1
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Li TR, Das C, Cornu I, Prescimone A, Piccini G, Tiefenbacher K. Window[1]resorcin[3]arenes: A Novel Macrocycle Able to Self-Assemble to a Catalytically Active Hexameric Cage. JACS AU 2024; 4:1901-1910. [PMID: 38818056 PMCID: PMC11134363 DOI: 10.1021/jacsau.4c00097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/16/2024] [Accepted: 04/16/2024] [Indexed: 06/01/2024]
Abstract
The hexameric resorcin[4]arene capsule has been utilized as one of the most versatile supramolecular capsule catalysts. Enlarging its size would enable expansion of the substrate size scope. However, no larger catalytically active versions have been reported. Herein, we introduce a novel class of macrocycles, named window[1]resorcin[3]arene (wRS), that assemble to a cage-like hexameric host. The new host was studied by NMR, encapsulation experiments, and molecular dynamics simulations. The cage is able to bind tetraalkylammonium ions that are too large for encapsulation inside the hexameric resorcin[4]arene capsule. Most importantly, it retained its catalytic activity, and the accelerated conversion of a large substrate that does not fit the closed hexameric resorcin[4]arene capsule was observed. Thus, it will help to expand the limited substrate size scope of the closed hexameric resorcin[4]arene capsule.
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Affiliation(s)
- Tian-Ren Li
- Department
of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Chintu Das
- Institute
of Technical and Macromolecular Chemistry RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
| | - Ivan Cornu
- Department
of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Alessandro Prescimone
- Department
of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - GiovanniMaria Piccini
- Institute
of Technical and Macromolecular Chemistry RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
| | - Konrad Tiefenbacher
- Department
of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
- Department
of Biosystems Science and Engineering, ETH
Zurich, Mattenstrasse
26, 4058 Basel, Switzerland
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2
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Ferrino G, De Rosa M, Della Sala P, Gaeta C, Talotta C, Soriente A, Cao Z, Maity B, Cavallo L, Neri P. The Resorcinarene Hexameric Capsule as a Supramolecular Photoacid to Trigger Olefin Hydroarylation in Confined Space. Chemistry 2024; 30:e202303678. [PMID: 38373184 DOI: 10.1002/chem.202303678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 02/07/2024] [Accepted: 02/19/2024] [Indexed: 02/21/2024]
Abstract
The self-assembled resorcinarene capsule C6 shows remarkable photoacidity upon light irradiation, which is here exploited to catalyze olefin hydroarylation reactions in confined space. An experimental pKa* value range of -3.3--2.8 was estimated for the photo-excited hexameric capsule C6*, and consequently an increase in acidity of 8.8 log units was observed with respect to its ground state (pKa=5.5-6.0). This makes the hexameric capsule the first example of a self-assembled supramolecular photoacid. The photoacid C6* can catalyze hydroarylation reaction of olefins with aromatic substrates inside its cavity, while no reaction occurred between them in the absence of irradiation and/or capsule. DFT calculations corroborated a mechanism in which the photoacidity of C6* plays a crucial role in the protonation step of the aromatic substrate. A further proton transfer to olefin with a concomitant C-C bond formation and a final deprotonation step lead to product releasing.
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Affiliation(s)
- Giuseppina Ferrino
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Zhen Cao
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Bholanath Maity
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Placido Neri
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
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3
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Lorenzetto T, Bordignon F, Munarin L, Mancin F, Fabris F, Scarso A. Substrate Selectivity Imparted by Self-Assembled Molecular Containers and Catalysts. Chemistry 2024; 30:e202301811. [PMID: 37466005 DOI: 10.1002/chem.202301811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 07/14/2023] [Accepted: 07/17/2023] [Indexed: 07/20/2023]
Abstract
Recent trends in catalysis are devoted to mimicking some peculiar features of enzymes like site selectivity, through functional group recognition, and substrate selectivity, through recognition of the entire surface of the substrate. The latter is a specific feature of enzymes that is seldomly present in homogeneous catalysis. Supramolecular catalysis, thanks to the self-assembly of simple subunits, enables the creation of cavities and surfaces whose confinement effects drive the preferential binding of a substrate among others with consequent substrate selectivity. The topic is an emerging field that exploits recognition phenomena to discriminate the reagents based on their size and shape. This review deals this cutting-edge field of research covering examples of supramolecular self-assembled molecular containers and catalysts operating in organic as well as aqueous media, with special emphasis for catalytic systems dealing with direct competitive experiments involving two or more substrates.
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Affiliation(s)
- Tommaso Lorenzetto
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Via Torino 155, Venezia Mestre, 30172, Italy
| | - Francesca Bordignon
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Via Torino 155, Venezia Mestre, 30172, Italy
- Dipartimento di Scienze Chimiche, Università degli studi di Padova, via Marzolo 1, Padova, 35100, Italy
| | - Luca Munarin
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Via Torino 155, Venezia Mestre, 30172, Italy
| | - Fabrizio Mancin
- Dipartimento di Scienze Chimiche, Università degli studi di Padova, via Marzolo 1, Padova, 35100, Italy
| | - Fabrizio Fabris
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Via Torino 155, Venezia Mestre, 30172, Italy
| | - Alessandro Scarso
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Via Torino 155, Venezia Mestre, 30172, Italy
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4
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Cornu I, Syntrivanis LD, Tiefenbacher K. Biomimetic tail-to-head terpene cyclizations using the resorcin[4]arene capsule catalyst. Nat Protoc 2024; 19:313-339. [PMID: 38040980 DOI: 10.1038/s41596-023-00919-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 09/18/2023] [Indexed: 12/03/2023]
Abstract
The tail-to-head terpene (THT) cyclization is a biochemical process that gives rise to many terpene natural product skeletons encountered in nature. Historically, it has been difficult to achieve THT synthetically without using an enzyme. In this protocol, a hexameric resorcin[4]arene capsule acts as an artificial enzyme mimic to carry out biomimetic THT cyclizations and related carbocationic rearrangements. The precursor molecule bears a leaving group (usually an alcohol or acetate group) and undergoes the THT reaction in the presence of the capsule catalyst and HCl as a cocatalyst. Careful control of several parameters (including water content, amount of HCl cocatalyst, temperature and solvent) is crucial to successfully carrying out the reaction. To facilitate the application of this unique capsule-catalysis methodology, we therefore developed a very detailed procedure that includes the preparation and analysis of all reaction components. In this protocol, we describe how to prepare two different terpenes: isolongifolene and presilphiperfolan-1β-ol. The two procedures differ in the water content required for efficient product formation, and thus exemplify the two common use cases of this methodology. The influence of other crucial reaction parameters and means of precisely controlling them are described. A commercially available substrate, nerol, can be used as simple test substrate to validate the reaction setup. Each synthetic procedure requires 5-7 d, including 1-5 h of hands-on time. The protocol applies to the synthesis of many complex terpene natural products that would otherwise be difficult to access in synthetically useful yields.
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Affiliation(s)
- Ivan Cornu
- Department of Chemistry, University of Basel, Basel, Switzerland
| | | | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Basel, Switzerland.
