI: 10.3390/molecules25143276] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 07/13/2020] [Accepted: 07/16/2020] [Indexed: 02/07/2023] Open
Abstract
Different classes of foldamers, which are synthetic oligomers that adopt well-defined conformations in solution, have been the subject of extensive studies devoted to the elucidation of the forces driving their secondary structures and their potential as bioactive molecules. Regardless of the backbone type (peptidic or abiotic), the most important features of foldamers are the high stability, easy predictability and tunability of their folding, as well as the possibility to endow them with enhanced biological functions, with respect to their natural counterparts, by the correct choice of monomers. Foldamers have also recently started playing a starring role in the self-assembly of higher-order structures. In this review, selected articles will be analyzed to show the striking number of self-assemblies obtained for foldamers with different backbones, which will be analyzed in order of increasing complexity. Starting from the simplest self-associations in solution (e.g., dimers of β-strands or helices, bundles, interpenetrating double and multiple helices), the formation of monolayers, vesicles, fibers, and eventually nanostructured solid tridimensional morphologies will be subsequently described. The experimental techniques used in the structural investigation, and in the determination of the driving forces and mechanisms underlying the self-assemblies, will be systematically reported. Where applicable, examples of biomimetic self-assembled foldamers and their interactions with biological components will be described.
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Affiliation(s)
- Samuele Rinaldi
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy
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7
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Wenholz DS, Bhadbhade M, Kandemir H, Ho J, Kumar N, Black DS. Substituent effects in solid-state assembly of activated benzotriazoles. CrystEngComm 2019. [DOI: 10.1039/c8ce01757c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Aromatic donor–acceptor stacking involving electron-rich π-donors and electron-deficient π-acceptors has been utilized in a broad spectrum of diverse applications to great effect.
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Affiliation(s)
| | | | - Hakan Kandemir
- School of Chemistry
- UNSW Sydney
- Australia
- Department of Chemistry
- Faculty of Art and Science
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8
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Ikkanda BA, Iverson BL. Exploiting the interactions of aromatic units for folding and assembly in aqueous environments. Chem Commun (Camb) 2018; 52:7752-9. [PMID: 27080050 DOI: 10.1039/c6cc01861k] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A variety of non-covalent interactions (including hydrogen bonding, ionic interactions, metal coordination and desolvation/solvation) have been utilized to organize oligomers into well-defined structures. Herein is described a survey of aromatic foldamers that capitalize on electrostatic complementarity of substituted aromatic units to drive folding and assembly in aqueous environments. A brief description of recent advances in the understanding of aromatic interactions is provided, followed by examples of foldamers that exploit interactions between aromatic units to drive their assembly in predictable fashion. The history of our aromatic foldamers is traced from the first structure designed to fold into a pleated structure in an aqueous environment to a heteroduplex system more related to nucleic acids. Taken together, the results demonstrate that electrostatic complementarity of aromatic units provides a versatile framework for driving predictable folding and assembly in aqueous environments.
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Affiliation(s)
- B A Ikkanda
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, STOP A5300, Austin, TX 78712, USA.
| | - B L Iverson
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, STOP A5300, Austin, TX 78712, USA.
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9
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Wang C, Matile S. Anion-π Catalysts with Axial Chirality. Chemistry 2017; 23:11955-11960. [DOI: 10.1002/chem.201702672] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Indexed: 12/23/2022]
Affiliation(s)
- Chao Wang
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Stefan Matile
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
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10
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Gospodinova N, Tomšík E. Hydrogen-bonding versus π–π stacking in the design of organic semiconductors: From dyes to oligomers. Prog Polym Sci 2015. [DOI: 10.1016/j.progpolymsci.2014.10.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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11
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Shokouhi Mehr H, Romano NC, Altamimi R, Modarelli JM, Modarelli DA. Core substituted naphthalene diimide – metallo bisterpyridine supramolecular polymers: synthesis, photophysics and morphology. Dalton Trans 2015; 44:3176-84. [DOI: 10.1039/c4dt02719a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of metallo Ru(ii), Fe(ii), Co(ii) bisterpyridine polymers were prepared with core-substituted naphthalene diimide (NDI) groups inserted between two 4′-phenyl-2,2:6′,2′′-terpyridine (phtpy) groups.
