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Alonso M, Bettens T, Eeckhoudt J, Geerlings P, De Proft F. Wandering through quantum-mechanochemistry: from concepts to reactivity and switches. Phys Chem Chem Phys 2023; 26:21-35. [PMID: 38086672 DOI: 10.1039/d3cp04907h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2023]
Abstract
Mechanochemistry has experienced a renaissance in recent years witnessing, at the molecular level, a remarkable interplay between theory and experiment. Molecular mechanochemistry has welcomed a broad spectrum of quantum-chemical methods to evaluate the influence of an external mechanical force on molecular properties. In this contribution, an overview is given on recent work on quantum mechanochemistry in the Brussels Quantum Chemistry group (ALGC). The effect of an external force was scrutinized both in fundamental topics, like reactivity descriptors in Conceptual DFT, and in applied topics, such as designing molecular force probes and tuning the stereoselectivity of certain types of reactions. In the conceptual part, a brief overview of the techniques introducing mechanical forces into a quantum-mechanical description of a molecule is followed by an introduction to conceptual DFT. The evolution of the electronic chemical potential (or electronegativity), chemical hardness and electrophilicity are investigated when a chemical bond in a series of diatomics is put under mechanical stress. Its counterpart, the influence of mechanical stress on bond angles, is analyzed by varying the strain present in alkyne triple bonds by applying a bending force, taking the strain promoted alkyne-azide coupling cycloaddition as an example. The increase of reactivity of the alkyne upon bending is probed by Fukui functions and the local softness. In the applied part, a new molecular force probe is presented based on an intramolecular 6π-electrocyclization in constrained polyenes operating under thermal conditions. A cyclic process is conceived where ring opening and closure are triggered by applying or removing an external pulling force. The efficiency of mechanical activation strongly depends on the magnitude of the applied force and the distance between the pulling points. The idea of pulling point distances as a tool to identify new mechanochemical processes is then tested in [28]hexaphyrins with an intricate equilibrium between Möbius aromatic and Hückel antiaromatic topologies. A mechanical force is shown to trigger the interconversion between the two topologies, using the distance matrix as a guide to select appropriate pulling points. In a final application, the Felkin-Anh model for the addition of nucleophiles to chiral carbonyls under the presence of an external mechanical force is scrutinized. By applying a force for restricting the conformational freedom of the chiral ketone, otherwise inaccessible reaction pathways are promoted on the force-modified potential energy surfaces resulting in a diastereoselectivity different from the force-free reaction.
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Affiliation(s)
- Mercedes Alonso
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium.
| | - Tom Bettens
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium.
| | - Jochen Eeckhoudt
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium.
| | - Paul Geerlings
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium.
| | - Frank De Proft
- Eenheid Algemene Chemie (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussels, Belgium.
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Kumar S, Zeller F, Stauch T. A Two-Step Baromechanical Cycle for Repeated Activation and Deactivation of Mechanophores. J Phys Chem Lett 2021; 12:9470-9474. [PMID: 34558899 DOI: 10.1021/acs.jpclett.1c02641] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Mechanophores that are embedded in a polymer backbone respond to the application of mechanical stretching forces by geometric changes such as bond rupture. Typically, these structural changes are irreversible, which limits the applicability of functional materials incorporating mechanophores. Using computational methods, we, here, present a general method of restoring a force-activated mechanophore to its deactivated form by using hydrostatic pressure. We use the spiropyran-merocyanine (SP-MC) interconversion to show that repeated activation of the SP mechanophore and deactivation of MC can be achieved by alternating mechanical stretching and hydrostatic compression, respectively. In the baromechanical cycle, MC acts as a "barophore" that responds to hydrostatic pressure by bond formation. The activation and deactivation of SP/MC are understood in terms of strain and electronic effects. Beneficially, this two-step baromechanical cycle can be observed in real time by using UV/vis spectroscopy. Our calculations pave the way for improving the applicability and reusability of force-responsive materials.
