1
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Wehrhan L, Keller BG. Fluorinated Protein-Ligand Complexes: A Computational Perspective. J Phys Chem B 2024. [PMID: 38886167 DOI: 10.1021/acs.jpcb.4c01493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
Fluorine is an element renowned for its unique properties. Its powerful capability to modulate molecular properties makes it an attractive substituent for protein binding ligands; however, the rational design of fluorination can be challenging with effects on interactions and binding energies being difficult to predict. In this Perspective, we highlight how computational methods help us to understand the role of fluorine in protein-ligand binding with a focus on molecular simulation. We underline the importance of an accurate force field, present fluoride channels as a showcase for biomolecular interactions with fluorine, and discuss fluorine specific interactions like the ability to form hydrogen bonds and interactions with aryl groups. We put special emphasis on the disruption of water networks and entropic effects.
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Affiliation(s)
- Leon Wehrhan
- Department of Chemistry, Biology and Pharmacy, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Bettina G Keller
- Department of Chemistry, Biology and Pharmacy, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
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2
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Makarov AY, Buravlev AA, Romanenko GV, Bogomyakov AS, Zakharov BA, Morozov VA, Sukhikh AS, Shundrina IK, Shundrin LA, Irtegova IG, Cherepanova SV, Bagryanskaya IY, Nikulshin PV, Zibarev AV. Hysteretic Room-Temperature Magnetic Bistability of the Crystalline 4,7-Difluoro-1,3,2-Benzodithiazolyl Radical. Chempluschem 2024; 89:e202300736. [PMID: 38332534 DOI: 10.1002/cplu.202300736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 02/08/2024] [Accepted: 02/08/2024] [Indexed: 02/10/2024]
Abstract
The title radical R⋅, synthesized by reduction of the corresponding cation R+, is thermally stable up to ~380 K in the crystalline state under anaerobic conditions. With SQUID magnetometry, single-crystal and powder XRD, solid-state EPR and TG-DSC, reversible spin-Peierls transition between diamagnetic and paramagnetic states featuring ~10 K hysteretic loop is observed for R⋅ in the temperature range ~310-325 K; ΔH=~2.03 kJ mol-1 and ΔS=~6.23 J mol-1 K-1. The transition is accompanied by mechanical movement of the crystals, i. e., by thermosalient behavior. The low-temperature diamagnetic P-1 polymorph of R⋅ consists of R⋅2 π-dimers arranged in (…R⋅2…)n π-stacks; whereas the high-temperature paramagnetic P21/c polymorph, of uniform (…R⋅…)n π-stacks. With the XRD geometries, CASSCF and broken-symmetry DFT jointly suggest strong antiferromagnetic (AF) interactions within R⋅2 and weak between R⋅2 for the (…R⋅2…)n stacks; and moderate AF interactions between R⋅ for the (…R⋅…)n stacks. The fully hydrocarbon archetype of R⋅ does not reveal the aforementioned properties. Thus, the fluorinated 1,3,2-benzodithiazolyls pave a new pathway in the design and synthesis of metal-less magnetically-bistable materials.
