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Kojima M, Abe S, Ueno T. Engineering of protein crystals for use as solid biomaterials. Biomater Sci 2021; 10:354-367. [PMID: 34928275 DOI: 10.1039/d1bm01752g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Protein crystals have attracted a great deal of attention as solid biomaterials because they have porous structures created by regular assemblies of proteins. The lattice structures of protein crystals are controlled by designing molecular interfacial interactions via covalent bonds and non-covalent bonds. Protein crystals have been functionalized as templates to immobilize foreign molecules such as metal nanoparticles, metal complexes, and proteins. These hybrid crystals are used as functional materials for catalytic reactions and structural analysis. Furthermore, in-cell protein crystals have been studied extensively, providing progress in rapid protein crystallization and crystallography. This review highlights recent advances in crystal engineering for protein crystallization and generation of solid functional materials both in vitro and within cells.
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Affiliation(s)
- Mariko Kojima
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta 4259-B55, Midori-ku, Yokohama 226-8501, Japan.
| | - Satoshi Abe
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta 4259-B55, Midori-ku, Yokohama 226-8501, Japan.
| | - Takafumi Ueno
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta 4259-B55, Midori-ku, Yokohama 226-8501, Japan.
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2
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Fernández-Penas R, Verdugo-Escamilla C, Martínez-Rodríguez S, Gavira JA. Production of Cross-Linked Lipase Crystals at a Preparative Scale. CRYSTAL GROWTH & DESIGN 2021; 21:1698-1707. [PMID: 34602865 PMCID: PMC8479976 DOI: 10.1021/acs.cgd.0c01608] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 02/10/2021] [Indexed: 05/14/2023]
Abstract
The autoimmobilization of enzymes via cross-linked enzyme crystals (CLECs) has regained interest in recent years, boosted by the extensive knowledge gained in protein crystallization, the decrease of cost and laboriousness of the process, and the development of potential applications. In this work, we present the crystallization and preparative-scale production of reinforced cross-linked lipase crystals (RCLLCs) using a commercial detergent additive as a raw material. Bulk crystallization was carried out in 500 mL of agarose media using the batch technique. Agarose facilitates the homogeneous production of crystals, their cross-linking treatment, and their extraction. RCLLCs were active in an aqueous solution and in hexane, as shown by the hydrolysis of p-nitrophenol butyrate and α-methylbenzyl acetate, respectively. RCLLCs presented both high thermal and robust operational stability, allowing the preparation of a packed-bed chromatographic column to work in a continuous flow. Finally, we determined the three-dimensional (3D) models of this commercial lipase crystallized with and without phosphate at 2.0 and 1.7 Å resolutions, respectively.
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Affiliation(s)
- Raquel Fernández-Penas
- Laboratorio
de Estudios Cristalográficos, Instituto Andaluz de Ciencias
de la Tierra, Consejo Superior de Investigaciones
Científicas-Universidad de Granada, Avenida de las Palmeras 4, Armilla, 18100 Granada, Spain
| | - Cristóbal Verdugo-Escamilla
- Laboratorio
de Estudios Cristalográficos, Instituto Andaluz de Ciencias
de la Tierra, Consejo Superior de Investigaciones
Científicas-Universidad de Granada, Avenida de las Palmeras 4, Armilla, 18100 Granada, Spain
| | - Sergio Martínez-Rodríguez
- Laboratorio
de Estudios Cristalográficos, Instituto Andaluz de Ciencias
de la Tierra, Consejo Superior de Investigaciones
Científicas-Universidad de Granada, Avenida de las Palmeras 4, Armilla, 18100 Granada, Spain
- Departamento
de Bioquímica y Biología Molecular III e Inmunología, Universidad de Granada, Avenida de la Investigación 11, 18071 Granada, Spain
| | - José A. Gavira
- Laboratorio
de Estudios Cristalográficos, Instituto Andaluz de Ciencias
de la Tierra, Consejo Superior de Investigaciones
Científicas-Universidad de Granada, Avenida de las Palmeras 4, Armilla, 18100 Granada, Spain
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3
