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Radoń M. Benchmarks for transition metal spin-state energetics: why and how to employ experimental reference data? Phys Chem Chem Phys 2023; 25:30800-30820. [PMID: 37938035 DOI: 10.1039/d3cp03537a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
Accurate prediction of energy differences between alternative spin states of transition metal complexes is essential in computational (bio)inorganic chemistry-for example, in characterization of spin crossover materials and in the theoretical modeling of open-shell reaction mechanisms-but it remains one of the most compelling problems for quantum chemistry methods. A part of this challenge is to obtain reliable reference data for benchmark studies, as even the highest-level applicable methods are known to give divergent results. This Perspective discusses two possible approaches to method benchmarking for spin-state energetics: using either theoretically computed or experiment-derived reference data. With the focus on the latter approach, an extensive general review is provided for the available experimental data of spin-state energetics and their interpretations in the context of benchmark studies, targeting the possibility of back-correcting the vibrational effects and the influence of solvents or crystalline environments. With a growing amount of experience, these effects can be now not only qualitatively understood, but also quantitatively modeled, providing the way to derive nearly chemically accurate estimates of the electronic spin-state gaps to be used as benchmarks and advancing our understanding of the phenomena related to spin states in condensed phases.
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Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Krakow, Poland.
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2
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Lehnert N, Kim E, Dong HT, Harland JB, Hunt AP, Manickas EC, Oakley KM, Pham J, Reed GC, Alfaro VS. The Biologically Relevant Coordination Chemistry of Iron and Nitric Oxide: Electronic Structure and Reactivity. Chem Rev 2021; 121:14682-14905. [PMID: 34902255 DOI: 10.1021/acs.chemrev.1c00253] [Citation(s) in RCA: 108] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Nitric oxide (NO) is an important signaling molecule that is involved in a wide range of physiological and pathological events in biology. Metal coordination chemistry, especially with iron, is at the heart of many biological transformations involving NO. A series of heme proteins, nitric oxide synthases (NOS), soluble guanylate cyclase (sGC), and nitrophorins, are responsible for the biosynthesis, sensing, and transport of NO. Alternatively, NO can be generated from nitrite by heme- and copper-containing nitrite reductases (NIRs). The NO-bearing small molecules such as nitrosothiols and dinitrosyl iron complexes (DNICs) can serve as an alternative vehicle for NO storage and transport. Once NO is formed, the rich reaction chemistry of NO leads to a wide variety of biological activities including reduction of NO by heme or non-heme iron-containing NO reductases and protein post-translational modifications by DNICs. Much of our understanding of the reactivity of metal sites in biology with NO and the mechanisms of these transformations has come from the elucidation of the geometric and electronic structures and chemical reactivity of synthetic model systems, in synergy with biochemical and biophysical studies on the relevant proteins themselves. This review focuses on recent advancements from studies on proteins and model complexes that not only have improved our understanding of the biological roles of NO but also have provided foundations for biomedical research and for bio-inspired catalyst design in energy science.
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Affiliation(s)
- Nicolai Lehnert
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Eunsuk Kim
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, United States
| | - Hai T Dong
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Jill B Harland
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Andrew P Hunt
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Elizabeth C Manickas
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Kady M Oakley
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, United States
| | - John Pham
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, United States
| | - Garrett C Reed
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Victor Sosa Alfaro
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
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3