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Affiliation(s)
- Sourabh Kumar
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Felix Zeller
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Tim Stauch
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße NW2, D-28359 Bremen, Germany
- Bremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany
- MAPEX Center for Materials and Processes, University of Bremen, Bibliothekstraße 1, D-28359 Bremen, Germany
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Plasser F, Glöcklhofer F. Visualisation of Chemical Shielding Tensors (VIST) to Elucidate Aromaticity and Antiaromaticity. European J Org Chem 2021; 2021:2529-2539. [PMID: 34248413 PMCID: PMC8251739 DOI: 10.1002/ejoc.202100352] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 04/01/2021] [Indexed: 01/25/2023]
Abstract
Aromaticity is a central concept in chemistry, pervading areas from biochemistry to materials science. Recently, chemists also started to exploit intricate phenomena such as the interplay of local and global (anti)aromaticity or aromaticity in non-planar systems and three dimensions. These phenomena pose new challenges in terms of our fundamental understanding and the practical visualisation of aromaticity. To overcome these challenges, a method for the visualisation of chemical shielding tensors (VIST) is developed here that allows for a 3D visualisation with quantitative information about the local variations and anisotropy of the chemical shielding. After exemplifying the method in different planar hydrocarbons, we study two non-planar macrocycles to show the unique benefits of the VIST method for molecules with competing π-conjugated systems and conclude with a norcorrole dimer showing clear evidence of through-space aromaticity. We believe that the VIST method will be a highly valuable addition to the computational toolbox.
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Affiliation(s)
- Felix Plasser
- Department of ChemistryLoughborough UniversityLoughboroughLE11 3TUUnited Kingdom
| | - Florian Glöcklhofer
- Department of Chemistry andCentre for Processable ElectronicsImperial College LondonMolecular Sciences Research HubLondonW12 0BZUnited Kingdom
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Kumar S, Stauch T. The activation efficiency of mechanophores can be modulated by adjacent polymer composition. RSC Adv 2021; 11:7391-7396. [PMID: 35423252 PMCID: PMC8695044 DOI: 10.1039/d0ra09834e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 02/05/2021] [Indexed: 11/21/2022] Open
Abstract
The activation efficiency of mechanophores in stress-responsive polymers is generally limited by the competing process of unspecific scission in other parts of the polymer chain. Here it is shown that the linker between the mechanophore and the polymer backbone determines the force required to activate the mechanophore. Using quantum chemical methods, it is demonstrated that the activation forces of three mechanophores (Dewar benzene, benzocyclobutene and gem-dichlorocyclopropane) can be adjusted over a range of almost 300% by modifying the chemical composition of the linker. The results are discussed in terms of changes in electron density, strain distribution and structural parameters during the rupture process. Using these findings it is straightforward to either significantly enhance or reduce the activation rate of mechanophores in stress-responsive materials, depending on the desired use case. The methodology is applied to switch a one-step "gating" of a mechanochemical transformation to a two-step process.
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Affiliation(s)
- Sourabh Kumar
- University of Bremen, Institute for Physical and Theoretical Chemistry Leobener Straße NW2 D-28359 Bremen Germany
| | - Tim Stauch
- University of Bremen, Institute for Physical and Theoretical Chemistry Leobener Straße NW2 D-28359 Bremen Germany
- Bremen Center for Computational Materials Science, University of Bremen Am Fallturm 1 D-28359 Bremen Germany
- MAPEX Center for Materials and Processes, University of Bremen Bibliothekstraße 1 D-28359 Bremen Germany
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Mier LJ, Adam G, Kumar S, Stauch T. The Mechanism of Flex-Activation in Mechanophores Revealed By Quantum Chemistry. Chemphyschem 2020; 21:2402-2406. [PMID: 32964598 PMCID: PMC7702058 DOI: 10.1002/cphc.202000739] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Indexed: 12/11/2022]
Abstract
Flex-activated mechanophores can be used for small-molecule release in polymers under tension by rupture of covalent bonds that are orthogonal to the polymer main chain. Using static and dynamic quantum chemical methods, we here juxtapose three different mechanical deformation modes in flex-activated mechanophores (end-to-end stretching, direct pulling of the scissile bonds, bond angle bendings) with the aim of proposing ways to optimize the efficiency of flex-activation in experiments. It is found that end-to-end stretching, which is a traditional approach to activate mechanophores in polymers, does not trigger flex-activation, whereas direct pulling of the scissile bonds or displacement of adjacent bond angles are efficient methods to achieve this goal. Based on the structural, energetic and electronic effects responsible for these observations, we propose ways of weakening the scissile bonds experimentally to increase the efficiency of flex-activation.