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
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5
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Stares DL, Szumna A, Schalley CA. Encapsulation in Charged Droplets Generates Distorted Host-Guest Complexes. Chemistry 2023; 29:e202302112. [PMID: 37724745 DOI: 10.1002/chem.202302112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 09/18/2023] [Accepted: 09/19/2023] [Indexed: 09/21/2023]
Abstract
The ability of various hydrogen-bonded resorcinarene-based capsules to bind α,ω-alkylbisDABCOnium (DnD) guests of different lengths was investigated in solution and in the gas-phase. While no host-guest interactions were detected in solution, encapsulation could be achieved in the charged droplets formed during electrospray ionisation (ESI). This included guests, which are far too long in their most stable conformation to fit inside the cavity of the capsules. A combination of three mass spectrometric techniques, namely, collision-induced dissociation, hydrogen/deuterium exchange, and ion-mobility mass spectrometry, together with computational modelling allow us to determine the binding mode of the DnD guests inside the cavity of the capsules. Significant distortions of the guest into horseshoe-like arrangements are required to optimise cation-π interactions with the host, which also adopt distorted geometries with partially open hydrogen-bonding seams when binding longer guests. Such quasi "spring-loaded" capsules can form in the charged droplets during the ESI process as there is no competition between guest encapsulation and ion pair formation with the counterions that preclude encapsulation in solution. The encapsulation complexes are sufficiently stable in the gas-phase - even when strained - because non-covalent interactions significantly strengthen in the absence of solvent.
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Affiliation(s)
- Daniel L Stares
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
| | - Agnieszka Szumna
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw, Poland
| | - Christoph A Schalley
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 20, 14195, Berlin, Germany
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6
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Schmid D, Li TR, Goldfuss B, Tiefenbacher K. Exploring the Glycosylation Reaction Inside the Resorcin[4]arene Capsule. J Org Chem 2023; 88:14515-14526. [PMID: 37796244 DOI: 10.1021/acs.joc.3c01547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
In the past decade, there has been an increased interest in applying supramolecular capsule and cage catalysis to the current challenges in synthetic organic chemistry. In this context, we recently reported the resorcin[4]arene capsule-catalyzed conversion of α-glycosyl halides into β-glycosides with high selectivity. Interestingly, this methodology enabled the formation of a wide range of β-pyranosides as well as β-furanosides, although these two donor classes exhibit different reactivities and usually require different reaction conditions and catalysts. Evidence was provided that a proton wire plays a key role in this reaction by enabling dual activation of the glycosyl donor and acceptor. Here, we describe a detailed investigation of several aspects of this reactivity. Besides a mechanistic study, we elucidated the size limitation, the origin of catalytic turnover, and the electrophile scope of nonglycosylic halides. Moreover, a screening of the sensitivity to changes in the reaction conditions provides guidelines to facilitate reproducibility. Furthermore, we demonstrate the compatibility with environmentally benign solvent alternatives, including the renewable solvent limonene.
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Affiliation(s)
- Dario Schmid
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Tian-Ren Li
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Bernd Goldfuss
- Institut für Organische Chemie, Universität zu Köln, Greinstrasse 4, 50939 Köln, Germany
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
- Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 24, 4058 Basel, Switzerland
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7
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Kumar P, Mani Kandan VBR, Balakrishnan P, Antharjanam PKS, Parthasarathy V. Leveraging Torsional and Steric Strains: A Pre-macrocyclization Strategy Enables Conformation-Specific Fullerene Binding in m-Cyclophanes. Angew Chem Int Ed Engl 2023; 62:e202305005. [PMID: 37170481 DOI: 10.1002/anie.202305005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 05/10/2023] [Accepted: 05/11/2023] [Indexed: 05/13/2023]
Abstract
Though the chemistry of resorcinarenes is half a century old, the conformationally-locked resorcinarene crowns are generally constructed using hydrogen bonds or covalent tethers. Often, covalent tethering involves extra post-macrocyclization steps involving upper-rim functionalities. We have leveraged the torsional and steric strains through α-substituents of the lower-rim C-alkyl chains and accomplished conformationally-rigid fluorescent m-cyclophane deep-crowns in a predetermined way. The strategy offers a pre-macrocyclization route conserving upper-rim functionalities, an aspect overlooked in resorcinarene chemistry. X-ray structural and computational analyses unveil the cause for conformational rigidity in m-cyclophanes due to α-branching in C-alkyls (linear vs. α-/β-branched). The conformationally-locked fluorescent deep-crown with a preorganized cavity captures hydrophobic spherical guest C60 in both solution and solid states specifically, when compared to conformationally-dynamic boats, enabling conformation-specific binding.
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Affiliation(s)
- Pawan Kumar
- Department of Chemistry, Indian Institute of Technology Madras, 600036, Chennai, Tamil Nadu, India
| | - V B Raja Mani Kandan
- Department of Chemistry, Indian Institute of Technology Madras, 600036, Chennai, Tamil Nadu, India
| | - Prabukumar Balakrishnan
- Department of Chemistry, Indian Institute of Technology Madras, 600036, Chennai, Tamil Nadu, India
| | - P K Sudhadevi Antharjanam
- Sophisticated Analytical Instrument Facility (SAIF), Indian Institute of Technology Madras, 600036, Chennai, Tamil Nadu, India
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8
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Horiuchi S, Hayashi M, Umakoshi K. Noncovalent tailoring of coordination complexes by resorcin[4]arene-based supramolecular hosts. Dalton Trans 2023; 52:6604-6618. [PMID: 37128873 DOI: 10.1039/d3dt00710c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Molecular recognition of guest molecules in a confined cavity is one of the important phenomena in biological and artificial molecular systems. When the guest is trapped within an artificial nano-space, its conformation is fixed in an unusual fashion by noncovalent interactions with host frameworks, and also the guest is kept away from the bulk solvent by the steric effect of the host. Therefore, host-guest formations lead to the effective modulation of the chemical and physical properties of guests via noncovalent interactions. In contrast to the many examples of organic guests, the examples of host-guest formation using coordination complex guests have been less explored. This is simply due to the size and shape complementarity problem between small hosts and large coordination complex guests. Resorcin[4]arene-based supramolecular hosts have been shown to provide internal cavities that are large enough to fully accommodate coordination complexes within the internal spaces via effective molecular interactions. In this article, we focus on supramolecular strategies to control the chemical and physical properties of the coordination complex guests within resorcin[4]arene-based supramolecular hosts. By the careful selection of the host and guest complexes, these combinations can produce a new supramolecular system, showing unusual structures, redox, catalytic, and photophysical properties derived from the entrapped coordination complexes.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan.
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Mikihiro Hayashi
- Faculty of Education, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan.
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9
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Némethová I, Schmid D, Tiefenbacher K. Supramolecular Capsule Catalysis Enables the Exploration of Terpenoid Chemical Space Untapped by Nature. Angew Chem Int Ed Engl 2023; 62:e202218625. [PMID: 36727480 DOI: 10.1002/anie.202218625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/03/2023]
Abstract
Terpenes represent the largest and the most diverse class of natural compounds. This is remarkable as the whole variety is accessed from just a handful of highly conserved linear precursors. Modification of the cyclization precursors would enable a dramatic expansion of the accessible chemical space. However, natural enzymes do not enable us to tap into this potential, as they do not tolerate larger deviations from the prototypical substrate structure. Herein we report that supramolecular capsule catalysis enables facile access to diverse and novel terpenoid skeletons that formally can be traced back to C3-phenyl, benzyl, and homoprenyl derivatives of farnesol. Novel skeletons related to the presilphiperfolane core structure, as well as novel neoclovene derivatives were accessed efficiently in only four synthetic steps. Importantly, the products obtained carry functional groups that may be readily derivatized further.