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Vlasenko VG, Guda AA, Starikov AG, Chegerev MG, Piskunov AV, Ershova IV, Trigub AL, Tereshchenko AA, Rusalev YV, Kubrin SP, Soldatov AV. Structural Changes in Five‐Coordinate Bromido‐bis(o‐iminobenzo‐semiquinonato)iron(III) Complex: Spin‐Crossover or Ligand‐Metal Antiferromagnetic Interactions? Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202001033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Valery G. Vlasenko
- Research Institute of Physics Southern Federal University 194 Stachki Ave. 344090 Rostov-on-Don Russia
| | - Alexander A. Guda
- The Smart Materials Research Institute Southern Federal University 178/24 A. Sladkova street 344090 Rostov-on-Don Russia
| | - Andrey G. Starikov
- Institute of Physical and Organic Chemistry Southern Federal University 194/2 Stachki Ave. 344090 Rostov-on-Don Russia
| | - Maxim G. Chegerev
- Institute of Physical and Organic Chemistry Southern Federal University 194/2 Stachki Ave. 344090 Rostov-on-Don Russia
| | - Alexander V. Piskunov
- G. A. Razuvaev Institute of Organometallic Chemistry Russian Academy of Sciences 49 Tropinina Str. 603950 Nizhny Novgorod Russia
| | - Irina V. Ershova
- G. A. Razuvaev Institute of Organometallic Chemistry Russian Academy of Sciences 49 Tropinina Str. 603950 Nizhny Novgorod Russia
| | - Alexander L. Trigub
- National Research Center “Kurchatov Institute” 1 pl. Academician Kurchatov 123182 Moscow Russia
| | - Andrei A. Tereshchenko
- The Smart Materials Research Institute Southern Federal University 178/24 A. Sladkova street 344090 Rostov-on-Don Russia
| | - Yurii V. Rusalev
- The Smart Materials Research Institute Southern Federal University 178/24 A. Sladkova street 344090 Rostov-on-Don Russia
| | - Stanislav P. Kubrin
- Research Institute of Physics Southern Federal University 194 Stachki Ave. 344090 Rostov-on-Don Russia
| | - Alexander V. Soldatov
- The Smart Materials Research Institute Southern Federal University 178/24 A. Sladkova street 344090 Rostov-on-Don Russia
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Mörtel M, Lindner T, Scheurer A, Heinemann FW, Khusniyarov MM. Phenanthroline-Based Molecular Switches for Prospective Chemical Grafting: A Synthetic Strategy and Its Application to Spin-Crossover Complexes. Inorg Chem 2019; 59:2659-2666. [PMID: 31509384 DOI: 10.1021/acs.inorgchem.9b01424] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Max Mörtel
- Department of Chemistry and Pharmacy, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Egerlandstraße 1, 91058 Erlangen, Germany
| | - Thomas Lindner
- Department of Chemistry and Pharmacy, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Egerlandstraße 1, 91058 Erlangen, Germany
| | - Andreas Scheurer
- Department of Chemistry and Pharmacy, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Egerlandstraße 1, 91058 Erlangen, Germany
| | - Frank W. Heinemann
- Department of Chemistry and Pharmacy, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Egerlandstraße 1, 91058 Erlangen, Germany
| | - Marat M. Khusniyarov
- Department of Chemistry and Pharmacy, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Egerlandstraße 1, 91058 Erlangen, Germany
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Banerjee A, Li J, Speelman AL, White CJ, Pawlak PL, Brennessel WW, Lehnert N, Chavez FA. A Structural Model for the Iron-Nitrosyl Adduct of Gentisate Dioxygenase. Eur J Inorg Chem 2018; 2018:4797-4804. [PMID: 32577096 DOI: 10.1002/ejic.201800992] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We present the synthesis, properties, and characterization of [Fe(T1Et4iPrIP)(NO)(H2O)2](OTf)2 (1) (T1Et4iPrIP = Tris(1-ethyl-4-isopropyl-imidazolyl)phosphine) as a model for the nitrosyl adduct of gentisate 1,2-dioxygenase (GDO). The further characterization of [Fe(T1Et4iPrIP)(THF)(NO)(OTf)](OTf) (2) which was previously communicated (Inorg. Chem. 2014, 53, 5414) is also presented. The weighted average Fe-N-O angle of 162° for 1 is very close to linear (≥ 165°) for these types of complexes. The coordinated water ligands participate in hydrogen bonding interactions. The spectral properties (EPR, UV-vis, FTIR) for 1 are compared with 2 and found to be quite comparable. Complex 1 closely follows the relationship between the Fe-N-O angle and NO vibrational frequency which was previously identified for 6-coordinate {FeNO}7 complexes. Liquid FTIR studies on 2 indicate that the ν(NO) vibration position is sensitive to solvent shifting to lower energy (relative to the solid) in donor solvent THF and shifting to higher energy in dichloromethane. The basis for this behavior is discussed. The K eq for NO binding in 2 was calculated in THF and found to be 470 M-1. Density functional theory (DFT) studies on 1 indicate donation of electron density to the iron center from the π* orbitals of formally NO-. Such a donation accounts for the near linearity of the Fe-N-O bond and the large ν(NO) value of 1791 cm-1.
