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Electronic structure of PH2− containing complexes as photoelectron spectroscopy candidates. COMPUT THEOR CHEM 2023. [DOI: 10.1016/j.comptc.2023.114054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Schreiber RE, Goicoechea JM. Phosphine Carboxylate-Probing the Edge of Stability of a Carbon Dioxide Adduct with Dihydrogenphosphide. Angew Chem Int Ed Engl 2021; 60:3759-3767. [PMID: 33135848 DOI: 10.1002/anie.202013914] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Indexed: 11/08/2022]
Abstract
We present a new adduct of carbon dioxide with dihydrogenphosphide, that may be prepared either by direct reaction of NaPH2 with carbon dioxide or by hydrolysis of the phosphaethynolate ion (PCO- ). In this hydrolysis transformation, a new mechanism is proposed for the electrophilic reactivity of the phosphaethynolate ion. Protonation to form phosphine carboxylic acid (PH2 COOH) and functionalization to form esters is shown to increase the strength of the P-C interaction, allowing for comparisons to be drawn between this species and the analogous carbamic (NH2 COOH) and carbonic acids (H2 CO3 ). Functionalization of the oxygen atom is found to stabilize the phosphine carboxylate while also allowing solubility in organic solvents whereas phosphorus functionalization is shown to facilitate decarboxylation. Substituent migration occurs in some cases.
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Affiliation(s)
- Roy E Schreiber
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Jose M Goicoechea
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
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Schreiber RE, Goicoechea JM. Phosphine Carboxylate—Probing the Edge of Stability of a Carbon Dioxide Adduct with Dihydrogenphosphide. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202013914] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Roy E. Schreiber
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Jose M. Goicoechea
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
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Thomas DA, Mucha E, Lettow M, Meijer G, Rossi M, von Helden G. Characterization of a trans-trans Carbonic Acid-Fluoride Complex by Infrared Action Spectroscopy in Helium Nanodroplets. J Am Chem Soc 2019; 141:5815-5823. [PMID: 30883095 PMCID: PMC6727381 DOI: 10.1021/jacs.8b13542] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
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The high Lewis basicity
and small ionic radius of fluoride promote
the formation of strong ionic hydrogen bonds in the complexation of
fluoride with protic molecules. Herein, we report that carbonic acid,
a thermodynamically disfavored species that is challenging to investigate
experimentally, forms a complex with fluoride in the gas phase. Intriguingly,
this complex is highly stable and is observed in abundance upon nanoelectrospray
ionization of an aqueous sodium fluoride solution in the presence
of gas-phase carbon dioxide. We characterize the structure and properties
of the carbonic acid–fluoride complex, F–(H2CO3), and its deuterated isotopologue, F–(D2CO3), by helium nanodroplet
infrared action spectroscopy in the photon energy range of 390–2800
cm–1. The complex adopts a C2v symmetry structure with the carbonic acid
in a planar trans–trans conformation and both OH groups forming
ionic hydrogen bonds with the fluoride. Substantial vibrational anharmonic
effects are observed in the infrared spectra, most notably a strong
blue shift of the symmetric hydrogen stretching fundamental relative
to predictions from the harmonic approximation or vibrational second-order
perturbation theory. Ab initio thermostated ring-polymer molecular
dynamics simulations indicate that this blue shift originates from
strong coupling between the hydrogen stretching and bending vibrations,
resulting in an effective weakening of the OH···F– ionic hydrogen bonds.
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Affiliation(s)
- Daniel A Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Maike Lettow
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Mariana Rossi
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
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Abstract
A theoretical study of the substituent and solvent effects on the reaction of phosphines with CO2 has been carried out by means of Møller-Plesset (MP2) computational level calculations and continuum polarizable method (PCM) solvent models. Three stationary points along the reaction coordinate have been characterized, a pre-transition state (TS) assembly in which a pnicogen bond or tetrel bond is established between the phosphine and the CO2 molecule, followed by a transition state, and leading finally to the adduct in which the P–C bond has been formed. The solvent effects on the stability and geometry of the stationary points are different. Thus, the pnicogen bonded complexes are destabilized as the dielectric constant of the solvent increases while the opposite happens within the adducts with the P–C bond and the TSs trend. A combination of the substituents and solvents can be used to control the most stable minimum.
