Design and Application of Fluorescent Probes to Detect Cellular Physical Microenvironments

The microenvironment is indispensable for functionality of various biomacromolecules, subcellular compartments, living cells, and organisms. In particular, physical properties within the biological microenvironment could exert profound effects on both the cellular physiology and pathology, with parameters including the polarity, viscosity, pH, and other relevant factors. There is a significant demand to directly visualize and quantitatively measure the fluctuation in the cellular microenvironment with spatiotemporal resolution. To satisfy this need, analytical methods based on fluorescence probes offer great opportunities due to the facile, sensitive, and dynamic detection that these molecules could enable in varying biological settings from in vitro samples to live animal models. Herein, we focus on various types of small molecule fluorescent probes for the detection and measurement of physical parameters of the microenvironment, including pH, polarity, viscosity, mechanical force, temperature, and electron potential. For each parameter, we primarily describe the chemical mechanisms underlying how physical properties are correlated with changes of various fluorescent signals. This review provides both an overview and a perspective for the development of small molecule fluorescent probes to visualize the dynamic changes in the cellular environment, to expand the knowledge for biological process, and to enrich diagnostic tools for human diseases.

Atroposelective Ir-Catalyzed C-H Borylation of Phthalazine Heterobiaryls

The atroposelective iridium-catalyzed borylation of menthyloxy-substituted phthalazine heterobiaryls with diborons is reported. Utilizing [Ir(OMe)(COD)]2/2-aminopyridine as a rarely used efficient catalyst system, the heterobiaryls were selectively borylated in the 2-position of the carbocycle, exclusively yielding only one of the atropisomers, depending on the substitution of the phthalazine with (+)-menthyl or (-)-menthyl moieties. Exemplary further functionalization of a borylated atropisomer demonstrated that nickel-catalyzed Suzuki-Miyaura cross-coupling with an aryl halide was able to provide stereoretention to a certain degree (up to 75% de).

Thermally Controlled Exciplex Fluorescence in a Dynamic Homo[2]catenane

Motion-induced change in emission (MICE) is a phenomenon that can be employed to develop various types of probes, including temperature and viscosity sensors. Although MICE, arising from the conformational motion in particular compounds, has been studied extensively, this phenomenon has not been investigated in depth in mechanically interlocked molecules (MIMs) undergoing coconformational changes. Herein, we report the investigation of a thermoresponsive dynamic homo[2]catenane incorporating pyrene units and displaying relative circumrotational motions of its cyclophanes as evidenced by variable-temperature ¹H NMR spectroscopy and supported by its visualization through molecular dynamics simulations and quantum mechanics calculations. The relative coconformational motions induce a significant change in the fluorescence emission of the homo[2]catenane upon changes in temperature compared with its component cyclophanes. This variation in the exciplex emission of the homo[2]catenane is reversible as demonstrated by four complete cooling and heating cycles. This research opens up possibilities of using the coconformational changes in MIMs-based chromophores for probing fluctuations in temperature which could lead to applications in biomedicine or materials science.

Bis-borylated arylisoquinoline-derived dyes with a central aromatic core: towards efficient fluorescent singlet-oxygen photosensitizers

Polycyclic aromatic hydrocarbon chromophores that show an ideal bipartition between fluorescence and singlet oxygen production have been developed.

Linear Extension of Anthracene via B←N Lewis Pair Formation: Effects on Optoelectronic Properties and Singlet O2 Sensitization

The functionalization of polycyclic aromatic hydrocarbons (PAHs) via B←N Lewis pair formation offers an opportunity to judiciously fine-tune the structural features and optoelectronic properties, to suit the demands of applications in organic electronic devices, bioimaging, and as sensitizers for singlet oxygen generation. We demonstrate that the N-directed electrophilic borylation of 2,6-di(pyrid-2-yl)anthracene offers access to linearly extended acene derivatives Py-BR (R=Et, Ph, C₆ F₅ ). In comparison to indeno-fused 9,10-diphenylanthracene, the formal "BN for CC" replacement in Py-BR selectively lowers the LUMO, resulting in a much reduced HOMO-LUMO gap. An even more extended conjugated system with seven six-membered rings in a row (Qu-BEt) is obtained by borylation of 2,6-di(quinolin-8-yl)anthracene. Fluorinated Py-BPf shows particularly advantageous properties, including relatively lower-lying HOMO and LUMO levels, strong yellow-green fluorescence, and effective singlet oxygen sensitization, while resisting self-sensitized conversion to its endoperoxide.

A difluoroboron β-diketonate based thermometer with temperature-dependent emission wavelength

We report a series of difluoroboron β-diketonate fluorophores that manifest temperature-dependent emission wavelength accompanied by a change of fluorescence from green to orange. The distinct emission changes allow convenient and accurate measurements of temperature.