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Affiliation(s)
- Ivana Némethová
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4002, Basel, Switzerland
| | - Dario Schmid
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4002, Basel, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4002, Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, 4058, Basel, Switzerland
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10
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Li TR, Piccini G, Tiefenbacher K. Supramolecular Capsule-Catalyzed Highly β-Selective Furanosylation Independent of the S N1/S N2 Reaction Pathway. J Am Chem Soc 2023; 145:4294-4303. [PMID: 36751707 DOI: 10.1021/jacs.2c13641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
The resorcin[4]arene capsule was found to catalyze β-selective furanosylation reactions for a variety of different furanosyl donors: α-d- and α-l-arabinosyl-, α-l-fucosyl-, α-d-ribosyl-, α-d-xylosyl-, and even α-d-lyxosyl fluorides. The scope is only limited by the inherently finite volume inside the closed capsular catalyst. The catalyst is readily available on a multi-100 g scale and can be recycled for at least seven rounds without significant loss in activity, yield, and selectivity. The mechanistic investigations indicated that the furanosylation mechanism is shifted toward an SN1 reaction on the mechanistic continuum between the prototypical SN1 and SN2 substitution types, as compared to the pyranosylation reaction inside the same catalyst. This is especially true for the lyxosyl donor, as indicated by the nucleophile reaction order of 0.26, and supported by metadynamics calculations. The mechanistic shift toward SN1 is of high interest as it indicates that this catalyst not only enables β-selective furanosylations and pyranoslyations independently of the substrate configuration but in addition also independently of the operating mechanism. To our knowledge, there is no alternative catalyst available that displays such properties.
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Affiliation(s)
- Tian-Ren Li
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
- NCCR Molecular Systems Engineering, BPR 1095, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - GiovanniMaria Piccini
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
- NCCR Molecular Systems Engineering, BPR 1095, Mattenstrasse 24a, 4058 Basel, Switzerland
- Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, 4058 Basel, Switzerland
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11
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Horiuchi S, Yamaguchi T, Tessarolo J, Tanaka H, Sakuda E, Arikawa Y, Meggers E, Clever GH, Umakoshi K. Symmetry-breaking host-guest assembly in a hydrogen-bonded supramolecular system. Nat Commun 2023; 14:155. [PMID: 36631447 PMCID: PMC9834293 DOI: 10.1038/s41467-023-35850-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 01/04/2023] [Indexed: 01/13/2023] Open
Abstract
Bio-inspired self-assembly is invaluable to create well-defined giant structures from small molecular units. Owing to a large entropy loss in the self-assembly process, highly symmetric structures are typically obtained as thermodynamic products while formation of low symmetric assemblies is still challenging. In this study, we report the symmetry-breaking self-assembly of a defined C1-symmetric supramolecular structure from an Oh-symmetric hydrogen-bonded resorcin[4]arene capsule and C2-symmetric cationic bis-cyclometalated Ir complexes, carrying sterically demanding tertiary butyl (tBu) groups, on the basis of synergistic effects of weak binding forces. The flexible capsule framework shows a large structural change upon guest binding to form a distorted resorcin[4]arene hexameric capsule, providing an asymmetric cavity. Location of the chiral guest inside the anisotropic environment leads to modulation of its Electric Dipole (ED) and Magnetic Dipole (MD) transition moments in the excited state, causing an increased emission quantum yield, longer emission lifetime, and enhancement of the dissymmetry factor (glum) in the circularly polarized luminescence.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan. .,Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany. .,Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
| | - Takumi Yamaguchi
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, 923-1292, Japan
| | - Jacopo Tessarolo
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Hirotaka Tanaka
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan
| | - Eri Sakuda
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan.,Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Yasuhiro Arikawa
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan
| | - Eric Meggers
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35043, Marburg, Germany
| | - Guido H Clever
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany.
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan.
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12
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Horin I, Slovak S, Cohen Y. Diffusion NMR Reveals the Structures of the Molecular Aggregates of Resorcin[4]arenes and Pyrogallol[4]arenes in Aromatic and Chlorinated Solvents. J Phys Chem Lett 2022; 13:10666-10670. [PMID: 36354303 DOI: 10.1021/acs.jpclett.2c02936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The hexameric assemblies of resorcinarenes and pyrogallolarenes are fascinating structures that can serve as nanoreactors in which new chemistry and catalysis occur. Recently, it was suggested based on SANS or SAXS that C11-resorcin[4]arene (1) forms octameric aggregates of a micellar rather than capsular structure in toluene. Here, using NMR spectroscopy, diffusion NMR, and DOSY performed on solutions of C11-resorcin[4]arene (1), C11-pyrogallol[4]arene (2), and mixtures thereof in protonated and deuterated solvents, we found that, in benzene and toluene, 1 primarily formed hexameric capsules accompanied by a minor product with diffusion characteristics consistent with an octameric assembly. In chloroform, 1 formed hexameric capsules. In toluene, 2D NMR revealed two populations of encapsulated toluene molecules in the same capsule of 1. The addition of tetrahexylammonium bromide to the assemblies of 1 in aromatic solvents drove the equilibrium toward the formation of the hexameric capsules. Interestingly, 2 formed only hexameric capsules in all solvents tested.
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13
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Ziganshina AY, Mansurova EE, Antipin IS. Colloids Based on Calixresorcins for the Adsorption, Conversion, and Delivery of Bioactive Substances. COLLOID JOURNAL 2022. [DOI: 10.1134/s1061933x22700028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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14
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Bonati FC, Secchi A, Cera G. Recent advances with calix[6]- and calix[8]arene organometallic catalysts. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.154221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Hopping protons in supramolecular catalysis. Nat Chem 2022; 14:969-971. [PMID: 36028621 DOI: 10.1038/s41557-022-01024-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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16
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Hkiri S, Steinmetz M, Schurhammer R, Sémeril D. Encapsulated Neutral Ruthenium Catalyst for Substrate‐Selective Oxidation of Alcohols. Chemistry 2022; 28:e202201887. [DOI: 10.1002/chem.202201887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Shaima Hkiri
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - Maxime Steinmetz
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - Rachel Schurhammer
- Laboratoire de Modélisation et Simulations Moléculaires, UMR-CNRS 7140-Chimie de la Matière Complexe Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - David Sémeril
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
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17
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Li TR, Huck F, Piccini G, Tiefenbacher K. Mimicry of the proton wire mechanism of enzymes inside a supramolecular capsule enables β-selective O-glycosylations. Nat Chem 2022; 14:985-994. [PMID: 35798949 DOI: 10.1038/s41557-022-00981-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 05/20/2022] [Indexed: 11/09/2022]
Abstract
Enzymes achieve high substrate and product selectivities by orientating and activating the substrate(s) appropriately inside a confined and finely optimized binding pocket. Although some basic aspects of enzymes have already been mimicked successfully with man-made catalysts, substrate activation by proton wires inside enzyme pockets has not been recreated with man-made catalysts so far. A proton wire facilitates the dual activation of a nucleophile and an electrophile via a reciprocal proton transfer, enabling highly stereoselective reactions under mild conditions. Here we present evidence for such an activation mode inside the supramolecular resorcin[4]arene capsule and demonstrate that it enables catalytic and highly β-selective glycosylation reactions-still a major challenge in glycosylation chemistry. Extensive control experiments provide very strong evidence that the reactions take place inside the molecular container. We show that this activation strategy is compatible with a broad scope of glycoside donors and nucleophiles, and is only limited by the cavity size.