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Affiliation(s)
- Atanu Banerjee
- Department of Chemistry, Oakland University, Rochester, MI 48309-4477, USA
| | - Jia Li
- Department of Chemistry, Oakland University, Rochester, MI 48309-4477, USA
| | - Amy L Speelman
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, USA
| | - Corey J White
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, USA
| | - Piotr L Pawlak
- Department of Chemistry, Oakland University, Rochester, MI 48309-4477, USA
| | | | - Nicolai Lehnert
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, USA
| | - Ferman A Chavez
- Department of Chemistry, Oakland University, Rochester, MI 48309-4477, USA
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9
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Wolny JA, Schünemann V, Németh Z, Vankó G. Spectroscopic techniques to characterize the spin state: Vibrational, optical, Mössbauer, NMR, and X-ray spectroscopy. CR CHIM 2018. [DOI: 10.1016/j.crci.2018.10.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Bartual-Murgui C, Diego R, Vela S, Teat SJ, Roubeau O, Aromí G. A Spin-Crossover Molecular Material Describing Four Distinct Thermal Pathways. Inorg Chem 2018; 57:11019-11026. [DOI: 10.1021/acs.inorgchem.8b01625] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Carlos Bartual-Murgui
- Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain
| | - Rosa Diego
- Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona 08007 Barcelona, Spain
| | - Sergi Vela
- Laboratoire de Chimie Quantique, UMR 7177, CNRS-Université de Strasbourg, 4 rue Blaise Pascal, F-67000 Strasbourg, France
| | - Simon J. Teat
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States
| | - Olivier Roubeau
- Instituto de Ciencia de Materiales de Aragón (ICMA), CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - Guillem Aromí
- Departament de Química Inorgànica i Orgànica, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona 08007 Barcelona, Spain
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Wang JL, Liu Q, Meng YS, Zheng H, Zhu HL, Shi Q, Liu T. Synergic on/off Photoswitching Spin State and Magnetic Coupling between Spin Crossover Centers. Inorg Chem 2017; 56:10674-10680. [PMID: 28812903 DOI: 10.1021/acs.inorgchem.7b01633] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Jun-Li Wang
- State Key Laboratory
of Fine Chemicals, Dalian University of Technology, 2 Linggong
Rd., 116024 Dalian, China
| | - Qiang Liu
- State Key Laboratory
of Fine Chemicals, Dalian University of Technology, 2 Linggong
Rd., 116024 Dalian, China
| | - Yin-Shan Meng
- State Key Laboratory
of Fine Chemicals, Dalian University of Technology, 2 Linggong
Rd., 116024 Dalian, China
| | - Hui Zheng
- Thermochemistry Laboratory, Liaoning Province
Key Laboratory of Thermochemistry for Energy and Materials, Dalian
National Laboratory for Clean Energy, Dalian Institute of Chemical
Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Hai-Lang Zhu
- State Key Laboratory
of Fine Chemicals, Dalian University of Technology, 2 Linggong
Rd., 116024 Dalian, China
| | - Quan Shi
- Thermochemistry Laboratory, Liaoning Province
Key Laboratory of Thermochemistry for Energy and Materials, Dalian
National Laboratory for Clean Energy, Dalian Institute of Chemical
Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Tao Liu
- State Key Laboratory
of Fine Chemicals, Dalian University of Technology, 2 Linggong
Rd., 116024 Dalian, China
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Flores-Leonar MM, Moreno-Esparza R, Ugalde-Saldívar VM, Amador-Bedolla C. Correlating Properties in Iron(III) Complexes: A DFT Description of Structure, Redox Potential and Spin Crossover Phenomena. ChemistrySelect 2017. [DOI: 10.1002/slct.201700547] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Martha M. Flores-Leonar
- Facultad de Química (UNAM); Edificio B; Av. Universidad 3000, Coyoacán Ciudad de México 04510 México
| | - Rafael Moreno-Esparza
- Facultad de Química (UNAM); Edificio B; Av. Universidad 3000, Coyoacán Ciudad de México 04510 México
| | - Víctor M. Ugalde-Saldívar
- Facultad de Química (UNAM); Edificio B; Av. Universidad 3000, Coyoacán Ciudad de México 04510 México
| | - Carlos Amador-Bedolla
- Facultad de Química (UNAM); Edificio B; Av. Universidad 3000, Coyoacán Ciudad de México 04510 México
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