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Affiliation(s)
- Lennart J. Mier
- University of BremenInstitute for Physical and Theoretical ChemistryLeobener Straße NW2D-28359BremenGermany
- Current address: University of Bremen, UFTLeobener Str. 6D-28359BremenGermany
| | - Gheorghe Adam
- University of BremenInstitute for Physical and Theoretical ChemistryLeobener Straße NW2D-28359BremenGermany
| | - Sourabh Kumar
- University of BremenInstitute for Physical and Theoretical ChemistryLeobener Straße NW2D-28359BremenGermany
| | - Tim Stauch
- University of BremenInstitute for Physical and Theoretical ChemistryLeobener Straße NW2D-28359BremenGermany
- University of BremenBremen Center for Computational Materials ScienceAm Fallturm 1D-28359BremenGermany
- University of BremenMAPEX Center for Materials and ProcessesBibliothekstraße 1D-28359BremenGermany
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Scheurer M, Dreuw A, Head-Gordon M, Stauch T. The rupture mechanism of rubredoxin is more complex than previously thought. Chem Sci 2020; 11:6036-6044. [PMID: 34094096 PMCID: PMC8159389 DOI: 10.1039/d0sc02164d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The surprisingly low rupture force and remarkable mechanical anisotropy of rubredoxin have been known for several years. Exploiting the first combination of steered molecular dynamics and the quantum chemical Judgement of Energy DIstribution (JEDI) analysis, the common belief that hydrogen bonds between neighboring amino acid backbones and the sulfur atoms of the central FeS4 unit in rubredoxin determine the low mechanical resistance of the protein is invalidated. The distribution of strain energy in the central part of rubredoxin is elucidated in real-time with unprecedented detail, giving important insights into the mechanical unfolding pathway of rubredoxin. While structural anisotropy as well as the contribution of angle bendings in the FeS4 unit have a significant influence on the mechanical properties of rubredoxin, these factors are insufficient to explain the experimentally observed low rupture force. Instead, the rupture mechanism of rubredoxin is far more complex than previously thought and requires more than just a hydrogen bond network.
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Affiliation(s)
- Maximilian Scheurer
- Interdisciplinary Center for Scientific ComputingIm Neuenheimer Feld 20569120 HeidelbergGermany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific ComputingIm Neuenheimer Feld 20569120 HeidelbergGermany
| | - Martin Head-Gordon
- Department of Chemistry, University of CaliforniaBerkeleyCalifornia 94720USA,Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of CaliforniaBerkeleyCalifornia 94720USA
| | - Tim Stauch
- University of Bremen, Institute for Physical and Theoretical ChemistryLeobener Straße NW2D-28359 BremenGermany,Bremen Center for Computational Materials Science, University of BremenAm Fallturm 1D-28359 BremenGermany,MAPEX Center for Materials and Processes, University of BremenBibliothekstraße 1D-28359 BremenGermany
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Stauch T, Chakraborty R, Head-Gordon M. Quantum Chemical Modeling of Pressure-Induced Spin Crossover in Octahedral Metal-Ligand Complexes. Chemphyschem 2019; 20:2742-2747. [PMID: 31538686 PMCID: PMC6899727 DOI: 10.1002/cphc.201900853] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 09/19/2019] [Indexed: 11/12/2022]
Abstract
Spin state switching on external stimuli is a phenomenon with wide applicability, ranging from molecular electronics to gas activation in nanoporous frameworks. Here, we model the spin crossover as a function of the hydrostatic pressure in octahedrally coordinated transition metal centers by applying a field of effective nuclear forces that compress the molecule towards its centroid. For spin crossover in first-row transition metals coordinated by hydrogen, nitrogen, and carbon monoxide, we find the pressure required for spin transition to be a function of the ligand position in the spectrochemical sequence. While pressures on the order of 1 GPa are required to flip spins in homogeneously ligated octahedral sites, we demonstrate a fivefold decrease in spin transition pressure for the archetypal strong field ligand carbon monoxide in octahedrally coordinated Fe2+ in [Fe(II)(NH3 )5 CO]2+ .
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Affiliation(s)
- Tim Stauch
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Str. NW2, 28359, Bremen, Germany.,Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California, 94720, United States of America
| | - Romit Chakraborty
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California, 94720, United States of America.,Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United States of America
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California, 94720, United States of America.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, 94720, United States of America
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