Deoxyribonucleoside-Modified Squaraines as Near-IR Viscosity Sensors

Synthesis of A2-D2-A1-D1 type red-emitting unsymmetrical squaraine dye: Influence of additional pyridine moiety on photophysical, electrochemical, photo and thermal stability

We have synthesized a π-conjugated acceptor-donor-acceptor-donor (A²-D²-A¹-D¹) type of unsymmetrical squaraine dye, signified by USQ-1 based on 1-ethyl-2,3,3,8-tetramethyl-2,3-dihydro-1H-pyrrolo[3,2-h] quinoline moiety to improve the absorption as well as emission spectra to the red-emitting region. The influence of pyridine as a subsidiary electron acceptor unit on various properties in USQ-1 dye was compared with their close relative dye (USQ-2). The synthesized dyes were examined by FT-IR, HR-MS, ¹H, and ¹³C NMR spectroscopy. This novel unsymmetrical squaraine dye shows a strong absorption with high molar absorptivity (˃10⁵ L mol^-1 cm^-1) in the range of 676-661 nm from non-polar to polar solvents. The intramolecular charge transfer (ICT) process from donor to the acceptor moiety in a non-polar to polar solvent has been investigated with the help of oscillator strengths (f), as well as transition dipole moments (μ_eg). These dyes showed a negative solvatochromic shift from non-polar to polar solvent. The quantitative analysis of charge transfer from the ground to the excited state of these squaraine dyes was calculated by Reichardt's E_T (30) scale plot. The comparative electrochemical, as well as the thermal study of these unsymmetrical squaraines, were studied with the aid of cyclic voltammetry and thermogravimetric analysis (TGA), respectively. Additionally, A²-D²-A¹-D¹ type dye (USQ-1) showed an improved photo-stability compared to D²-A¹-D¹ type dye (USQ-2). The computational (theoretical) study of these dyes was supported with the assistance of density functional theory (DFT) together with time-dependent density functional theory (TD-DFT).

Photophysical properties and bioimaging application of an aminonaphthalimide-squaraine non-conjugated system

An aminonaphthalimide-squaraine non-conjugated system was designed and synthetized with the purpose of preparing fluorescent molecule in the 650-700 nm region that could operate via energy transfer (ET) between covalently linked naphthalimide and squaraine chromophores. The photophysical properties of the new fluorescent system were explored with the aim of understanding the ET in one- and two-photon excitation modes. The spectroscopic techniques employed in the characterization includes; absorption, fluorescence, quantum yields and fluorescence lifetime measurements in different solvents. The effect of polarity of solvents on efficiencies of ET were evaluated using one- and two-photon excited fluorescence. The optical behavior of the non-conjugated system was compared with its individual squaraine and naphthalimide moieties. The two-photon absorption (TPA) spectrum of the molecule was obtained between 750 and 1040 nm, with the largest two-photon cross section (δ_TPA)above 4200 GM. Finally, the applicability of the molecule for fluorescence imaging in the one- and two-photon excitation mode was demonstrated in N13 Microglial cells. The in vitro and in vivo confocal microscopy studies indicated that the non-conjugated system efficiently accumulated in the cytoplasm suggesting it could be utilized as a subcellular probe.

Screening of dicyanoisophorone-based probes for highly sensitive detection of viscosity changes in living cells and zebrafish

Herein, seven viscosity-sensitive probes were developed via simple structural modification of dicyanoisophorone (DCO)-derived dyes. Among them, DCO-5 significantly enhances (180-fold) the response signal in highly viscous aqueous media while showing insensitivity to polarity changes or pH variations, and enables the successful detection of viscosity changes in nystatin-treated HepG2 cells, PC 12 cells and zebrafish.

