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Ho MH, Rousseau R, Roberts JAS, Wiedner ES, Dupuis M, DuBois DL, Bullock RM, Raugei S. Ab Initio-Based Kinetic Modeling for the Design of Molecular Catalysts: The Case of H2 Production Electrocatalysts. ACS Catal 2015. [DOI: 10.1021/acscatal.5b01152] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ming-Hsun Ho
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - Roger Rousseau
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - John A. S. Roberts
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - Eric S. Wiedner
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - Michel Dupuis
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - Daniel L. DuBois
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - R. Morris Bullock
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
| | - Simone Raugei
- Center
for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K1-83, Richland, Washington 99352, United States
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Allolio C, Salas-Illanes N, Desmukh YS, Hansen MR, Sebastiani D. H-Bonding Competition and Clustering in Aqueous LiI. J Phys Chem B 2013; 117:9939-46. [DOI: 10.1021/jp4033468] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Christoph Allolio
- Department of Chemistry, Martin-Luther Universität Halle-Wittenberg, von-Danckelmann-Platz
4, 06120 Halle/Saale, Germany
| | - Nora Salas-Illanes
- Department of Chemistry, Martin-Luther Universität Halle-Wittenberg, von-Danckelmann-Platz
4, 06120 Halle/Saale, Germany
| | - Yogesh S. Desmukh
- Department of Chemical
Engineering and Chemistry, Eindhoven University of Technology, P.O. Box 513, Eindhoven, Netherlands
- Dutch Polymer Institute (DPI), P.O. Box 902, 5600AX Eindhoven, The Netherlands
| | - Michael Ryan Hansen
- Dutch Polymer Institute (DPI), P.O. Box 902, 5600AX Eindhoven, The Netherlands
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz,
Germany
| | - Daniel Sebastiani
- Department of Chemistry, Martin-Luther Universität Halle-Wittenberg, von-Danckelmann-Platz
4, 06120 Halle/Saale, Germany
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Walewski Ł, Forbert H, Marx D. Revealing the Subtle Interplay of Thermal and Quantum Fluctuation Effects on Contact Ion Pairing in Microsolvated HCl. Chemphyschem 2012; 14:817-26. [DOI: 10.1002/cphc.201200695] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Revised: 10/23/2012] [Indexed: 11/07/2022]
Affiliation(s)
- Łukasz Walewski
- Lehrstuhl für Theoretische Chemie, Ruhr‐Universität Bochum, Universitätsstrasse 150, 44801 Bochum (Germany), Fax: (+49) 234‐32‐14045
| | - Harald Forbert
- Lehrstuhl für Theoretische Chemie, Ruhr‐Universität Bochum, Universitätsstrasse 150, 44801 Bochum (Germany), Fax: (+49) 234‐32‐14045
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie, Ruhr‐Universität Bochum, Universitätsstrasse 150, 44801 Bochum (Germany), Fax: (+49) 234‐32‐14045
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Sophy KB, Kuo JL. Structure and vibrational spectra of H+(HF)n (n=2–9) clusters: An ab initio study. J Chem Phys 2009; 131:224307. [DOI: 10.1063/1.3268502] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
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Yoshikawa T, Motegi H, Kakizaki A, Takayanagi T, Shiga M, Tachikawa M. Path-integral molecular dynamics simulations of glycine·(H2O)n (n=1–7) clusters on semi-empirical PM6 potential energy surfaces. Chem Phys 2009. [DOI: 10.1016/j.chemphys.2009.09.026] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Schwartz CP, Uejio JS, Saykally RJ, Prendergast D. On the importance of nuclear quantum motions in near edge x-ray absorption fine structure spectroscopy of molecules. J Chem Phys 2009; 130:184109. [DOI: 10.1063/1.3125509] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Simon C, Ciccotti G, Klein ML. Computing the Acidity of Liquids via Ab Initio Molecular Dynamics. Chemphyschem 2007; 8:2072-6. [PMID: 17722221 DOI: 10.1002/cphc.200700250] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Christian Simon
- Université P. et M. Curie-Paris 6, Laboratoire LI2C-UMR CNRS 7612, case courrier 51, 4 Place Jussieu, 75252 Pariscedex05, France.
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Marx D. Proton transfer 200 years after von Grotthuss: insights from ab initio simulations. Chemphyschem 2007; 7:1848-70. [PMID: 16929553 DOI: 10.1002/cphc.200600128] [Citation(s) in RCA: 613] [Impact Index Per Article: 36.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
In the last decade, ab initio simulations and especially Car-Parrinello molecular dynamics have significantly contributed to the improvement of our understanding of both the physical and chemical properties of water, ice, and hydrogen-bonded systems in general. At the heart of this family of in silico techniques lies the crucial idea of computing the many-body interactions by solving the electronic structure problem "on the fly" as the simulation proceeds, which circumvents the need for pre-parameterized potential models. In particular, the field of proton transfer in hydrogen-bonded networks greatly benefits from these technical advances. Here, several systems of seemingly quite different nature and of increasing complexity, such as Grotthuss diffusion in water, excited-state proton-transfer in solution, phase transitions in ice, and protonated water networks in the membrane protein bacteriorhodopsin, are discussed in the realms of a unifying viewpoint.