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Affiliation(s)
- Hamideh Shokouhi Mehr
- Department of Chemistry and The Center for Laser and Optical Spectroscopy
- Knight Chemical Laboratory
- The University of Akron
- Akron
- USA
| | - Natalie C. Romano
- Department of Chemistry and The Center for Laser and Optical Spectroscopy
- Knight Chemical Laboratory
- The University of Akron
- Akron
- USA
| | - Rashid Altamimi
- Petrochemicals Research Institute
- King Abdulaziz City for Science and Technology
- Riyadh 11442
- Saudi Arabia
| | | | - David A. Modarelli
- Department of Chemistry and The Center for Laser and Optical Spectroscopy
- Knight Chemical Laboratory
- The University of Akron
- Akron
- USA
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12
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Pandeeswar M, Khare H, Ramakumar S, Govindaraju T. Crystallographic insight-guided nanoarchitectonics and conductivity modulation of an n-type organic semiconductor through peptide conjugation. Chem Commun (Camb) 2015; 51:8315-8. [DOI: 10.1039/c5cc01996f] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crystallographic insight-guided and bio-inspired molecular nanoarchitectonics of an n-type organic semiconductor is described to understand the structure–property correlation, for modulation of functional properties.
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Affiliation(s)
- M. Pandeeswar
- Bioorganic Chemistry Laboratory
- New Chemistry Unit
- Jawaharlal Nehru Centre for Advanced Scientific Research
- Bengaluru 560064
- India
| | | | | | - T. Govindaraju
- Bioorganic Chemistry Laboratory
- New Chemistry Unit
- Jawaharlal Nehru Centre for Advanced Scientific Research
- Bengaluru 560064
- India
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13
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Takada T, Otsuka Y, Nakamura M, Yamana K. Formation of a charge transfer complex within a hydrophobic cavity in DNA. RSC Adv 2014. [DOI: 10.1039/c4ra11761a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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14
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Gospodinova N, Tomšík E. WITHDRAWN: Hydrogen-bonding versus π–π stacking in the design of organic semiconductors: From dyes to oligomers. Prog Polym Sci 2014. [DOI: 10.1016/j.progpolymsci.2014.10.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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15
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Das A, Ghosh S. Supramolekulare Anordnungen mit Charge-Transfer-Wechselwirkungen zwischen Donor- und Akzeptor-Chromophoren. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201307756] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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16
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Das A, Ghosh S. Supramolecular Assemblies by Charge-Transfer Interactions between Donor and Acceptor Chromophores. Angew Chem Int Ed Engl 2014; 53:2038-54. [DOI: 10.1002/anie.201307756] [Citation(s) in RCA: 363] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Revised: 10/18/2013] [Indexed: 01/10/2023]
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17
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Peebles C, Alvey PM, Lynch V, Iverson BL. Time-Dependent Solid State Polymorphism of a Series of Donor-Acceptor Dyads. CRYSTAL GROWTH & DESIGN 2014; 14:290-299. [PMID: 24678269 PMCID: PMC3963176 DOI: 10.1021/cg401522v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
In order to exploit the use of favorable electrostatic interactions between aromatic units in directing the assembly of donor-acceptor (D-A) dyads, the present work examines the ability of conjugated aromatic D-A dyads with symmetric side chains to exhibit solid-state polymorphism as a function of time during the solid formation process. Four such dyads were synthesized and their packing in the solid-state from either slower (10-20 days) or faster (1-2 days) evaporation from solvent was investigated using single crystal X-ray analysis and powder X-ray diffraction. Two of the dyads exhibited tail-to-tail (A-A) packing upon slower evaporation from solvent and head-to-tail (D-A) packing upon faster evaporation from solvent. A combination of single crystal analysis and XRD patterns were used to create models wherein a packing model for the other two dyads is proposed. Our findings suggest that while side chain interactions in asymmetric aromatic dyads can play an important role in enforcing segregated D-A dyad assembly, slowly evaporating symmetrically substituted aromatic dyads allows for favorable electrostatic interactions between the aromatic moieties to facilitate the organization of the dyads in the solid-state.
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Affiliation(s)
| | | | | | - Brent L. Iverson
- Correspondence should be addressed to Dr. Brent L. Iverson. ; Office phone: 512-471-5053
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18
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Lyall CL, Shotton CC, Pérez-Salvia M, Dan Pantoş G, Lewis SE. Direct core functionalisation of naphthalenediimides by iridium catalysed C–H borylation. Chem Commun (Camb) 2014; 50:13837-40. [DOI: 10.1039/c4cc06522k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the first boron-substituted naphthalenediimides (NDIs), prepared by iridium catalysed C–H activation. Both mono- and diborylated products are available, which have been further elaborated by Suzuki–Miyaura coupling.
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19
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Kumar M, Venkata Rao K, George SJ. Supramolecular charge transfer nanostructures. Phys Chem Chem Phys 2014; 16:1300-13. [DOI: 10.1039/c3cp54190h] [Citation(s) in RCA: 128] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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