Characterization of Supramolecular Hidden Chirality of Hydrogen-Bonded Networks by Advanced Graph Set Analysis

Mechanical twinning in organic crystals

Various kinds of organic crystals can deform beyond their elastic limit, show unique mechanical properties, and switch directions of anisotropic functions by mechanical twinning based on stress-induced molecular movements.

A photoluminescent organosuperelastic crystal of 7-amino-4-methylcoumarin

A unique mechanical property of superelasticity is observed not only in so-called shape-memory alloys but also in molecular crystals.

Synthesis, structural characterization and electrochemical and magnetic studies of M(hfac)2 (M = CuII, CoII) and Nd(hfac)3 complexes of 4-amino-TEMPO

Three mononuclear complexes [M(hfac)x(ATEMPO)y], where M = Cu (11) and Co (12), x = y = 2; M = Nd (13), x = 4, y = 1, and two polynuclear complexes [{Cu(hfac)2(ATEMPO)}n], where n = 2 (14) and 4 (15), were obtained by the reaction of M(hfac)x (M = CuII, CoII, NdIII; x = 2, 3) with 4-amino-TEMPO (4-amino-2,2,6,6-tetramethylpiperidin-N-oxyl) in good yields and their structural, electrochemical and magnetic properties were examined. In all cases, the radical is coordinated to the metal through the amino group, except 15, and the metal ions have an octahedral geometry, except 13. Different coordination architectures of the copper complexes were obtained as a function of the stoichiometry and solvents used. In complexes 11 and 12 the radicals show an equatorial-equatorial and axial-equatorial arrangement, respectively, giving rise to two distinct 2D supramolecular systems through intermolecular interactions. Compound 13 is the first example of a lanthanide complex of the ATEMPO radical. The NdIII ion adopts a rare nine-coordination via binding to four hfac ligands and the radical. The dinuclear complex 14 shows a (Cu-O)2 core in which the CuII ions are bridged by the oxygen atoms from the hfac ligands. In compound 15 the ATEMPO radical acts as a bidentate ligand through the amino and nitroxyl groups leading to an unprecedented tetranuclear square-shaped framework. Cyclic voltammetry showed redox processes associated with the copper and TEMPO moieties. Electrochemical impedance spectroscopy revealed the temperature dependence of the conductivity for compound 15 with a maximum of 2.09 × 10-5 S cm-1 at 408 K. The magnetic behavior of complexes 11-15 is determined by metal-radical interactions. Ferromagnetic interaction has been observed for complex 11 due to the existence of two different exchange pathways arising from the conformational arrangement of the radicals around the metal center, whereas the single conformation of the radical in complex 14 resulted in a weak antiferromagnetic coupling. In complex 15 both O-Cu and N-Cu contacts are present giving rise to ferromagnetic and antiferromagnetic interactions, respectively.

Deciphering the hydrogen-bonding scheme in the crystal structure of triphenylmethanol: a tribute to George Ferguson and co-workers

The crystal structure of triphenylmethanol, C19H16O, has been redetermined using data collected at 295 and 153 K, and is compared to the model published by Ferguson et al. over 25 years ago [Ferguson et al. (1992). Acta Cryst. C48, 1272-1275] and that published by Serrano-González et al., using neutron and X-ray diffraction data [Serrano-González et al. (1999). J. Phys. Chem. B, 103, 6215-6223]. As predicted by these authors, the hydroxy groups are involved in weak intermolecular hydrogen bonds in the crystal, forming tetrahedral tetramers based on the two independent molecules in the asymmetric unit, one of which is placed on the threefold symmetry axis of the R-3 space group. However, the reliable determination of the hydroxy H-atom positions is difficult to achieve, for two reasons. Firstly, a positional disorder affects the full asymmetric unit, which is split over two sets of positions, with occupancy factors of ca 0.74 and 0.26. Secondly, all hydroxy H atoms are further disordered, either by symmetry, or through a positional disorder in the case of parts placed in general positions. We show that the correct description of the hydrogen-bonding scheme is possible only if diffraction data are collected at low temperature. The prochiral character of the hydrogen-bonded tetrameric supramolecular clusters leads to enantiomorphic three-dimensional graphs in each tetramer. The crystal is thus a racemic mixture of supS and supR motifs, consistent with the centrosymmetric nature of the R-3 space group.