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Affiliation(s)
- Alexander Yu Makarov
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Alexander A Buravlev
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
- Department of Natural Sciences National Research University, Novosibirsk State University, 630090, Novosibirsk, Russia
| | - Galina V Romanenko
- International Tomography Center, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Artem S Bogomyakov
- International Tomography Center, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Boris A Zakharov
- Boreskov Institute of Catalysis, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
- Department of Natural Sciences National Research University, Novosibirsk State University, 630090, Novosibirsk, Russia
| | - Vitaly A Morozov
- International Tomography Center, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Alexander S Sukhikh
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
- Department of Physics, National Research University - Novosibirsk State University, 630090, Novosibirsk, Russia
| | - Inna K Shundrina
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Leonid A Shundrin
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Irina G Irtegova
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Svetlana V Cherepanova
- Boreskov Institute of Catalysis, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Irina Yu Bagryanskaya
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Pavel V Nikulshin
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
- Current address: Topchiev Institute of Petrochemical Synthesis, Russian Academy of Sciences, 119991, Moscow, Russia
| | - Andrey V Zibarev
- Vorozhtsov Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences, 630090, Novosibirsk, Russia
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3
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Garg A, Haswell A, Hopkinson MN. C-F Bond Insertion: An Emerging Strategy for Constructing Fluorinated Molecules. Chemistry 2024; 30:e202304229. [PMID: 38270496 DOI: 10.1002/chem.202304229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/24/2024] [Accepted: 01/25/2024] [Indexed: 01/26/2024]
Abstract
C-F Insertion reactions, where an organic fragment formally inserts into a carbon-fluorine bond in a substrate, are highly attractive, yet largely unexplored, methods to prepare valuable fluorinated molecules. The inherent strength of C-F bonds and the resulting need for a large thermodynamic driving force to initiate C-F cleavage often leads to sequestering of the released fluoride in an unreactive by-product. Recently, however, several groups have succeeded in overcoming this challenge, opening up the study of C-F insertion as an efficient and highly atom-economical approach to prepare fluorinated compounds. In this article, the recent breakthroughs are discussed focusing on the key conceptual advances that allowed for both C-F bond cleavage and subsequent incorporation of the released fluoride into the product.
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Affiliation(s)
- Arushi Garg
- School of Natural and Environmental Sciences, Newcastle University, Bedson Building, NE1 7RU, Newcastle Upon Tyne, UK
| | - Alex Haswell
- School of Natural and Environmental Sciences, Newcastle University, Bedson Building, NE1 7RU, Newcastle Upon Tyne, UK
| | - Matthew N Hopkinson
- School of Natural and Environmental Sciences, Newcastle University, Bedson Building, NE1 7RU, Newcastle Upon Tyne, UK
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4
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He M, Piscelli BA, Cormanich RA, O’Hagan D. Conformational Analysis Explores the Role of Electrostatic Nonclassical CF···HC Hydrogen Bonding Interactions in Selectively Halogenated Cyclohexanes. J Org Chem 2024; 89:4009-4018. [PMID: 38441063 PMCID: PMC10949234 DOI: 10.1021/acs.joc.3c02868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/15/2024] [Accepted: 02/21/2024] [Indexed: 03/06/2024]
Abstract
The conformational equilibria of selectively halogenated cyclohexanes are explored both experimentally (VT-NMR) for 1,1,4,-trifluorocyclohexane 7 and by computational analysis (M06-2X/aug-cc-pVTZ level), with the latter approach extending to a wider range of more highly fluorinated cyclohexanes. Perhaps unexpectedly, 7ax is preferred over the 7eq conformation by ΔG = 1.06 kcal mol-1, contradicting the accepted norm for substituents on cyclohexanes. The axial preference is stronger again in 1,1,3,3,4,5,5,-heptafluorocyclohexane 9 (ΔG = 2.73 kcal mol-1) as the CF2 groups further polarize the isolated CH2 hydrogens. Theoretical decomposition of electrostatic and hyperconjugative effects by natural bond orbital analysis indicated that nonclassical hydrogen bonding (NCHB) between the C-4 fluorine and the diaxial hydrogens at C-2 and C-6 in cyclohexane 7 and 9 largely accounts for the observed bias. The study extended to changing fluorine (F) for chlorine (Cl) and bromine (Br) at the pseudoanomeric position in the cyclohexanes. Although these halogens do not become involved in NCHBs, they polarize the geminal -CHX- hydrogen at the pseudoanomeric position to a greater extent than fluorine, and consequent electrostatic interactions influence conformer stabilities.