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Dager A, Baliyan A, Kurosu S, Maekawa T, Tachibana M. Ultrafast synthesis of carbon quantum dots from fenugreek seeds using microwave plasma enhanced decomposition: application of C-QDs to grow fluorescent protein crystals. Sci Rep 2020; 10:12333. [PMID: 32704038 PMCID: PMC7378176 DOI: 10.1038/s41598-020-69264-9] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 07/09/2020] [Indexed: 01/06/2023] Open
Abstract
Herein, we present the rapid synthesis of mono-dispersed carbon quantum dots (C-QDs) via a single-step microwave plasma-enhanced decomposition (MPED) process. Highly-crystalline C-QDs were synthesized in a matter of 5 min using the fenugreek seeds as a sustainable carbon source. It is the first report, to the best of our knowledge, where C-QDs were synthesized using MPED via natural carbon precursor. Synthesis of C-QDs requires no external temperature other than hydrogen (H2) plasma. Plasma containing the high-energy electrons and activated hydrogen ions predominantly provide the required energy directly into the reaction volume, thus maximizing the atom economy. C-QDs shows excellent Photoluminescence (PL) activity along with the dual-mode of excitation-dependent PL emission (blue and redshift). We investigate the reason behind the dual-mode of excitation-dependent PL. To prove the efficacy of the MPED process, C-QDs were also derived from fenugreek seeds using the traditional synthesis process, highlighting their respective size-distribution, crystallinity, quantum yield, and PL. Notably, C-QDs synthesis via MPED was 97.2% faster than the traditional thermal decomposition process. To the best of our knowledge, the present methodology to synthesize C-QDs via natural source employing MPED is three times faster and far more energy-efficient than reported so far. Additionally, the application of C-QDs to produce the florescent lysozyme protein crystals "hybrid bio-nano crystals" is also discussed. Such a guest-host strategy can be exploited to develop diverse and complex "bio-nano systems". The florescent lysozyme protein crystals could provide a platform for the development of novel next-generation polychrome luminescent crystals.
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Affiliation(s)
- Akansha Dager
- Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama, 236-0027, Japan.
| | - Ankur Baliyan
- NISSAN ARC, LTD, 1-Natsushima-cho, Yokosuka, 236-0061, Japan
| | - Shunji Kurosu
- Bio-Nano Electronics Research Centre, Toyo University, 2100, Kujirai, Kawagoe, Saitama, 350-8585, Japan
| | - Toru Maekawa
- Bio-Nano Electronics Research Centre, Toyo University, 2100, Kujirai, Kawagoe, Saitama, 350-8585, Japan
| | - Masaru Tachibana
- Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama, 236-0027, Japan.
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4
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Uwada T, Kouno K, Ishikawa M. In Situ Absorption and Fluorescence Microspectroscopy Investigation of the Molecular Incorporation Process into Single Nanoporous Protein Crystals. ACS OMEGA 2020; 5:9605-9613. [PMID: 32363313 PMCID: PMC7191835 DOI: 10.1021/acsomega.0c01038] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 04/02/2020] [Indexed: 05/27/2023]
Abstract
Protein crystals exhibit distinct three-dimensional structures, which contain well-ordered nanoporous solvent channels, providing a chemically heterogeneous environment. In this paper, the incorporation of various molecules into the solvent channels of native hen egg-white lysozyme crystals was demonstrated using fluorescent dyes, including acridine yellow G, rhodamine 6G, and eosin Y. The process was evaluated on the basis of absorption and fluorescence microspectroscopy at a single-crystal level. The molecular loading process was clearly visualized as a function of time, and it was determined that the protein crystals could act as nanoporous materials. It was found that the incorporation process is strongly dependent on the molecular charge, leading to heterogeneous molecular aggregation, which suggests host-guest interaction of protein crystals from the viewpoint of nanoporous materials.
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5
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Guagnini F, Engilberge S, Ramberg KO, Pérez J, Crowley PB. Engineered assembly of a protein–cucurbituril biohybrid. Chem Commun (Camb) 2020; 56:360-363. [DOI: 10.1039/c9cc07198a] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Additional Q7 binding sites drive protein aggregation in solution and statistical disorder in the crystalline biohybrid suggest new possibilities for protein-based materials.
