Entropy‐Driven Cooperativity in the Guest Binding of an Octaphosphonate Bis‐cavitand

Recognition of Amino Acid Salts by Temperature-Dependent Allosteric Binding with Stereodynamic Urea Receptors

Positive homotropic artificial allosteric systems are important for the regulation of cooperativity, selectivity and nonlinear amplification. Stereodynamic homotropic allosteric receptors can transmit and amplify induced chirality by the first ligand binding to axial chirality between two chromophores. We herein report stereodynamic allosteric urea receptors consisting of a rotational shaft as the axial chirality unit, terphenyl units as structural transmission sites and four urea units as binding sites. NMR titration experiments revealed that the receptor can bind two carboxylate guests in a positive homotropic allosteric manner attributed to the inactivation by intramolecular hydrogen-bonding between urea units within the receptor. In addition, the VT-CD spectra observed upon binding of the urea receptor with l- or D-amino acid salts in MeCN showed interesting temperature-dependent Cotton effects, based on the differences of the receptor shaft unit and the guest structure. The successful discrimination of hydrocarbon-based side chains of amino acid salts indicated that the input of chiral and steric information for the guest was amplified as outputs of the Cotton effect and the temperature-dependence of VT-CD spectra through cooperativity of positive allosteric binding.

Host-Guest Complexation of Bisporphyrin Cleft and Electron-Deficient Aromatic Guests

The host-guest complexation of a bisporphyrin cleft with various electron-deficient guest molecules was studied in solution and in the solid-state. X-ray crystal structures of a bisporphyrin cleft with naphthalene dianhydride and 2,4,7-trinitrofluorenone reveal that these guest molecules were located within the bisporphyrin cleft and formed ideal π-π stacking interactions in a host-guest ratio of 1:1. Isothermal titration calorimetry determined the binding constants and thermodynamic parameters for the 1:1 host-guest complexations in 1,2-dichloroethane and toluene. Two types of enthalpy-entropy compensation effects were found: (1) The tightly stacked host-guest structures restrict guest movement within the cleft, which results in significant desolvation with large intrinsic entropies. (2) The loosely bound guests maintain their molecular freedom within the bisporphyrin cleft, which leads to less desolvation with small intrinsic entropies. Chiral guest encapsulation directed the clockwise and anticlockwise twisted conformations of the bisporphyrin units, which induced bisignate CDs.

Facile Synthesis of a Fully Fused, Three-Dimensional π-Conjugated Archimedean Cage with Magnetically Shielded Cavity

The synthesis of molecular cages consisting of fully fused, π-conjugated rings is rare due to synthetic challenges including preorganization, large strain, and poor solubility. Herein, we report such an example in which a tris-2-aminobenzophenone precursor undergoes acid-mediated self-condensation to form a truncated tetrahedron, one of the 13 Archimedean solids. Formation of eight-membered [1,5]diazocine rings provides preorganization and releases the strain while still maintains weak π-conjugation of the backbone. Thorough characterizations were performed by X-ray, NMR, and UV-vis analysis, assisted by theoretical calculations. The cage exhibits a rigid backbone structure with a well-defined cavity that confines a magnetically shielded environment. The solvent molecule, o-dichlorobenzene, is precisely encapsulated in the cavity at a 1:1 ratio with multiple π···π, C-H···π, and halogen···π interactions with the cage skeleton, implying its template effect for the cage closing reaction. Our synthetic strategy opens the opportunity to access more complex, fully fused, three-dimensional π-conjugated cages.

Negative Cooperativity in Guest Binding of a Ditopic Self-Folding Biscavitand

A brand-new self-folding biscavitand was synthesized from a feet-to-feet-connected bisresorcinarene. The X-ray crystal structure of the biscaivtand showed that the two cavities are tightly connected with four butylene linkages. The conformationally coupled two cavities accommodated two cationic guests, showing a homotropic negative cooperativity in nonpolar solvents (toluene and chloroform). A polar tetrahydrofuran solvent weakened the cyclic hydrogen bonding interactions of the biscavitand, which resulted in noncooperative guest binding.

Applications of isothermal titration calorimetry in pure and applied research from 2016 to 2020

The last 5 years have seen a series of advances in the application of isothermal titration microcalorimetry (ITC) and interpretation of ITC data. ITC has played an invaluable role in understanding multiprotein complex formation including proteolysis-targeting chimeras (PROTACS), and mitochondrial autophagy receptor Nix interaction with LC3 and GABARAP. It has also helped elucidate complex allosteric communication in protein complexes like trp RNA-binding attenuation protein (TRAP) complex. Advances in kinetics analysis have enabled the calculation of kinetic rate constants from pre-existing ITC data sets. Diverse strategies have also been developed to study enzyme kinetics and enzyme-inhibitor interactions. ITC has also been applied to study small molecule solvent and solute interactions involved in extraction, separation, and purification applications including liquid-liquid separation and extractive distillation. Diverse applications of ITC have been developed from the analysis of protein instability at different temperatures, determination of enzyme kinetics in suspensions of living cells to the adsorption of uremic toxins from aqueous streams.

One-dimensional arrangement of NORIA in the solid-state

NORIA is a synthetic macrocycle consisting of twelve resorcinol rings. By cocrystallization of NORIA with benzene, NORIA organized one-dimensional array.

Upper-rim functionalization and supramolecular polymerization of a feet-to-feet-connected biscavitand

An octaiodobiscavitand was synthesized via an aromatic Finkelstein iodination reaction in good yield. An octa-functionalized biscavitand self-assembled to form a supramolecular polymer in the solid state.

Absorption of chemicals in amorphous trisresorcinarene

Trisresorcinarene is an interesting class of macrocyclic host. Its unique structure and insolubility allow to function as a amorphous solid absorbent capable of absorbing various aromatic and aliphatic hydrocarbons.