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Affiliation(s)
- Mengfan He
- School
of Chemistry, Biomedical Sciences Research Complex, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, United Kingdom
| | - Bruno A. Piscelli
- Instituto
de Química, Universidade Estadual
de Campinas (UNICAMP), Monteiro Lobato Street, Campinas, Sao Paulo 13083-862, Brazil
| | - Rodrigo A. Cormanich
- Instituto
de Química, Universidade Estadual
de Campinas (UNICAMP), Monteiro Lobato Street, Campinas, Sao Paulo 13083-862, Brazil
| | - David O’Hagan
- School
of Chemistry, Biomedical Sciences Research Complex, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, United Kingdom
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5
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Maxwell M, Tan YJ, Lee R, Huber T, Otting G. Electrostatic Contribution to 19F Chemical Shifts in Fluorotryptophans in Proteins. Biochemistry 2023; 62:3255-3264. [PMID: 37934875 DOI: 10.1021/acs.biochem.3c00408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
DFT calculations indicate that the 19F chemical shifts of aromatic rings containing single fluorine substituents are sensitive to the electric fields and electric field gradients at the position of the fluorine atom. The present work explores whether long-range structure restraints can be gained from changes in 19F chemical shifts following mutations of charged to uncharged residues. 19F chemical shifts of fluorotryptophan residues were measured in two different proteins, GB1 and the NT* domain, following mutations of single asparagine residues to aspartic acid. Four different versions of fluorotryptophan were investigated, including 4-, 5-, 6-, and 7-fluorotryptophan, which were simultaneously installed by cell-free protein synthesis using 4-, 5-, 6-, and 7-fluoroindole as precursors for the tryptophan synthase present in the S30 extract. For comparison, the 1H chemical shifts of the corresponding nonfluorinated protein mutants produced with 13C-labeled tryptophan were also measured. The results show that the 19F chemical shifts respond more sensitively to the charge mutations than the 1H chemical shifts in the nonfluorinated references, but the chemical shift changes were much smaller than predicted by DFT calculations of fluoroindoles in the electric field of a partial charge in vacuum, indicating comprehensive dielectric shielding by water and protein. No straightforward correlation with the location of the charge mutation could be established.
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Affiliation(s)
- Michael Maxwell
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Research School of Chemistry, Australian National University, Canberra 2601, Australian Capital Territory, Australia
| | - Yi Jiun Tan
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Research School of Chemistry, Australian National University, Canberra 2601, Australian Capital Territory, Australia
| | - Richmond Lee
- School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong 2500, New South Wales, Australia
| | - Thomas Huber
- Research School of Chemistry, Australian National University, Canberra 2601, Australian Capital Territory, Australia
| | - Gottfried Otting
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Research School of Chemistry, Australian National University, Canberra 2601, Australian Capital Territory, Australia
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6
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Sudoł-Tałaj S, Kucwaj-Brysz K, Podlewska S, Kurczab R, Satała G, Mordyl B, Głuch-Lutwin M, Wilczyńska-Zawal N, Jastrzębska-Więsek M, Czarnota-Łydka K, Kurowska K, Kubacka M, Żesławska E, Nitek W, Olejarz-Maciej A, Doroz-Płonka A, Partyka A, Latacz G, Wesołowska A, Handzlik J. Hydrophobicity modulation via the substituents at positions 2 and 4 of 1,3,5-triazine to enhance therapeutic ability against Alzheimer's disease for potent serotonin 5-HT 6R agents. Eur J Med Chem 2023; 260:115756. [PMID: 37657272 DOI: 10.1016/j.ejmech.2023.115756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Revised: 08/07/2023] [Accepted: 08/23/2023] [Indexed: 09/03/2023]
Abstract
Alzheimer's disease (AD), a neurodegenerative disorder with a complex aetiology, is the most common memory dysfunction particularly affecting the elderly. Various protein targets have been classified to be involved in the AD treatment, including 5-HT6 receptor (5-HT6R). So far, the 5-HT6R ligands obtained by our research group have become a good basis for hydrophobicity modulation to give a chance for more effective action toward AD by additional influence on target enzymes, e.g. cyclin-dependent kinase 5 (CDK5). In the search for 5-HT6R agents with additional inhibitory action on the enzyme, a series of 25 new 1,3,5-triazines (7-31) as modifications of lead, 4-[1-(2,5-dichlorophenoxy)propyl]-6-(4-methylpiperazin-1-yl)-1,3,5-triazine-2-amine (6), was rationally designed. Molecular modelling, synthesis, crystallographic studies, in vitro biological assays and behavioral studies in vivo were performed. The new triazines showed high affinity (Ki < 100 nM) and selectivity for 5-HT6R. The most effective one, 4-[1-(2,5-difluorophenoxy)propyl]-6-(4-methylpiperazin-1-yl)-1,3,5-triazine-2-amine (8), exhibited the strong antagonistic action towards 5-HT6R (Ki = 5 nM, pKb = 8.16), had an impact on the memory processes in the Novel Object Recognition test and displayed anxiolytic-like activity in the Elevated Plus Maze test in rats. Moreover, it had the antiplatelet effect as well as very good permeability (PAMPA model), high metabolic stability (RLMs) and satisfactory safety in vitro. Although the CDK5 inhibitory effects in vitro for the tested compounds (8, 10, 14, 18, 26-31) missed the potency expected from in silico simulations, the novel antagonist (8) with a very satisfying pharmacological and ADMET profile can serve as a new lead structure in further searches for innovative therapy against AD with accompanying symptoms.