Recent Advances in π-Conjugated N^C-Chelate Organoboron Materials

Boron-containing π-conjugated materials are archetypical candidates for a variety of molecular scale applications. The incorporation of boron into the π-conjugated frameworks significantly modifies the nature of the parent π-conjugated systems. Several novel boron-bridged π-conjugated materials with intriguing structural, photo-physical and electrochemical properties have been reported over the last few years. In this paper, we review the properties and multi-dimensional applications of the boron-bridged fused-ring π-conjugated systems. We critically highlight the properties of π-conjugated N^C-chelate organoboron materials. This is followed by a discussion on the potential applications of the new materials in opto-electronics (O-E) and other areas. Finally, attempts will be made to predict the future direction/outlook for this class of materials.

A naphthalimide-based thermometer: heat-induced fluorescence “turn-on” sensing in a wide temperature range in ambient atmosphere

A heat-induced fluorescent “turn-on” sensor based on naphthalimide, NapPT-1, in which thioether chains were joined at the 4-site of naphthalimide, was designed and synthesized.

Arylisoquinoline-derived organoboron dyes with a triaryl skeleton show dual fluorescence

Four new dyes that derive from borylated arylisoquinolines were prepared, containing a third aryl residue (naphthyl, 4-methoxynaphthyl, pyrenyl or anthryl) that is linked via an additional stereogenic axis. The triaryl cores were synthesized by Suzuki couplings and then transformed into boronic acid esters by employing an Ir(I)-catalyzed reaction. The chromophores show dual emission behavior, where the long-wavelength emission band can reach maxima close to 600 nm in polar solvents. The fluorescence quantum yields of the dyes are generally in the range of 0.2-0.4, reaching in some cases values as high as 0.5-0.6. Laser-flash photolysis provided evidence for the existence of excited triplet states. The dyes form fluoroboronate complexes with fluoride anions, leading to the observation of the quenching of the long-wavelength emission band and ratiometric response by the build-up of a hypsochromically shifted emission signal.

π-Extended Four-Coordinate Organoboron N,C-Chelates as Two-Photon Absorbing Chromophores

Four-coordinate N,C-chelate organoboron dyes with alkynyl spacers were synthesized by Heck alkynylation. These dyes are π-extended analogues of the recently reported class of four-coordinate borylated arylisoquinolines (BAI). Depending on the electron-donor substitution, they feature an intramolecular charge-transfer (ICT) character in the excited state. This translates into pronounced apparent Stokes shifts (up to 8500 cm^-1) and a solvatofluorochromic behavior. In general, the observed emission quantum yields are high in nonpolar media (Φ_F ca. 0.5-0.6). For the dye with the most pronounced ICT rather high emission quantum yields (Φ_F ca. 0.4) are observed for emissions with maxima longer than 600 nm in solvents of moderate polarity. The π-extended dyes show interesting two-photon absorption (TPA) properties, maintaining high cross sections (up to 60 GM) in the near-infrared wavelength window (>900 nm). One of the dyes was designed as dimeric chromophore, integrating the acceptor-π-acceptor (A-π-A) format. This alternative design showed no ICT behavior but led to the observation of high two-photon-absorption (TPA) cross sections (ca. 220 GM at 700 nm). All investigated dyes show pronounced photostability, providing added value to this structural and photofunctional extension of the BAI dye platform.

Emissive Organic Exciplexes in Water

Unlike numerous known examples of exciplexes (products of charge formation reactions), we reported recently that cationic exciplexes (products of charge shift reactions) can be formed with N-methylisoquinolinium as an excited acceptor and alkyl benzene donors. We have now synthesized five intramolecular analogues (isoquinolinium linked by a trimethylene tether to alkyl benzenes) that proved to be well suited to demonstrating that emissive exciplexes can be formed in water from purely organic components. Three conformers (anti, gauche, and folded) leading to electron transfer were identified using a combination of absorption spectroscopy, fluorometry, and time-correlated single photon counting. The hydrophobicity of the donor moiety was found to enhance the formation of the folded conformer, which leads directly to exciplex formation. Electronic coupling matrix elements between ground, charge-transfer, and locally excited states were determined from correlations between radiative rate constants and average emission frequencies. The charge transfer (CT) character of the exciplexes (88-97%) was calculated from the electronic coupling. In spite of such a high CT character in a highly polar solvent, exciplex fluorescence quantum yields up to 0.03 and lifetimes up to 17 ns were observed.

Temperature-Responsive Fluorescent Organoplatinum(II) Metallacycles

The synthesis, characterization, and temperature-responsive properties of two fluorescent organoplatinum(II) metallacycles are reported. Metallacycles M1 and M2 were prepared via the coordination-driven self-assembly of a 120° triarylamine ligand L1 and a 120° diplatinum(II) acceptor Pt-1 or 180° diplatinum(II) acceptor Pt-2, respectively. M1 and M2 are hexagonal metallacycles, comprising of three or six freely rotating anthracene pendants on their periphery, respectively. In response to the temperature variation between -20 and 60 °C, the ligand displays irregular emission changes, whereas both metallacycles show reversible absorption and emission spectral changes in THF. The changes in their green emission intensity also exhibit a linear correlation with the temperature variation, with an average sensitivity of -0.67% and -0.77% per °C for M1 and M2, respectively. Furthermore, in coordinating solvents, such as DMF and CH3CN, M1 and M2 show different behaviors: in the lower temperature range, i.e., below 30 °C, their spectral changes are similar to those observed in THF; however, at a higher temperature the metallacycles were presumably destroyed by the solvents and displayed ratiometric fluorescent responses, including a cyan emission of the ligand L1.

