Self-Assembly Process of a Pd2 L4 Capsule: Steric Interactions between Neighboring Components Favor the Formation of Large Intermediates

Theoretical and computational methodologies for understanding coordination self-assembly complexes

This perspective highlights three theoretical and computational methods to capture the coordination self-assembly processes at the molecular level: quantum chemical modeling, molecular dynamics, and reaction network analysis. These methods cover the different scales from the metal-ligand bond to a more global aspect, and approaches that are best suited to understand the coordination self-assembly from different perspectives are introduced. Theoretical and numerical researches based on these methods are not merely ways of interpreting the experimental studies but complementary to them.

Dynamic Open Coordination Cage from Nonsymmetrical Imidazole-Pyridine Ditopic Ligands for Turn-On/Off Anion Binding

This work demonstrates a new nonconventional ligand design, imidazole/pyridine-based nonsymmetrical ditopic ligands (1 and 1^S ), to construct a dynamic open coordination cage from nonsymmetrical building blocks. Upon complex formation with Pd²⁺ at a 1:4 molar ratio, 1 and 1^S initially form mononuclear PdL₄ complexes (Pd²⁺ (1)₄ and Pd²⁺ (1^S )₄ ) without formation of a cage. The PdL₄ complexes undergo a stoichiometrically controlled structural transition to Pd₂ L₄ open cages ((Pd²⁺ )₂ (1)₄ and (Pd²⁺ )₂ (1^S )₄ ) capable of anion binding, leading to turn-on anion binding. The structural transitions between the Pd₂ L₄ open cage and the PdL₄ complex are reversible. Thus, stoichiometric addition (2 equiv) of free 1^S to the (Pd²⁺ )₂ (1^S )₄ open cage holding a guest anion ((Pd²⁺ )₂ (1^S )₄ ⋅G^- ) enables the structural transition to the Pd²⁺ (1^S )₄ complex, which does not have a cage and thus causes the release of the guest anion (Pd²⁺ (1^S )₄ +G^- ).

A stochastic model study on the self-assembly process of a Pd2L4 cage consisting of rigid ditopic ligands

Numerical analysis considering explicit conformational difference revealed the self-assembly process of a Pd₂L₄ cage containing rigid ditopic ligands.