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Murillo F, Barroso J, de los Santos MG, Ávila G, Pan S, Fernández-Herrera MA, Merino G. Revisiting the Formation Mechanism of 1,3,4-Oxadiazole-2(3H)-ones from Hydrazonyl Chloride and Carbon Dioxide. J Org Chem 2018; 83:13045-13050. [DOI: 10.1021/acs.joc.8b01676] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Fernando Murillo
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, 97310 Mérida, Yucatán, México
- DACB, Universidad Juárez Autónoma de Tabasco, A.P. 24 C.P. 86690, Cunduacán Tab., México
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, 97310 Mérida, Yucatán, México
| | - María G. de los Santos
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, 97310 Mérida, Yucatán, México
- DACB, Universidad Juárez Autónoma de Tabasco, A.P. 24 C.P. 86690, Cunduacán Tab., México
| | - Gustavo Ávila
- Facultad de Química, Universidad Nacional Autónoma de México, México Distrito Federal 04510, México
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing 210028, China
| | - María A. Fernández-Herrera
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, 97310 Mérida, Yucatán, México
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, 97310 Mérida, Yucatán, México
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Thomas DA, Mucha E, Gewinner S, Schöllkopf W, Meijer G, von Helden G. Vibrational Spectroscopy of Fluoroformate, FCO 2-, Trapped in Helium Nanodroplets. J Phys Chem Lett 2018; 9:2305-2310. [PMID: 29669208 DOI: 10.1021/acs.jpclett.8b00664] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Fluoroformate, also known as carbonofluoridate, is an intriguing molecule readily formed by the reductive derivatization of carbon dioxide. In spite of its well-known stability, a detailed structural characterization of the isolated anion has yet to be reported. Presented in this work is the vibrational spectrum of fluoroformate obtained by infrared action spectroscopy of ions trapped in helium nanodroplets, the first application of this technique to a molecular anion. The experimental method yields narrow spectral lines, providing experimental constraints on the structure that can be accurately reproduced using high-level ab initio methods. In addition, two notable Fermi resonances between a fundamental and combination band are observed. The electrostatic potential map of fluoroformate reveals substantial charge density on fluorine as well as on the oxygen atoms, suggesting multiple sites for interaction with hydrogen bond donors and electrophiles, which may in turn lead to intriguing solvation structures and reaction pathways.
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Affiliation(s)
- Daniel A Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Sandy Gewinner
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Wieland Schöllkopf
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
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Varandas AJC, Martínez González M, Montero-Cabrera LA, Garcia de la Vega JM. Assessing How Correlated Molecular Orbital Calculations Can Perform versus Kohn-Sham DFT: Barrier Heights/Isomerizations. Chemistry 2017; 23:9122-9129. [PMID: 28380281 DOI: 10.1002/chem.201700928] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Indexed: 11/06/2022]
Abstract
To assess the title issue, 38 hydrogen transfer barrier heights and 38 non-hydrogen transfer barrier heights/isomerizations extracted from extensive databases have been considered, in addition to 4 2 p-isomerization reactions and 6 others for large organic molecules. All Kohn-Sham DFT calculations have employed the popular M06-2X functional, whereas the correlated molecular orbital (MO)-based ones are from single-reference MP2 and CCSD(T) methods. They have all utilized the same basis sets, with raw MO energies subsequently extrapolated to the complete basis set limit without additional cost. MP2 calculations are found to be as cost-effective as DFT ones and often slightly more, while showing a satisfactory accuracy when compared with the reference data. Although the focus is on barrier heights, the results may bear broader implications, in that one may see successes and difficulties of DFT when compared with traditional MO theories for the same data.
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Affiliation(s)
- António J C Varandas
- Departamento de Química, and Centro de Química, Universidade de Coimbra, 3004-535, Coimbra, Portugal
| | - Marco Martínez González
- Departamento de Química, and Centro de Química, Universidade de Coimbra, 3004-535, Coimbra, Portugal.,Universidad de La Habana, Facultad de Química, calle San Lázaro sn., 10400, La Habana, Cuba
| | - Luis A Montero-Cabrera
- Universidad de La Habana, Facultad de Química, calle San Lázaro sn., 10400, La Habana, Cuba
| | - José M Garcia de la Vega
- Departamento de Química, and Centro de Química, Universidade de Coimbra, 3004-535, Coimbra, Portugal.,Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049, Madrid, Spain
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Kumar Deb D, Sarkar B. Theoretical investigation of gas-phase molecular complex formation between 2-hydroxy thiophenol and a water molecule. Phys Chem Chem Phys 2017; 19:2466-2478. [DOI: 10.1039/c6cp08442g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A systematic study of the interaction energies and hydrogen bonding interaction of a gas-phase molecular complex between 2-hydroxy thiophenol and a water molecule.
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Affiliation(s)
- Debojit Kumar Deb
- Department of Chemistry
- Centre for Advanced Studies
- North-Eastern Hill University
- Shillong 793022
- India
| | - Biplab Sarkar
- Department of Chemistry
- Centre for Advanced Studies
- North-Eastern Hill University
- Shillong 793022
- India
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