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Affiliation(s)
- Tian-Ren Li
- Department of Chemistry, University of Basel, Basel, Switzerland.,NCCR Molecular Systems Engineering, Basel, Switzerland
| | - Fabian Huck
- Department of Chemistry, University of Basel, Basel, Switzerland.,NCCR Molecular Systems Engineering, Basel, Switzerland
| | - GiovanniMaria Piccini
- Facoltà di Informatica, Istituto Eulero, Università della Svizzera Italiana (USI), Lugano, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Basel, Switzerland. .,NCCR Molecular Systems Engineering, Basel, Switzerland. .,Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
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18
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Sokolova D, Piccini G, Tiefenbacher K. Enantioselective Tail-to-Head Terpene Cyclizations by Optically Active Hexameric Resorcin[4]arene Capsule Derivatives. Angew Chem Int Ed Engl 2022; 61:e202203384. [PMID: 35324038 PMCID: PMC9323437 DOI: 10.1002/anie.202203384] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Indexed: 01/01/2023]
Abstract
Molecular capsules enable the conversion of substrates inside a closed cavity, mimicking to some extent enzymatic catalysis. Chirality transfer from the molecular capsule onto the encapsulated substrate has been only studied in a few cases. Here we demonstrate that chirality transfer is possible inside a rather large molecular container of approximately 1400 Å3 . Specifically, we present 1) the first examples of optically active hexameric resorcin[4]arene capsules, 2) their ability to enantioselectively catalyze tail-to-head terpene cyclizations, and 3) the surprisingly high sensitivity of enantioselectivity on the structural modifications.
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Affiliation(s)
- Daria Sokolova
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058, Basel, Switzerland
| | - GiovanniMaria Piccini
- Facoltà di Informatica, Istituto Eulero, Università della Svizzera Italiana (USI), Lugano, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058, Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, 4058, Basel, Switzerland
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19
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Debiais M, Gimenez Molina A, Müller S, Vasseur JJ, Barvik I, Baraguey C, Smietana M. Design and NMR characterization of reversible head-to-tail boronate-linked macrocyclic nucleic acids. Org Biomol Chem 2022; 20:2889-2895. [PMID: 35319560 DOI: 10.1039/d2ob00232a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Inspired by the ability of boronic acids to bind with compounds containing diol moieties, we envisioned the formation in solution of boronate ester-based macrocycles by the head-to-tail assembly of a nucleosidic precursor that contains both a boronic acid and the natural 2',3'-diol of ribose. DOSY NMR spectroscopy experiments in water and anhydrous DMF revealed the dynamic assembly of this precursor into dimeric and trimeric macrocycles in a concentration-dependent fashion as well as the reversibility of the self-assembly process. NMR experimental values and quantum mechanics calculations provided further insight into the sugar pucker conformation profile of these macrocycles.
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Affiliation(s)
- Mégane Debiais
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 route de Mende, 34095 Montpellier, France.
| | - Alejandro Gimenez Molina
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 route de Mende, 34095 Montpellier, France.
| | - Sabine Müller
- University Greifswald, Institute for Biochemistry, Greifswald, Germany
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 route de Mende, 34095 Montpellier, France.
| | - Ivan Barvik
- Institute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, Prague 2, 121 16, Czech Republic
| | - Carine Baraguey
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 route de Mende, 34095 Montpellier, France.
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 route de Mende, 34095 Montpellier, France.
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20
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Lorenzetto T, Fabris F, Scarso A. A resorcin[4]arene hexameric capsule as a supramolecular catalyst in elimination and isomerization reactions. Beilstein J Org Chem 2022; 18:337-349. [PMID: 35422886 PMCID: PMC8978922 DOI: 10.3762/bjoc.18.38] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 03/16/2022] [Indexed: 12/27/2022] Open
Abstract
The hexameric resorcin[4]arene capsule as a self-assembled organocatalyst promotes a series of reactions like the carbonyl–ene cyclization of (S)-citronellal preferentially to isopulegol, the water elimination from 1,1-diphenylethanol, the isomerization of α-pinene and β-pinene preferentially to limonene and minor amounts of camphene. The role of the supramolecular catalyst consists in promoting the protonation of the substrates leading to the formation of cationic intermediates that are stabilized within the cavity with consequent peculiar features in terms of acceleration and product selectivity. In all cases the catalytic activity displayed by the hexameric capsule is remarkable if compared to many other strong Brønsted or Lewis acids.
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Affiliation(s)
- Tommaso Lorenzetto
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari di Venezia, via Torino 155, 30172, Mestre-Venezia, Italy
| | - Fabrizio Fabris
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari di Venezia, via Torino 155, 30172, Mestre-Venezia, Italy
| | - Alessandro Scarso
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari di Venezia, via Torino 155, 30172, Mestre-Venezia, Italy
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21
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Sokolova D, Piccini G, Tiefenbacher K. Enantioselective Tail‐to‐Head Terpene Cyclizations by Optically Active Hexameric Resorcin[4]arene Capsule Derivatives. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202203384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Daria Sokolova
- University of Basel: Universitat Basel Chemistry SWITZERLAND
| | - GiovanniMaria Piccini
- Università della Svizzera Italiana: Universita della Svizzera Italiana Informatica SWITZERLAND
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22
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Chwastek M, Cmoch P, Szumna A. Anion-Based Self-assembly of Resorcin[4]arenes and Pyrogallol[4]arenes. J Am Chem Soc 2022; 144:5350-5358. [PMID: 35274940 PMCID: PMC8972256 DOI: 10.1021/jacs.1c11793] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
![]()
Spatial sequestration
of molecules is a prerequisite for the complexity
of biological systems, enabling the occurrence of numerous, often
non-compatible chemical reactions and processes in one cell at the
same time. Inspired by this compartmentalization concept, chemists
design and synthesize artificial nanocontainers (capsules and cages)
and use them to mimic the biological complexity and for new applications
in recognition, separation, and catalysis. Here, we report the formation
of large closed-shell species by interactions of well-known polyphenolic
macrocycles with anions. It has been known since many years that C-alkyl
resorcin[4]arenes (R4C) and C-alkyl pyrogallol[4]arenes
(P4C) narcissistically self-assemble in nonpolar solvents
to form hydrogen-bonded capsules. Here, we show a new interaction
model that additionally involves anions as interacting partners and
leads to even larger capsular species. Diffusion-ordered spectroscopy
and titration experiments indicate that the anion-sealed species have
a diameter of >26 Å and suggest stoichiometry (M)6(X–)24 and tight ion pairing
with cations. This self-assembly is effective in a nonpolar environment
(THF and benzene but not in chloroform), however, requires initiation
by mechanochemistry (dry milling) in the case of non-compatible solubility.
Notably, it is common among various polyphenolic macrocycles (M) having diverse geometries and various conformational lability.