Spectral properties of ionic benzotristhiazole based donor-acceptor NLO-phores in polymer matrices and their one- and two-photon cellular imaging ability

A series of ionic benzotristhiazolium (BTT) push-pull chromophores, with different nitrogen donor groups and different lengths of conjugated bridges, was successfully doped in polar polymer matrices (PVC and PSS). The spectral (photophysical) properties of their low concentration thin polymeric films are compared with those in solution and are discussed in terms of matrix polarity/viscosity influence, specific polymer-chromophore interaction, structure-spectral property relationship and Twisted Intramolecular Charge-Transfer (TICT) state formation. The elimination of a non-emissive phantom and TICT state formation by restricted intramolecular rotations in the polymer matrix or viscous solvent results in a relatively high Φ_F of all the investigated NLO-phores; particularly for near-infrared NIR molecular rotors bearing diphenylamino and julolidine donor groups. Because of cationic characteristics, small molecular weight, calculated high second hyperpolarizability and significant emission efficiency dependence on surroundings' viscosity (rigidochromic effect), two dyes were chosen as candidates for potential fluorescent probes for one-photon (1P) and two photon (2P) cellular imaging. The selected BTT NLO-phore with a julolidine donor is promising as a mitochondria-specific fluorescent small molecular probe for live cell super-resolution imaging with low cytotoxicity and good photostability, and is also potentially suitable for super-resolution STED imaging.

A Deoxyuridine-Based Far-Red Emitting Viscosity Sensor

A novel deoxyuridine (dU) benzothiazolium (BZ) derivative, referred to as dU-BZ, is reported that was synthesized via Sonogashira coupling reaction methodology. The deoxyuridine building block was introduced to enhance hydrophilicity, while an alkynylated benzothiazolium dye was incorporated for long wavelength absorption to reduce potential phototoxicity that is characteristic of using UV light to excite common fluorphores, better discriminate from native autofluorescence, and potentially facilitate deep tissue imaging. An impressive 30-fold enhancement of fluorescence intensity of dU-BZ was achieved upon increasing viscosity. Fluorescence quantum yields in 99% glycerol/1% methanol (v/v) solution as a function of temperature (293–343 K), together with viscosity-dependent fluorescence lifetimes and radiative and non-radiative rate constants in glycerol/methanol solutions (ranging from 4.8 to 950 cP) were determined. Both fluorescence quantum yields and lifetimes increased with increased viscosity, consistent with results predicted by theory. This suggests that the newly-designed compound, dU-BZ, is capable of functioning as a probe of local microviscosity, an aspect examined by in vitro bioimaging experiments.

Synthesis, optical properties, and electronic structures of nucleobase-containing π-conjugated oligomers

The molecular recognition properties of the nucleobases instruct the formation of complex three-dimensional architectures in natural and synthetic systems; relatively unexplored is their use as building blocks for π-conjugated materials where they might mutually tune electronic and supramolecular structures. Toward this goal, an introductory set (1a-d and 2a-d) of six purine-terminated and two pyrimidine-terminated π-conjugated oligomers has been synthesized and used to develop experimental electronic and photophysical structure-property trends. Unlike 2,2':5',2″-terthiophene (TTT) derivatives 2a-d, intramolecular charge transfer dominates oligomers 1a-d bearing a 4,7-bisthienylbenzothiadiazole (TBT) spacer due to the strong electron-accepting ability of its benzothiadiazole (BTD) ring. The resulting donor-acceptor-donor systems feature lower HOMO-LUMO gaps than the terthiophene-linked nucleobases (ΔE(g) ∼ 1.8 eV vs 2.4 eV based on electrochemical measurements), and the lowest so far for π-conjugated molecules that include nucleobases within the π-framework. Experiments reveal a dependence of photophysical and electronic structure on the nature of the nucleobase and are in good agreement with theoretical calculations performed at the B3LYP/6-31+G** level. Overall, the results show how nucleobase heterocycles can be installed within π-systems to tune optical and electronic properties. Future work will evaluate the consequences of these information-rich components on supramolecular π-conjugated structure.

Dual use of porphyrazines as sensitizers and viscosity markers in photodynamic therapy

A dual-function photoactive macrocycle enables simultaneous viscosity measurements and photodynamic therapy treatment, allowing the monitoring of PDT progress by FLIM.

Polymerase synthesis of DNA labelled with benzylidene cyanoacetamide-based fluorescent molecular rotors: fluorescent light-up probes for DNA-binding proteins

Fluorescent molecular rotors are for the first time used as light-up probes for sensing of DNA–protein interaction.