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Affiliation(s)
- Sylwia Sudoł-Tałaj
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland; Doctoral School of Medical and Health Sciences, Jagiellonian University Medical College, Św. Łazarza 16, PL 31-530, Kraków, Poland
| | - Katarzyna Kucwaj-Brysz
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Sabina Podlewska
- Maj Institute of Pharmacology, Polish Academy of Sciences, Department of Medicinal Chemistry, Smętna 12, PL 31-343, Kraków, Poland
| | - Rafał Kurczab
- Maj Institute of Pharmacology, Polish Academy of Sciences, Department of Medicinal Chemistry, Smętna 12, PL 31-343, Kraków, Poland
| | - Grzegorz Satała
- Maj Institute of Pharmacology, Polish Academy of Sciences, Department of Medicinal Chemistry, Smętna 12, PL 31-343, Kraków, Poland
| | - Barbara Mordyl
- Department of Pharmacobiology, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Monika Głuch-Lutwin
- Department of Pharmacobiology, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Natalia Wilczyńska-Zawal
- Department of Clinical Pharmacy, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Magdalena Jastrzębska-Więsek
- Department of Clinical Pharmacy, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Kinga Czarnota-Łydka
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland; Doctoral School of Medical and Health Sciences, Jagiellonian University Medical College, Św. Łazarza 16, PL 31-530, Kraków, Poland
| | - Kinga Kurowska
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Monika Kubacka
- Department of Pharmacodynamics, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Ewa Żesławska
- Institute of Biology and Earth Sciences, Pedagogical University of Krakow, Podchorążych 2, PL 30-084, Kraków, Poland
| | - Wojciech Nitek
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, PL 30-387, Kraków, Poland
| | - Agnieszka Olejarz-Maciej
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Agata Doroz-Płonka
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Anna Partyka
- Department of Clinical Pharmacy, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Gniewomir Latacz
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Anna Wesołowska
- Department of Clinical Pharmacy, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland
| | - Jadwiga Handzlik
- Department of Technology and Biotechnology of Drugs, Faculty of Pharmacy, Jagiellonian University, Medical College, Medyczna 9, PL 30-688, Kraków, Poland.