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Affiliation(s)
- Monika Chwastek
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Piotr Cmoch
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Agnieszka Szumna
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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23
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Karakhanov E, Maximov A, Zolotukhina A. Heterogeneous Dendrimer-Based Catalysts. Polymers (Basel) 2022; 14:polym14050981. [PMID: 35267800 PMCID: PMC8912888 DOI: 10.3390/polym14050981] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 02/04/2023] Open
Abstract
The present review compiles the advances in the dendritic catalysis within the last two decades, in particular concerning heterogeneous dendrimer-based catalysts and their and application in various processes, such as hydrogenation, oxidation, cross-coupling reactions, etc. There are considered three main approaches to the synthesis of immobilized heterogeneous dendrimer-based catalysts: (1) impregnation/adsorption on silica or carbon carriers; (2) dendrimer covalent grafting to various supports (silica, polystyrene, carbon nanotubes, porous aromatic frameworks, etc.), which may be performed in a divergent (as a gradual dendron growth on the support) or convergent way (as a grafting of whole dendrimer to the support); and (3) dendrimer cross-linking, using transition metal ions (resulting in coordination polymer networks) or bifunctional organic linkers, whose size, polarity, and rigidity define the properties of the resulted material. Additionally, magnetically separable dendritic catalysts, which can be synthesized using the three above-mentioned approaches, are also considered. Dendritic catalysts, synthesized in such ways, can be stored as powders and be easily separated from the reaction medium by filtration/centrifugation as traditional heterogeneous catalysts, maintaining efficiency as for homogeneous dendritic catalysts.
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Affiliation(s)
- Eduard Karakhanov
- Department of Petroleum Chemistry and Organic Catalysis, Moscow State University, 119991 Moscow, Russia;
| | - Anton Maximov
- Institute of Petrochemical Synthesis RAS, 119991 Moscow, Russia;
| | - Anna Zolotukhina
- Institute of Petrochemical Synthesis RAS, 119991 Moscow, Russia;
- Correspondence:
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24
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Gramage-Doria R, Abuhafez N, Perennes A. Mimicking Enzymes: Taking Advantage of the Substrate-Recognition Properties of Metalloporphyrins in Supramolecular Catalysis. SYNTHESIS-STUTTGART 2022. [DOI: 10.1055/a-1729-9223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
AbstractThe present review describes the most relevant advances dealing with supramolecular catalysis in which metalloporphyrins are employed as substrate-recognition sites in the second coordination sphere of the catalyst. The kinetically labile interaction between metalloporphyrins (typically, those derived from zinc) and nitrogen- or oxygen-containing substrates is energetically comparable to the non-covalent interactions (i.e., hydrogen bonding) found in enzymes enabling substrate preorganization. Much inspired from host–guest phenomena, the catalytic systems described in this account display unique activities, selectivities and action modes that are difficult to reach by applying purely covalent strategies.
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25
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De Rosa M, Gambaro S, Soriente A, Della Sala P, Iuliano V, Talotta C, Gaeta C, Rescifina A, Neri P. Carbocation catalysis in confined space: activation of trityl chloride inside the hexameric resorcinarene capsule. Chem Sci 2022; 13:8618-8625. [PMID: 35974771 PMCID: PMC9337730 DOI: 10.1039/d2sc02901d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 06/06/2022] [Indexed: 11/21/2022] Open
Abstract
The hexameric resorcinarene capsule is able to promote carbocation catalysis inside its cavity.
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Affiliation(s)
- Margherita De Rosa
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Stefania Gambaro
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Veronica Iuliano
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Antonio Rescifina
- Dipartimento di Scienze del Farmaco e della Salute, Università di Catania, viale Andrea Doria, 6, 95125 Catania, Italy
| | - Placido Neri
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
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26
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La Manna P, Talotta C, Gaeta C, Cohen Y, Slovak S, Rescifina A, Sala PD, De Rosa M, Soriente A, Neri P. Supramolecular catalysis in confined space: making the pyrogallol[4]arene capsule catalytically active in non-competitive solvent. Org Chem Front 2022. [DOI: 10.1039/d2qo00172a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The confined space inside the hexameric pyrogallol[4]arene capsule (CP6) has been exploited for the catalysis of the 1,3-dipolar cycloaddition (1,3-DC) between the proline-based iminium derivative I and nitrone 3, in the presence of the non-competitive benzene solvent.
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Affiliation(s)
- Pellegrino La Manna
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Yoram Cohen
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 69978 Tel Aviv, Israel
| | - Sarit Slovak
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 69978 Tel Aviv, Israel
| | - Antonio Rescifina
- Dipartimento di Scienze del Farmaco e della Salute Università di Catania, Viale Andrea Doria 6, I-95125 Catania, Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
| | - Placido Neri
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II 132, I-84084 Fisciano (Salerno), Italy
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27
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Huck F, Catti L, Reber GL, Tiefenbacher K. Expanding the Protecting Group Scope for the Carbonyl Olefin Metathesis Approach to 2,5-Dihydropyrroles. J Org Chem 2021; 87:419-428. [PMID: 34928613 DOI: 10.1021/acs.joc.1c02447] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Chiral pyrrolidine derivatives are important building blocks for natural product synthesis. Carbonyl olefin metathesis has recently emerged as a powerful tool for the construction of such building blocks from chiral amino acid derivatives. Here, we demonstrate that the supramolecular resorcinarene catalyst enables access to chiral 2,5-dihydropyrroles under Brønsted acid catalysis. Moreover, this catalytic system even tolerated Lewis-basic-protecting groups like mesylates that are not compatible with alternative catalysts. As expected for conversion inside a closed cavity, the product yield and selectivity depended on the size of the substrates.
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Affiliation(s)
- Fabian Huck
- Department of Chemistry, University of Basel, Mattenstrasse 24a, CH-4058 Basel, Switzerland
| | - Lorenzo Catti
- Laboratory for Chemistry and Life Science Institute of Innovative Research, Tokyo Institute of Technology, 4259-R1-28, Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Gian Lino Reber
- Department of Chemistry, University of Basel, Mattenstrasse 24a, CH-4058 Basel, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, CH-4058 Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, CH-4058 Basel, Switzerland
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28
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Poole DA, Mathew S, Reek JNH. Just Add Water: Modulating the Structure-Derived Acidity of Catalytic Hexameric Resorcinarene Capsules. J Am Chem Soc 2021; 143:16419-16427. [PMID: 34591465 PMCID: PMC8517980 DOI: 10.1021/jacs.1c04924] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
![]()
The hexameric undecyl-resorcin[4]arene
capsule (C11R6) features eight discrete
structural water molecules located at the vertices of its cubic suprastructure.
Combining NMR spectroscopy with classical molecular dynamics (MD),
we identified and characterized two distinct species of this capsule, C11R6-A and C11R6-B, respectively featuring 8 and 15 water
molecules incorporated into their respective hydrogen-bonded networks.
Furthermore, we found that the ratio of the C11R6-A and C11R6-B found in solution can be modulated by controlling the water content
of the sample. The importance of this supramolecular modulation in C11R6 capsules
is highlighted by its ability to perform acid-catalyzed transformations,
which is an emergent property arising from the hydrogen bonding within
the suprastructure. We show that the conversion of C11R6-A to C11R6-B enhances the catalytic rate of a model Diels–Alder
cyclization by 10-fold, demonstrating the cofactor-derived control
of a supramolecular catalytic process that emulates natural enzymatic
systems.
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Affiliation(s)
- David A Poole
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van't Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Simon Mathew
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van't Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Joost N H Reek
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van't Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
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29
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Cohen Y, Slovak S, Avram L. Solution NMR of synthetic cavity containing supramolecular systems: what have we learned on and from? Chem Commun (Camb) 2021; 57:8856-8884. [PMID: 34486595 DOI: 10.1039/d1cc02906a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
NMR has been instrumental in studies of both the structure and dynamics of molecular systems for decades, so it is not surprising that NMR has played a pivotal role in the study of host-guest complexes and supramolecular systems. In this mini-review, selected examples will be used to demonstrate the added value of using (multiparametric) NMR for studying macrocycle-based host-guest and supramolecular systems. We will restrict the discussion to synthetic host systems having a cavity that can engulf their guests thus restricting them into confined spaces. So discussion of selected examples of cavitands, cages, capsules and their complexes, aggregates and polymers as well as organic cages and porous liquids and other porous materials will be used to demonstrate the insights that have been gathered from the extracted NMR parameters when studying such systems emphasizing the information obtained from somewhat less routine NMR methods such as diffusion NMR, diffusion ordered spectroscopy (DOSY) and chemical exchange saturation transfer (CEST) and their variants. These selected examples demonstrate the impact that the results and findings from these NMR studies have had on our understanding of such systems and on the developments in various research fields.