Characterization of Hidden Chirality: Two-Fold Helicity in β-Strands

A β-strand is a component of a β-sheet and is an important structural motif in biomolecules. An α-helix has clear helicity, while chirality of a β-strand had been discussed on the basis of molecular twists generated by forming hydrogen bonds in parallel or non-parallel β-sheets. Herein we describe handedness determination of two-fold helicity in a zig-zag β-strand structure. Left- (M) and right-handedness (P) of the two-fold helicity was defined by application of two concepts: tilt-chirality and multi-point approximation. We call the two-fold helicity in a β-strand, whose handedness has been unrecognized and unclarified, as hidden chirality. Such hidden chirality enables us to clarify precise chiral characteristics of biopolymers. It is also noteworthy that characterization of chirality of high dimensional structures like a β-strand and α-helix, referred to as high dimensional chirality (HDC) in the present study, will contribute to elucidation of the possible origins of chirality and homochirality in nature because such HDC originates from not only asymmetric centers but also conformations in a polypeptide chain.

Structures of N-acetyl-DL-isoleucine, N-acetyl-DL-alloisoleucine and their ammonium salts; role of ammonium ions in crystal structure formation

The crystal structures of N-acetyl-DL-isoleucine, N-acetyl-DL-alloisoleucine and their ammonium salts show that these four compounds exist as racemic compounds around room temperature. The two ammonium salts are arranged around a 21 screw axis, forming a helical column which consists of ammonium ions and single enantiomeric anions similar to the crystals of the ammonium salts of optically active N-acetyl-L-isoleucine and N-acetyl-D-alloisoleucine. The ammonium ion and the carboxylate ion in the helix are connected by three hydrogen bonds, the fourth hydrogen bond being formed between the ammonium ion and an external acetyl amino group of the neighboring helical column. The fourth hydrogen bond is formed between the ammonium ion and an external acetyl amino group of the neighboring 21 column. Ammonium N-acetyl-DL-alloisoleucinate was revealed to exist as an unstable racemic compound due to conformational similarity between the racemic and optically active compounds in the solid state and was optically resolved by fractional crystallization at 293 K.

Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates

Functions of clusters in nano or sub-nano scale significantly depend on not only kinds of their components but also arrangements, or symmetry, of their components. Therefore, the arrangements in the clusters have been precisely characterized, especially for metal complexes. Contrary to this, characterizations of molecular arrangements in supramolecular clusters composed of organic molecules are limited to a few cases. This is because construction of the supramolecular clusters, especially obtaining a series of the supramolecular clusters, is difficult due to low stability of non-covalent bonds compare to covalent bonds. From this viewpoint, utilization of organic salts is one of the most useful strategies. A series of the supramolecules could be constructed by combinations of a specific organic molecule with various counter ions. Especially, primary ammonium carboxylates are suitable as typical examples of supramolecules because various kinds of carboxylic acids and primary amines are commercially available, and it is easy to change their combinations. Previously, it was demonstrated that primary ammonium triphenylacetates using various kinds of primary amines specifically construct supramolecular clusters, which are composed of four ammoniums and four triphenylacetates assembled by charge-assisted hydrogen bonds, in crystals obtained from non-polar solvents. This study demonstrates an application of the specific construction of the supramolecular clusters as a strategy to conduct systematical symmetric study for clarification of correlations between molecular arrangements in supramolecules and kinds and numbers of their components. In the same way with binary salts composed of triphenylacetates and one kind of primary ammoniums, ternary organic salts composed of triphenylacetates and two kinds of ammoniums construct the supramolecular clusters, affording a series of the supramolecular clusters with various kinds and numbers of the components.