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Affiliation(s)
- Dominik Marx
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
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Bhargava BL, Balasubramanian S. Insights into the Structure and Dynamics of a Room-Temperature Ionic Liquid: Ab Initio Molecular Dynamics Simulation Studies of 1-n-Butyl-3-methylimidazolium Hexafluorophosphate ([bmim][PF6]) and the [bmim][PF6]−CO2 Mixture. J Phys Chem B 2007; 111:4477-87. [PMID: 17417900 DOI: 10.1021/jp068898n] [Citation(s) in RCA: 141] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ab initio molecular dynamics (AIMD) studies have been carried out on liquid 1-n-butyl-3-methylimidazolium hexafluorophosphate ([bmim][PF6]) and its mixture with CO2 using the Car-Parrinello molecular dynamics (CPMD) method. Results from AIMD and empirical potential molecular dynamics (MD) have been compared and were found to differ in some respects. With a strong resemblance to the crystal, the AIMD simulated neat liquid exhibits many cation-anion hydrogen bonds, a feature that is almost absent in the MD results. The anions were observed to be strongly polarized in the condensed phase. The addition of CO2 increased the probability of this hydrogen bond formation. CO2 molecules in the vicinity of the ions of [bmim][PF6] exhibit larger deviations from linearity in their instantaneous configurations. The polar environment of the liquid induces a dipole moment in CO2, lifting the degeneracy of its bending mode. The calculated splitting in the vibrational mode compares well with infrared spectroscopic data. The solvation of CO2 in [bmim][PF6] is primarily facilitated by the anion, as seen from the radial and spatial distribution functions. CO2 molecules were found to be aligned tangential to the PF6 spheres with their most probable location being the octahedral voids of the anion. The structural data obtained from AIMD simulations can serve as a benchmark to refine interaction potentials for this important room-temperature ionic liquid.
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Affiliation(s)
- B L Bhargava
- Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India.
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Murakhtina T, Heuft J, Meijer EJ, Sebastiani D. First Principles and Experimental 1H NMR Signatures of Solvated Ions: The Case of HCl(aq). Chemphyschem 2006; 7:2578-84. [PMID: 17072940 DOI: 10.1002/cphc.200600385] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A combined experimental and ab initio study is presented of the 1H NMR chemical shift distribution of aqueous hydrogen chloride solution as a function of acid concentration, based on Car-Parrinello molecular dynamics simulations and fully periodic NMR chemical-shift calculations. The agreement of computed and experimental spectra is very good. From first-principles calculations, we can show that the individual contributions of Eigen and Zundel ions, regular water molecules, and the chlorine solvation shell to the NMR line are very distinct and almost independent of the acid concentration. From the computed instantaneous NMR distributions, it is further possible to characterize the average variation in hydrogen-bond strength of the different complexes.
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Affiliation(s)
- Tatiana Murakhtina
- Max-Planck-Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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Laasonen K, Larrucea J, Sillapää A. Ab Initio Molecular Dynamics Study of a Mixture of HF(aq) and HCl(aq)†. J Phys Chem B 2006; 110:12699-706. [PMID: 16800604 DOI: 10.1021/jp054876+] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We have studied a mixture of HF and HCl molecules in water using Car-Parrinello ab initio molecular dynamics (CPMD). We have done simulations with 1 HF and 3 HCl molecules, 3 HF and 4 HCl, 6 HF and 8 HCl (6/8 simulation), and 14 HF molecules. All simulations consist of 32 molecules, and they were 10-96 ps long. The HF dissociation probability was around 30%, and HCl's was more than 90%. The solvation of the HF molecule was much better than the solvation of HCl. The solvation environment of F, both the F- ion and the F in HF, did not depend much on the acids concentration, whereas the Cl coordination numbers were rather sensitive to the concentration. In the 6/8 simulation, all XH-Y (X, Y = F, Cl) type molecules were observed and the FH-F was the most probable. In general, the molecular structures in mixed aqueous acid systems were similar to the pure HF(aq) and HCl(aq) systems.
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Affiliation(s)
- Kari Laasonen
- Department of Chemistry, University of Oulu, P.O. Box 3000, 90014 Oulu, Finland.
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Xiang J, He J, Yin Y, Li D. Anionic hydrogen-bonded chains , coexisting with Ni(II) complexes of polyamine-based ligands. INORG CHEM COMMUN 2006. [DOI: 10.1016/j.inoche.2005.12.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Simon C, Klein ML. Ab Initio Molecular Dynamics Simulation of a Water-Hydrogen Fluoride Equimolar Mixture. Chemphyschem 2005; 6:148-53. [PMID: 15688658 DOI: 10.1002/cphc.200400284] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Hydrogen fluoride and water can be mixed in any proportion. The resulting solutions have unique acidic properties. In particular, hydrogen fluoride undergoes a weak-to-strong acidity transition with increasing concentration of HF To supplement the knowledge already obtained on dilute or moderately concentrated solutions and gas-phase aggregates, an equimolar mixture is studied here by Car-Parrinello molecular dynamics. The natures of the ions and of the complexes formed in the equimolar liquid were determined. Specifically, H3O+, H5O2+, FH-OH2, and HF2- were spontaneously obtained while only hydronium and fluoride ions pre-exist in the equimolar crystal. The behaviour of the proton in the equimolar liquid was compared with mixtures of other proportions simulated previously in an attempt to relate proton dynamics to acidity. In the same way, the behaviour of HF2- was also examined. In this case, proton localization and transfer appeared to be driven by the fluctuating environment of the solvated ion.
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Affiliation(s)
- Christian Simon
- Laboratoire LI2C-CNRS UMR76 12, Université P. et M. Curie 4 Place Jussieu, 75252 Paris, France.
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