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Affiliation(s)
- Yoram Cohen
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 699781, Tel Aviv, Israel.
| | - Sarit Slovak
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv, 699781, Tel Aviv, Israel.
| | - Liat Avram
- Faculty of Chemistry, Weizmann Institute of Science, Rehovot 7610001, Israel
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30
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Nemat SJ, Tiefenbacher K. Thioderivatives of Resorcin[4]arene and Pyrogallol[4]arene: Are Thiols Tolerated in the Self-Assembly Process? Org Lett 2021; 23:6861-6865. [PMID: 34432471 DOI: 10.1021/acs.orglett.1c02426] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Three novel thiol bearing resorcin[4]arene and pyrogallol[4]arene derivatives were synthesized. Their properties were studied with regards to self-assembly, disulfide chemistry, and Brønsted acid catalysis. This work demonstrates that (1) one aromatic thiol on the resorcin[4]arene framework is tolerated in the self-assembly process to a hexameric hydrogen bond-based capsule, (2) thio-derivatized resorcin[4]arene analogs can be covalently linked through disulfides, and (3) the increased acidity of aromatic thio-substituent is not sufficient to replace HCl as cocatalyst for capsule catalyzed terpene cyclizations.
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Affiliation(s)
- Suren J Nemat
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland.,National Centre of Competence in Research (NCCR) Molecular Systems Engineering, BPR 1095, Basel, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland.,National Centre of Competence in Research (NCCR) Molecular Systems Engineering, BPR 1095, Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 24, 4058 Basel, Switzerland
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31
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Antipin IS, Alfimov MV, Arslanov VV, Burilov VA, Vatsadze SZ, Voloshin YZ, Volcho KP, Gorbatchuk VV, Gorbunova YG, Gromov SP, Dudkin SV, Zaitsev SY, Zakharova LY, Ziganshin MA, Zolotukhina AV, Kalinina MA, Karakhanov EA, Kashapov RR, Koifman OI, Konovalov AI, Korenev VS, Maksimov AL, Mamardashvili NZ, Mamardashvili GM, Martynov AG, Mustafina AR, Nugmanov RI, Ovsyannikov AS, Padnya PL, Potapov AS, Selektor SL, Sokolov MN, Solovieva SE, Stoikov II, Stuzhin PA, Suslov EV, Ushakov EN, Fedin VP, Fedorenko SV, Fedorova OA, Fedorov YV, Chvalun SN, Tsivadze AY, Shtykov SN, Shurpik DN, Shcherbina MA, Yakimova LS. Functional supramolecular systems: design and applications. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr5011] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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32
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Fujii S, Sakurai K. Structural Analysis of an Octameric Resorcinarene Self-Assembly in Toluene and its Morphological Transition by Temperature. J Phys Chem Lett 2021; 12:6464-6468. [PMID: 34236861 DOI: 10.1021/acs.jpclett.1c01978] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Calix[4]resorcinarene derivatives such as C-undecylcalix[4]resorcinarene self-assemble into a hexameric capsule-like structure. This structure is expected in any apolar solvent, but we recently found a self-assembled octameric form of resorcinarene in toluene. To understand this unexpected form, we performed small-angle X-ray scattering (SAXS) measurements of the octameric self-assembly. In ab initio shape reconstruction and model fitting of the SAXS profile, a core-shell spherical structure resembling a reverse micelle was found in the octameric self-assembly. The shell and core were composed of alkyl chains and resorcinol moieties, respectively. We also evaluated the temperature dependence of the octameric self-assembly. Above 95 °C, the structure began directly decomposing into unimers, implying the partial cleavage of hydrogen bonds in the octamer core. Meanwhile, below 25 °C, the spherical structure of the octamer partially transformed to a cylindrical structure. This morphological transition could be understood by packing parameter theory, which is often applied to suspected micellar structures.
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Affiliation(s)
- Shota Fujii
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
| | - Kazuo Sakurai
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
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33
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34
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Merget S, Catti L, Zev S, Major DT, Trapp N, Tiefenbacher K. Concentration-Dependent Self-Assembly of an Unusually Large Hexameric Hydrogen-Bonded Molecular Cage. Chemistry 2021; 27:4447-4453. [PMID: 33346916 DOI: 10.1002/chem.202005046] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Indexed: 01/08/2023]
Abstract
The sizes of available self-assembled hydrogen-bond-based supramolecular capsules and cages are rather limited. The largest systems have volumes of approximately 1400-2300 Å3 . Herein, we report a large, hexameric cage based on intermolecular amide-amide dimerization. The unusual structure with openings, reminiscent of covalently linked cages, is held together by 24 hydrogen bonds. With a diameter of 2.3 nm and a cavity volume of ∼2800 Å3 , the assembly is larger than any previously known capsule/cage structure relying exclusively on hydrogen bonds. The self-assembly process in chlorinated, organic solvents was found to be strongly concentration dependent, with the monomeric form prevailing at low concentrations. Additionally, the formation of host-guest complexes with fullerenes (C60 and C70 ) was observed.
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Affiliation(s)
- Severin Merget
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058, Basel, Switzerland
| | - Lorenzo Catti
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa, 9201192, Japan
| | - Shani Zev
- Department of Chemistry and Institute for Nanotechnology & Advanced Materials, Bar-Ilan University, Ramat-Gan, 52900, Israel
| | - Dan T Major
- Department of Chemistry and Institute for Nanotechnology & Advanced Materials, Bar-Ilan University, Ramat-Gan, 52900, Israel
| | - Nils Trapp
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir-Prelog-Weg 3, 8093, Zürich, Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058, Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zürich, Mattenstrasse 26, 4058, Basel, Switzerland
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35
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Chwastek M, Cmoch P, Szumna A. Dodecameric Anion-Sealed Capsules based on Pyrogallol[5]arenes and Resorcin[5]arenes. Angew Chem Int Ed Engl 2021; 60:4540-4544. [PMID: 33372317 DOI: 10.1002/anie.202013105] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 12/07/2020] [Indexed: 11/09/2022]
Abstract
The paper reports formation of exceptionally large capsular species (diameter of c. a. 30 Å) by interactions of polyphenolic macrocycles with 5-fold symmetry with anions. Pyrogallol[5]arenes and resorcin[5]arenes interact with anions via hydrogen bonds involving phenolic OH groups or aromatic CH groups. Based on NMR titration experiments, diffusion coefficients, and geometric requirements, it is postulated that the capsules have (P5H)12 (X- )60 or (R5H)12 (X- )60 stoichiometry and a unique geometry of one of the Platonic solids-a dodecahedron. The capsules exist in THF and in benzene, but not in chloroform, reflecting competitive effects in the solvation of anions. It is also demonstrated that mechanochemical pre-treatment (dry-milling) of solid samples is indispensable to initialize self-assembly in benzene.