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7
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Runikhina SA, Tsygankov AA, Afanasyev OI, Chusov D. Reductive α-alkylation of ketones with aldehydes at atmospheric pressure of carbon monoxide: the effect of fluoride activation in ruthenium catalysis. MENDELEEV COMMUNICATIONS 2023. [DOI: 10.1016/j.mencom.2023.01.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
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8
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Liu H, Cheng S, Yang Y, Wang C, Zhu S, Zhao F. Strong Hydrophobic and Ultraviolet Reflective Film from Fluorinated Polyisoprene with Microphase Separation via Thiol‐epoxy Click Chemistry. MACROMOL CHEM PHYS 2022. [DOI: 10.1002/macp.202200100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Huan Liu
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
| | - Shihong Cheng
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
| | - Yadong Yang
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
| | - Chunlin Wang
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
| | - Shijiang Zhu
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
| | - Fuchun Zhao
- School of Materials Science and Engineering Key Laboratory of Advanced Materials of Tropical Island Resources, Ministry of Education Hainan University Haikou 570228 China
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9
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Vulpetti A, Lingel A, Dalvit C, Schiering N, Oberer L, Henry C, Lu Y. Efficient Screening of Target-Specific Selected Compounds in Mixtures by 19F NMR Binding Assay with Predicted 19F NMR Chemical Shifts. ChemMedChem 2022; 17:e202200163. [PMID: 35475323 DOI: 10.1002/cmdc.202200163] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 04/26/2022] [Indexed: 11/06/2022]
Abstract
Ligand-based 19 F NMR screening is a highly effective and well-established hit-finding approach. The high sensitivity to protein binding makes it particularly suitable for fragment screening. Different criteria can be considered for generating fluorinated fragment libraries. One common strategy is to assemble a large, diverse, well-designed and characterized fragment library which is screened in mixtures, generated based on experimental 19 F NMR chemical shifts. Here, we introduce a complementary knowledge-based 19 F NMR screening approach, named 19 Focused screening, enabling the efficient screening of putative active molecules selected by computational hit finding methodologies, in mixtures assembled and on-the-fly deconvoluted based on predicted 19 F NMR chemical shifts. In this study, we developed a novel approach, named LEFshift , for 19 F NMR chemical shift prediction using rooted topological fluorine torsion fingerprints in combination with a random forest machine learning method. A demonstration of this approach to a real test case is reported.
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Affiliation(s)
- Anna Vulpetti
- Novartis Pharma AG, Global Discovery Chemistry, Novartis Campus, 4002, Basel, SWITZERLAND
| | - Andreas Lingel
- Novartis Institutes for BioMedical Research Basel, Global Discovery Chemistry, SWITZERLAND
| | - Claudio Dalvit
- Novartis Institutes for BioMedical Research Basel, Protease Platform, SWITZERLAND
| | - Nikolaus Schiering
- Novartis Institutes for BioMedical Research Basel, Protease Platform, SWITZERLAND
| | - Lukas Oberer
- Novartis Institutes for BioMedical Research Basel, Global Discovery Chemistry, SWITZERLAND
| | - Chrystelle Henry
- Novartis Institutes for BioMedical Research Basel, Protein Science, SWITZERLAND
| | - Yipin Lu
- Novartis Institutes for BioMedical Research Basel, Global Discovery Chemistry, SWITZERLAND
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10
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Ribeiro dos Santos JB, Ribeiro da Silva MR. Small molecule CGRP receptor antagonists for the preventive treatment of migraine: A review. Eur J Pharmacol 2022; 922:174902. [DOI: 10.1016/j.ejphar.2022.174902] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 03/10/2022] [Accepted: 03/17/2022] [Indexed: 01/29/2023]
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11
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Mehreen S, Ullah A, Nadeem H, Dege N, Naseer MM. Synthesis, solid state self-assembly driven by antiparallel π⋯π stacking and {⋯H-C-C-F} 2 dimer synthons, and in vitro acetyl cholinesterase inhibition activity of phenoxy pendant isatins. RSC Adv 2022; 12:1788-1796. [PMID: 35425213 PMCID: PMC8979220 DOI: 10.1039/d1ra08286h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 01/03/2022] [Indexed: 12/12/2022] Open
Abstract
A series of novel phenoxy pendant isatins PI1-12 have been synthesized in excellent yields by a simple nucleophilic substitution reaction involving isatins and 1-(2-bromoethoxy)-4-substituted benzenes, and characterized by their FT-IR, 1H NMR, 13C NMR and GC-MS data, and in the case of PI4 by its single crystal X-ray analysis. The solid-state structure of PI4 showed an intriguing and unique 1D-supramolecular chain-based self-assembled structure, the driving force of which is mainly the strong antiparallel π⋯π stacking and {⋯H-C-C-F}2 dimer synthons. This compound not only highlights the potential of the isatin moiety in forming strong antiparallel π⋯π stacking interactions but also provides a platform to have considerable insight into the nature, strength and directionality of much debated π-π and C-H⋯F-C interactions. The in vitro biological studies revealed that three phenoxy pendant isatins PI1, PI2 and PI4 are highly potent inhibitors of acetylcholinesterase enzyme with IC50 values of 0.52 ± 0.073 μg ml-1, 0.72 ± 0.012 μg ml-1 and 0.68 ± 0.011 μg ml-1, respectively, showing comparable activity to the standard drug, donepezil (IC50 = 0.73 ± 0.015 μg ml-1). A simple and efficient synthesis of phenoxy pendant isatins PI1-12 from inexpensive and commercially available starting materials, and their high potential of acetyl cholinesterase inhibition provide an attractive opportunity to find more effective medication for Alzheimer's disease (AD).