Bis(dioxaborine) Dyes with Variable π-Bridges: Towards Two-Photon Absorbing Fluorophores with Very High Brightness

Bis(dioxaborine) dyes of the A-π-A format (A: acceptor, π: conjugated bridge) were prepared and photophysically characterized. The best performing dyes feature (a) visible-light absorption (>400 nm), (b) high molar absorption coefficients (up to 70000 m^-1  cm^-1 ), (c) Stokes shifts in the range of ca. 2500-5800 cm^-1 , and (d) strong fluorescence emission with quantum yields of up to 0.74. This yields very bright-emitting dyes for one-photon excitation. However, the most intriguing feature of the dyes is their strong two-photon absorption. This was achieved by means of increased π-conjugation in the phenylene or phenylene-thiophene bridges through the variation of the conjugation length and rigidity. This provided two-photon absorption cross sections of up to 2800 GM (1 Goeppert-Mayer (GM)=10^-50  cm⁴  s photon^-1 ). Considering the mentioned high fluorescence quantum yields, exceptionally bright-emitting A-π-A two-photon absorbing dyes with low molecular mass are obtained. Time-dependent density-functional theory calculations corroborated the experimental results.

Functional conjugated pyridines via main-group element tuning

The functional properties arising from a combination of main-group elements with pyridine-based organic conjugated scaffolds are highlighted.

Halogen bond triggered aggregation induced emission in an iodinated cyanine dye for ultra sensitive detection of Ag nanoparticles in tap water and agricultural wastewater

Aggregation induced emission (AIE) has emerged as a powerful method for sensing applications. Based on AIE triggered by halogen bond (XB) formation, an ultrasensitive and selective sensor for picomolar detection of Ag nanoparticles (Ag NPs) is reported. The dye (CyI) has an iodine atom in its skeleton which functions as a halogen bond acceptor, and aggregates on the Ag NP plasmonic surfaces as a halogen bond donor or forms halogen bonds with the vacant π orbitals of silver ions (Ag⁺). Formation of XB leads to fluorescence enhancement, which forms the basis of the Ag NPs or Ag⁺ sensor. The sensor response is linearly dependent on the Ag NP concentration over the range 1.0–8.2 pM with an LOD of 6.21 pM (σ = 3), while for Ag⁺ it was linear over the 1.0–10 μM range (LOD = 2.36 μM). The sensor shows a remarkable sensitivity for Ag NPs (pM), compared to that for Ag⁺ (μM). The sensor did not show any interference from different metal ions with 10-fold higher concentrations. This result indicates that the proposed sensor is inexpensive, simple, sensitive, and selective for the detection of Ag NPs in both tap and wastewater samples.

Based on AIE triggered by halogen bond (XB) formation, we established an ultrasensitive and selective sensor for picomolar detection of Ag nanoparticles (Ag NPs).

Red-Emitting Tetracoordinate Organoboron Chelates: Synthesis, Photophysical Properties, and Fluorescence Microscopy

Seven tetracoordinate organoboron fluorophores with heterobiaryl N,O- or N,N-chelate ligands were prepared and photophysically characterized (in toluene). The electronic variation of the heteroaromatic moiety provided a means for the fine-tuning of the UV/vis absorption and emission spectra. In the most interesting cases, the spectra were red-shifted to maximum absorbance at wavelengths longer than 500 nm and emission maxima between 620 and 660 nm. The pronounced intramolecular charge-transfer character of the dyes yielded large Stokes shifts (3500-5100 cm^-1), while maintaining appreciable fluorescence quantum yields of up to 0.2 for emission maxima longer than 600 nm. The lipophilic character of the dyes enabled their application as stains of vesicle substructures in confocal fluorescence microscopy imaging.

Coumarin 545: an emission reference dye with a record-low temperature coefficient for ratiometric fluorescence based temperature measurements

The emission intensities of coumarin 545 solution exhibit a low temperature dependence, with a record-low temperature coefficient of only ∼0.025% per °C.

Thermo-responsive white-light emission based on tetraphenylethylene- and rhodamine B-containing boronate nanoparticles

White-light emissive boronate nanoparticles have been prepared, which exhibit reversible and thermo-responsive emission in the investigated temperature range (5–65 °C) with a temperature sensitivity of 1.1% K⁻¹ in water.

Metal–organic frameworks for luminescence thermometry

We describe the recent progress made in luminescent MOF thermometers, and especially highlight the development of dual-emitting ratiometric thermometers.

A twisted-intramolecular-charge-transfer (TICT) based ratiometric fluorescent thermometer with a mega-Stokes shift and a positive temperature coefficient

The fluorescence intensity of N,N-dimethyl-4-((2-methylquinolin-6-yl)ethynyl)aniline exhibits an unusual intensification with increasing temperature, by activating more vibrational bands and leading to stronger TICT emissions upon heating in dimethyl sulfoxide. Based on the different temperature dependence at various wavelengths, as shown in the TICT fluorescence spectrum, this dye can be employed to ratiometrically detect temperature.