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Affiliation(s)
- Monika Chwastek
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw, Poland
| | - Piotr Cmoch
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw, Poland
| | - Agnieszka Szumna
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw, Poland
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36
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Chwastek M, Cmoch P, Szumna A. Dodecameric Anion‐Sealed Capsules based on Pyrogallol[5]arenes and Resorcin[5]arenes. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202013105] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Monika Chwastek
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 Warsaw Poland
| | - Piotr Cmoch
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 Warsaw Poland
| | - Agnieszka Szumna
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 Warsaw Poland
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37
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Affiliation(s)
- Dominic Danielsiek
- Faculty of Chemistry and Biochemistry Ruhr-University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Gerald Dyker
- Faculty of Chemistry and Biochemistry Ruhr-University Bochum Universitätsstraße 150 44801 Bochum Germany
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38
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Zhang T, Le Corre L, Reinaud O, Colasson B. A Promising Approach for Controlling the Second Coordination Sphere of Biomimetic Metal Complexes: Encapsulation in a Dynamic Hydrogen-Bonded Capsule. Chemistry 2021; 27:434-443. [PMID: 33048410 DOI: 10.1002/chem.202004370] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 10/12/2020] [Indexed: 11/09/2022]
Abstract
The design of biomimetic models of metalloenzymes needs to take into account many factors and is therefore a challenging task. We propose in this work an original strategy to control the second coordination sphere of a metal centre and its distal environment. A biomimetic complex, reproducing the first coordination sphere, is encapsulated in a self-assembled hydrogen-bonded capsule. The cationic complex is co-encapsulated with its counter-anion or with solvent molecules. The capsule is dynamic, allowing a fast in/out exchange of the co-encapsulated species. It also provides both a hydrogen-bonding site in the second coordination sphere and a source of proton as it can be deprotonated in the presence of the complex, providing a globally neutral host-guest assembly. This simple and broad scope strategy is unprecedented in biomimetic studies. The approach appears to be a very promising method for the stabilisation of reactive species and for the study of their reactivity.
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Affiliation(s)
- Tongtong Zhang
- Université de Paris, UMR 8601, CNRS, 45 rue des Saints Pères, 75006, Paris, France
| | - Laurent Le Corre
- Université de Paris, UMR 8601, CNRS, 45 rue des Saints Pères, 75006, Paris, France
| | - Olivia Reinaud
- Université de Paris, UMR 8601, CNRS, 45 rue des Saints Pères, 75006, Paris, France
| | - Benoit Colasson
- Université de Paris, UMR 8601, CNRS, 45 rue des Saints Pères, 75006, Paris, France
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39
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Bhattacharyya A, De Sarkar S, Das A. Supramolecular Engineering and Self-Assembly Strategies in Photoredox Catalysis. ACS Catal 2020. [DOI: 10.1021/acscatal.0c04952] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Ayan Bhattacharyya
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Suman De Sarkar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246. India
| | - Anindita Das
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
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40
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Gaeta C, La Manna P, De Rosa M, Soriente A, Talotta C, Neri P. Supramolecular Catalysis with Self‐Assembled Capsules and Cages: What Happens in Confined Spaces. ChemCatChem 2020. [DOI: 10.1002/cctc.202001570] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Carmine Gaeta
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Pellegrino La Manna
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Margherita De Rosa
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Annunziata Soriente
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Carmen Talotta
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Placido Neri
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
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41
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Castillo-Aguirre A, Esteso MA, Maldonado M. Resorcin[4]arenes: Generalities and Their Role in the Modification and Detection of Amino Acids. CURR ORG CHEM 2020. [DOI: 10.2174/1385272824999200510232141] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The characteristics and properties that enable resorcin[4]arenes to self-assemble
in order to form derivatives with amino acids with a high potential for application in various
fields are reviewed. In particular, resorcin[4]arene synthesis, their characteristics, the
variety in the size of cavity, their functional groups, and their applications associated with
molecular interactions are described in this study. Also, the types of amino acids that can
be recognized by resorcin[4]arenes, their interactions, the techniques that allow the determination
of the association constants, and the evaluation of the stoichiometry of the complex
formed, are reviewed.
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Affiliation(s)
- Alver Castillo-Aguirre
- Department of Chemistry, Faculty of Science, National University of Colombia-Bogota Headquarters, 30 No. 45-03 Carrera, Colombia
| | - Miguel Angel Esteso
- Universidad Catolica Santa Teresa de Jesus de Avila. Calle los Canteros s/n. 05005 Avila, Spain
| | - Mauricio Maldonado
- Department of Chemistry, Faculty of Science, National University of Colombia-Bogota Headquarters, 30 No. 45-03 Carrera, Colombia
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42
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Horiuchi S, Umakoshi K. Emissive Supramolecular Systems Based on Reversible Bond Formation and Noncovalent Interactions. CHEM REC 2020; 21:469-479. [PMID: 33236813 DOI: 10.1002/tcr.202000125] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 11/05/2020] [Indexed: 12/16/2022]
Abstract
Noncovalent interactions and reversible bond formations are widely seen in natural systems for the construction of sophisticated molecular systems that perform various biological processes. Inspired by the natural systems, luminescent supramolecular systems constructed by coordination-driven self-assembly and homometallic metal-metal interations have been studied increasingly. These supramolecular systems show fascinating luminescent behaviors that are not observed from single components. This review summarizes our progress in the development of two types of unique luminescent supramolecular systems. The mononuclear Pt(II) complex units can sandwich coinage metal ions to form heteropolynuclear complexes involving heterometallic metal-metal interactions. A close proximity of the two or three different metal ions by the noncovalent forces lead to orbital overlapping among the coinage metal ions and the Pt(II) complex units, showing emission color change accompanied with structural transformation and reversible metal binding behaviors. Emissive host-guest systems consisting of mononuclear metal complexes and a hydrogen-bonded capsule are also developed, that show a unique encapsulation-induced emission enhancement (EIEE) behavior.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki, 852-8521, Japan
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki, 852-8521, Japan
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43
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Zhang W, Cheng G, Haller GL, Liu Y, Lercher JA. Rate Enhancement of Acid-Catalyzed Alcohol Dehydration by Supramolecular Organic Capsules. ACS Catal 2020. [DOI: 10.1021/acscatal.0c03625] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Wei Zhang
- Department of Chemistry and Catalysis Research Center, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Guanhua Cheng
- Department of Chemistry and Catalysis Research Center, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Gary L. Haller
- Department of Chemistry and Catalysis Research Center, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Yue Liu
- Department of Chemistry and Catalysis Research Center, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Johannes A. Lercher
- Department of Chemistry and Catalysis Research Center, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
- Institute for Integrated Catalysis, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, United States
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44
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Affiliation(s)
- Daisuke Shimoyama
- Department of Chemistry Graduate School of Advanced Science and Engineering Hiroshima University 1-3-1 Kagamiyama Higashi Hiroshima 739-8526 Japan
| | - Takeharu Haino
- Department of Chemistry Graduate School of Advanced Science and Engineering Hiroshima University 1-3-1 Kagamiyama Higashi Hiroshima 739-8526 Japan
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45
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Gambaro S, Talotta C, Della Sala P, Soriente A, De Rosa M, Gaeta C, Neri P. Kinetic and Thermodynamic Modulation of Dynamic Imine Libraries Driven by the Hexameric Resorcinarene Capsule. J Am Chem Soc 2020; 142:14914-14923. [PMID: 32786766 PMCID: PMC8010792 DOI: 10.1021/jacs.0c04705] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
![]()
The
composition of dynamic covalent imine libraries (DCL) adapts
to the presence of the hexameric resorcinarene capsule. In the presence
of the self-assembled capsule, a kinetic and thermodynamic modulation
of the imine constituents of the DCLs was observed, which was induced
by an unusual predatory action of the capsule on specific imine constituents.