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Affiliation(s)
- Saba Mehreen
- Department of Chemistry, Quaid-i-Azam University Islamabad 45320 Pakistan
| | - Aman Ullah
- Department of Agricultural, Food and Nutritional Science, 4-10 Agriculture/Forestry Centre, University of Alberta Edmonton AB T6G 2P5 Canada
| | - Humaira Nadeem
- Department of Pharmaceutical Chemistry, Riphah Institute of Pharmaceutical Sciences, Riphah International University G-7/4 Islamabad Pakistan
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics Kurupelit 55139 Samsun Turkey
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12
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Terajima T, Suzuki T, Horikoshi R, Doi S, Nakamura M, Kobayashi F, Durkin KA, Shimomura K, Nakamura S, Yamamoto K, Tomizawa M. Deciphering the Flupyrimin Binding Surface on the Insect Nicotinic Acetylcholine Receptor. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:9551-9556. [PMID: 34374535 DOI: 10.1021/acs.jafc.1c03241] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
A novel insecticide flupyrimin (FLP) with a trifluoroacetyl pharmacophore acts as an antagonist at the insect nicotinic acetylcholine receptor (nAChR). This investigation examines a hypothesis that the FLP C(O)CF3 moiety is primarily recognized by the β subunit-face in the ligand-binding pocket (interface between α and β subunits) of the insect nAChR. Accordingly, we evaluate the atomic interaction between a fluorine atom of FLP and the partnering amino acid side chain on the β subunit employing a recombinant hybrid nAChR consisting of aphid Mpα2 and rat Rβ2 subunits (with a mutation at T77 on the Rβ2). The H-donating T77R, T77K, T77N, or T77Q nAChR enhances the FLP binding potency relative to that of the wild-type receptor, whereas the affinity of neonicotinoid imidaclprid (IMI) with a nitroguanidine pharmacophore remains unchanged. These results facilitate the establishment of the unique FLP molecular recognition at the Mpα2/Mpβ1 interface structural model, thereby underscoring a distinction in its binding mechanism from IMI.
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Affiliation(s)
- Takehito Terajima
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Tomonori Suzuki
- Department of Molecular Microbiology, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Ryo Horikoshi
- Agricultural and Veterinary Research Labs, Agricultural and Veterinary Division, Meiji Seika Pharma Co., Ltd., Yokohama, Kanagawa 222-8567, Japan
| | - Shohei Doi
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Mizuki Nakamura
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Fumika Kobayashi
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Kathleen A Durkin
- College of Chemistry, University of California, Berkeley, Berkeley, California 94720-1460, United States
| | - Kenji Shimomura
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
| | - Satoshi Nakamura
- Agricultural and Veterinary Research Labs, Agricultural and Veterinary Division, Meiji Seika Pharma Co., Ltd., Yokohama, Kanagawa 222-8567, Japan
| | - Kazumi Yamamoto
- Agricultural and Veterinary Research Labs, Agricultural and Veterinary Division, Meiji Seika Pharma Co., Ltd., Yokohama, Kanagawa 222-8567, Japan
| | - Motohiro Tomizawa
- Department of Chemistry, Faculty of Life Sciences, Tokyo University of Agriculture, Setagaya, Tokyo 156-8502, Japan
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