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Affiliation(s)
| | | | - Kiefer O. Ramberg
- School of Chemistry
- National University of Ireland Galway
- Galway
- Ireland
| | - Javier Pérez
- Synchrotron SOLEIL
- L’Orme des Merisiers
- 91192 Gif-sur-Yvette Cedex
- France
| | - Peter B. Crowley
- School of Chemistry
- National University of Ireland Galway
- Galway
- Ireland
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6
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Hartje LF, Snow CD. Protein crystal based materials for nanoscale applications in medicine and biotechnology. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2018; 11:e1547. [DOI: 10.1002/wnan.1547] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 09/28/2018] [Accepted: 10/12/2018] [Indexed: 12/17/2022]
Affiliation(s)
- Luke F. Hartje
- Department of Biochemistry and Molecular Biology Colorado State University Fort Collins Colorado
| | - Christopher D. Snow
- Department of Chemical and Biological Engineering Colorado State University Fort Collins Colorado
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7
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Ren W, Chen S, Li S, Zhang Y, Liu J, Guan M, Yang H, Li N, Han C, Li T, Zhao Z, Ge J. Photoluminescence Enhancement of Carbon Dots by Surfactants at Room Temperature. Chemistry 2018; 24:15806-15811. [DOI: 10.1002/chem.201804436] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Indexed: 12/27/2022]
Affiliation(s)
- Wei Ren
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Shiqing Chen
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials, and CityU-CAS Joint Laboratory of Functional Materials and Devices; Technical Institute of Physics and Chemistry, Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Shumu Li
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
| | - Yangyang Zhang
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Jianan Liu
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
| | - Ming Guan
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Hui Yang
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Na Li
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Chao Han
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Tuo Li
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Zhenwen Zhao
- Beijing National Laboratory for Molecular Sciences, CAS Research/Education Center for Excellence in Molecular Sciences; Key Laboratory of Analytical Chemistry for Living Biosystems; Institute of Chemistry, Chinese Academy of Sciences, Beijing Mass Spectrum Center; Beijing 100190 P. R. China
- Graduate School; University of Chinese Academy of Sciences; Beijing 100190 P. R. China
| | - Jiechao Ge
- Key Laboratory of Photochemical Conversion and Optoelectronic Materials, and CityU-CAS Joint Laboratory of Functional Materials and Devices; Technical Institute of Physics and Chemistry, Chinese Academy of Sciences; Beijing 100190 P. R. China
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Abe S, Maity B, Ueno T. Design of a confined environment using protein cages and crystals for the development of biohybrid materials. Chem Commun (Camb) 2018; 52:6496-512. [PMID: 27032539 DOI: 10.1039/c6cc01355d] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
There is growing interest in the design of protein assemblies for use in materials science and bionanotechnology. Protein assemblies, such as cages and crystalline protein structures, provide confined chemical environments that allow immobilization of metal complexes, nanomaterials, and proteins by metal coordination, assembly/disassembly reactions, genetic manipulation and crystallization methods. Protein assembly composites can be used to prepare hybrid materials with catalytic, magnetic and optical properties for cellular applications due to their high stability, solubility and biocompatibility. In this feature article, we focus on the recent development of ferritin as the most promising molecular template protein cage and in vivo and in vitro engineering of protein crystals as solid protein materials with functional properties.
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Affiliation(s)
- Satoshi Abe
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechonology, Tokyo Institute of Techonology, B-55, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.
| | - Basudev Maity
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechonology, Tokyo Institute of Techonology, B-55, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.
| | - Takafumi Ueno
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechonology, Tokyo Institute of Techonology, B-55, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.
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Zhang Y, Zhang X, Tang J, Snow CD, Sun G, Kowalski AE, Hartje LF, Zhao N, Wang Y, Belfiore LA. Synthesis of luminescent lanthanide complexes within crosslinked protein crystal matrices. CrystEngComm 2018. [DOI: 10.1039/c8ce00318a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Eu(TTA)3phen was synthesized inside of crosslinked protein crystals. And we characterized the volumetric changes quantitatively induced by DMSO.
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10
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Bright carbon dots as fluorescence sensing agents for bacteria and curcumin. J Colloid Interface Sci 2017; 501:341-349. [DOI: 10.1016/j.jcis.2017.04.045] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 04/10/2017] [Accepted: 04/13/2017] [Indexed: 11/20/2022]
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