More complex 2 × 2 DCLs also adapt to the presence of the hexameric
capsule, showing a thermodynamic and kinetic modulation of the constituents
induced by the predatory action of the capsule. By cross-referencing
experimental data, a good selectivity (up to 66%) for one constituent
can be induced in a 2 × 2 DCL.
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Affiliation(s)
- Stefania Gambaro
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Placido Neri
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia "A. Zambelli", Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
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46
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Capacchione C, Picariello D, Della Sala P, Talotta C, Neri P, Bruno I, Pauciulo A, Bartiromo AR, Gliubizzi R, Gaeta C. Dispersing and Retarding Properties of Water-Soluble Tetrasulfonate Resorcin[4]arene and Pyrogallol[4]arene Macrocycles in Cement-Based Mortar. ACS OMEGA 2020; 5:18218-18225. [PMID: 32743197 PMCID: PMC7391848 DOI: 10.1021/acsomega.0c01837] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 06/04/2020] [Indexed: 05/27/2023]
Abstract
Water-soluble tetrasulfonate resorcin[4]arene (1a and 1c) and pyrogallol[4]arene (1b) macrocycles were synthesized and investigated for their dispersing properties in cement-based mortars. Mortar tests clearly show that these polyhydroxylated macrocycles (nonpolymeric) work as cement dispersants. Setting time determinations indicate that the macrocycles 1a and 1b show a retarding effect that is reminiscent of the behavior of superplasticizers (SPs) functionalized with polyhydroxylated β-CDs. Finally, the addition of sulfate anions to the cement paste does not affect the dispersing abilities of 1b, probably due to the sulfate anion capture by H-bonding interactions with its OH groups at the upper rim.
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Affiliation(s)
- Clotilde Capacchione
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
- BI-QEM
SPECIALTIES S.p.A., Zona
industriale 84021 Buccino, Salerno, Italia
| | - Davide Picariello
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
| | - Paolo Della Sala
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
| | - Carmen Talotta
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
| | - Placido Neri
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
| | - Immacolata Bruno
- BI-QEM
SPECIALTIES S.p.A., Zona
industriale 84021 Buccino, Salerno, Italia
| | - Antonio Pauciulo
- BI-QEM
SPECIALTIES S.p.A., Zona
industriale 84021 Buccino, Salerno, Italia
| | | | - Rocco Gliubizzi
- BI-QEM
SPECIALTIES S.p.A., Zona
industriale 84021 Buccino, Salerno, Italia
| | - Carmine Gaeta
- Dipartimento
di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, 84084Fisciano, Salerno, Italia
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47
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Nemat SJ, Jędrzejewska H, Prescimone A, Szumna A, Tiefenbacher K. Catechol[4]arene: The Missing Chiral Member of the Calix[4]arene Family. Org Lett 2020; 22:5506-5510. [PMID: 32627560 DOI: 10.1021/acs.orglett.0c01864] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A missing, inherently chiral member of the calix[4]arene family denoted "catechol[4]arene" was synthesized. Its properties were studied and compared to the ones of its close relatives resorcin[4]arene and pyrogallol[4]arene. This novel supramolecular host exhibits binding capabilities that are superior to its sister molecules in polar media. The enantiomerically pure forms of the macrocycle display modest recognition of chiral ammonium salts.
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Affiliation(s)
- Suren J Nemat
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Hanna Jędrzejewska
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Agnieszka Szumna
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 24, 4058 Basel, Switzerland
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48
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Jongkind LJ, Rahimi M, Poole D, Ton SJ, Fogg DE, Reek JNH. Protection of Ruthenium Olefin Metathesis Catalysts by Encapsulation in a Self‐assembled Resorcinarene Capsule. ChemCatChem 2020. [DOI: 10.1002/cctc.202000111] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Lukas J. Jongkind
- Homogeneous, Supramolecular and Bio-Inspired Catalysis Van't Hoff Institute for Molecular Sciences University of Amsterdam Science Park 904 1098 XH Amsterdam (The Netherlands
| | - Maryam Rahimi
- Homogeneous, Supramolecular and Bio-Inspired Catalysis Van't Hoff Institute for Molecular Sciences University of Amsterdam Science Park 904 1098 XH Amsterdam (The Netherlands
- Centre for Catalysis Research & Innovation and Department of Chemistry and Biomolecular Sciences University of Ottawa 10 Marie Curie Ottawa ON K1 N 6 N5 Canada
| | - David Poole
- Homogeneous, Supramolecular and Bio-Inspired Catalysis Van't Hoff Institute for Molecular Sciences University of Amsterdam Science Park 904 1098 XH Amsterdam (The Netherlands
| | - Stephanie J. Ton
- Centre for Catalysis Research & Innovation and Department of Chemistry and Biomolecular Sciences University of Ottawa 10 Marie Curie Ottawa ON K1 N 6 N5 Canada
| | - Deryn E. Fogg
- Centre for Catalysis Research & Innovation and Department of Chemistry and Biomolecular Sciences University of Ottawa 10 Marie Curie Ottawa ON K1 N 6 N5 Canada
| | - Joost N. H. Reek
- Homogeneous, Supramolecular and Bio-Inspired Catalysis Van't Hoff Institute for Molecular Sciences University of Amsterdam Science Park 904 1098 XH Amsterdam (The Netherlands
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Fujii S, Miyake R, Campo LD, Lee JH, Takahashi R, Sakurai K. Structural Polymorphism of Resorcinarene Assemblies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:6222-6227. [PMID: 32391699 DOI: 10.1021/acs.langmuir.0c00861] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In 1997, a study based on X-ray crystallography revealed that resorcinarenes adopt a hexameric capsule-like structure. The function of resorcinarenes has been discussed on the basis of this structure; however, our recent study showed that the hexamer may be only one of resorcinarenes' polymorphic members. Here, we present the solvent dependence of the aggregation number of C-undecylresorcinarene in water-saturated toluene and chloroform using small-angle neutron and X-ray scattering and analytical ultracentrifugation measurements. We found that a new octamer was formed in toluene where the eight resorcinarene units were placed at the vertices of a regular cube; this contrasts to the previous structure in chloroform, namely, a hexamer with the six resorcinarenes located at the vertices of a regular octahedron that has a cavity inside where chloroform molecules are pooled.
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Affiliation(s)
- Shota Fujii
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
| | - Rika Miyake
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
| | - Liliana de Campo
- Australian Centre for Neutron Scattering (ACNS), Australian Nuclear Science and Technology Organization (ANSTO), Lucas Heights, Sydney, NSW 2234, Australia
| | - Ji Ha Lee
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
| | - Rintaro Takahashi
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
| | - Kazuo Sakurai
- Department of Chemistry and Biochemistry, University of Kitakyushu, 1-1 Hibikino, Kitakyushu, Fukuoka 808-0135, Japan
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Wang K, Jordan JH, Hu X, Wang L. Supramolecular Strategies for Controlling Reactivity within Confined Nanospaces. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000045] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Kaiya Wang
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Jacobs H. Jordan
- The Southern Regional Research Center Agricultural Research Service, USDA New Orleans LA 70124 USA
| | - Xiao‐Yu Hu
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Leyong Wang
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 China
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