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Bartlett MA, Kazez AH, Schaefer HF, Allen WD. Riddles of the structure and vibrational dynamics of HO 3 resolved near the ab initio limit. J Chem Phys 2019; 151:094304. [PMID: 31492062 DOI: 10.1063/1.5110291] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The hydridotrioxygen (HO3) radical has been investigated in many previous theoretical and experimental studies over several decades, originally because of its possible relevance to the tropospheric HOx cycle but more recently because of its fascinating chemical bonding, geometric structure, and vibrational dynamics. We have executed new, comprehensive research on this vexing molecule via focal point analyses (FPA) to approach the ab initio limit of optimized geometric structures, relative energies, complete quartic force fields, and the entire reaction path for cis-trans isomerization. High-order coupled cluster theory was applied through the CCSDT(Q) and even CCSDTQ(P) levels, and CBS extrapolations were performed using cc-pVXZ (X = 2-6) basis sets. The cis isomer proves to be higher than trans by 0.52 kcal mol-1, but this energetic ordering is achieved only after the CCSDT(Q) milestone is reached; the barrier for cis → trans isomerization is a minute 0.27 kcal mol-1. The FPA central re(O-O) bond length of trans-HO3 is astonishingly long (1.670 Å), consistent with the semiexperimental re distance we extracted from microwave rotational constants of 10 isotopologues using FPA vibration-rotation interaction constants (αi). The D0(HO-O2) dissociation energy converges to a mere 2.80 ± 0.25 kcal mol-1. Contrary to expectation for such a weakly bound system, vibrational perturbation theory performs remarkably well with the FPA anharmonic force fields, even for the torsional fundamental near 130 cm-1. Exact numerical procedures are applied to the potential energy function for the torsional reaction path to obtain energy levels, tunneling rates, and radiative lifetimes. The cis → trans isomerization occurs via tunneling with an inherent half-life of 1.4 × 10-11 s and 8.6 × 10-10 s for HO3 and DO3, respectively, thus resolving the mystery of why the cis species has not been observed in previous experiments executed in dissipative environments that allow collisional cooling of the trans-HO3 product. In contrast, the pure ground eigenstate of the cis species in a vacuum is predicted to have a spontaneous radiative lifetime of about 1 h and 5 days for HO3 and DO3, respectively.
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Affiliation(s)
- Marcus A Bartlett
- Center for Computational Quantum Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Arianna H Kazez
- Center for Computational Quantum Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Wesley D Allen
- Center for Computational Quantum Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
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A theoretical characterization of reactions of HOOO radical with guanine: formation of 8-oxoguanine. Struct Chem 2018. [DOI: 10.1007/s11224-018-1095-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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3
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Viana RB. On the structure of the simplest triselenide compound model and the stabilizing effect of water molecules. Polyhedron 2017. [DOI: 10.1016/j.poly.2017.03.029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Kim JM, Hong SY, Kim SJ. Theoretical Study for the Structures and Binding Energies of HOOO-(H 2O) n(n=1~5) Cluster. JOURNAL OF THE KOREAN CHEMICAL SOCIETY-DAEHAN HWAHAK HOE JEE 2015. [DOI: 10.5012/jkcs.2015.59.5.387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Viegas LP, Varandas AJC. Role of (H2O)n (n = 2–3) Clusters on the HO2 + O3 Reaction: A Theoretical Study. J Phys Chem B 2015; 120:1560-8. [DOI: 10.1021/acs.jpcb.5b07691] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Luís P. Viegas
- Centro
de Química
and Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| | - António J. C. Varandas
- Centro
de Química
and Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
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Song HS, Seo HI, Shin CH, Kim SJ. Theoretical Study on the Hydrogen-Bonding Effect of H 2O n-H 2O m(n=1-4, m=1-4) Dimers. JOURNAL OF THE KOREAN CHEMICAL SOCIETY-DAEHAN HWAHAK HOE JEE 2015. [DOI: 10.5012/jkcs.2015.59.2.117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Denis PA, Huelmo CP. New trends along hydrogen polyoxides: unusually long oxygen–oxygen bonds in H2O6and H2O7. Mol Phys 2014. [DOI: 10.1080/00268976.2014.928385] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Cerkovnik J, Plesničar B. Recent advances in the chemistry of hydrogen trioxide (HOOOH). Chem Rev 2013; 113:7930-51. [PMID: 23808683 DOI: 10.1021/cr300512s] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Janez Cerkovnik
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana , 1000 Ljubljana, Slovenia
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Stabilization of metastable hydrogen trioxide (HOOOH) and the hydrotrioxyl radical (HOOO) by complexation with sulfuric acid. A theoretical study. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.01.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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Hoy EP, Schwerdtfeger CA, Mazziotti DA. Relative Energies and Geometries of the cis- and trans-HO3 Radicals from the Parametric 2-Electron Density Matrix Method. J Phys Chem A 2013; 117:1817-25. [DOI: 10.1021/jp3105562] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Erik P. Hoy
- Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637,
United States
| | - Christine A. Schwerdtfeger
- Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637,
United States
| | - David A. Mazziotti
- Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637,
United States
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Varandas AJC. Is HO3 minimum cis or trans? An analytic full-dimensional ab initio isomerization path. Phys Chem Chem Phys 2011; 13:9796-811. [DOI: 10.1039/c1cp20221a] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Anglada JM, Olivella S, Solé A. On the Dissociation of Ground State trans-HOOO Radical: A Theoretical Study. J Chem Theory Comput 2010; 6:2743-50. [DOI: 10.1021/ct100358e] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Josep M. Anglada
- Institut de Química Avançada de Catalunya, CSIC, Jordi Girona 18-26, 08034-Barcelona, Catalonia, Spain, and Departament de Química Física and Institut de Química Teòrica i Computacional, Universitat de Barcelona, Martí i Franquès 1, 08028-Barcelona, Catalonia, Spain
| | - Santiago Olivella
- Institut de Química Avançada de Catalunya, CSIC, Jordi Girona 18-26, 08034-Barcelona, Catalonia, Spain, and Departament de Química Física and Institut de Química Teòrica i Computacional, Universitat de Barcelona, Martí i Franquès 1, 08028-Barcelona, Catalonia, Spain
| | - Albert Solé
- Institut de Química Avançada de Catalunya, CSIC, Jordi Girona 18-26, 08034-Barcelona, Catalonia, Spain, and Departament de Química Física and Institut de Química Teòrica i Computacional, Universitat de Barcelona, Martí i Franquès 1, 08028-Barcelona, Catalonia, Spain
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Voukides AC, Konrad KM, Johnson RP. Competing Mechanistic Channels in the Oxidation of Aldehydes by Ozone. J Org Chem 2009; 74:2108-13. [DOI: 10.1021/jo8026593] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alicia C. Voukides
- Department of Chemistry, University of New Hampshire, Durham, New Hampshire 03824
| | - Kaleen M. Konrad
- Department of Chemistry, University of New Hampshire, Durham, New Hampshire 03824
| | - Richard P. Johnson
- Department of Chemistry, University of New Hampshire, Durham, New Hampshire 03824
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Denis PA, Ornellas FR. Theoretical Characterization of Hydrogen Polyoxides: HOOH, HOOOH, HOOOOH, and HOOO. J Phys Chem A 2008; 113:499-506. [DOI: 10.1021/jp808795e] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pablo A. Denis
- Computational Nanotechnology, DETEMA, Facultad de Química, UDELAR, CC 1157, 11800 Montevideo, Uruguay, and Instituto de Química, Universidade de São Paulo, Caixa Postal 26077, São Paulo, São Paulo, 05513-970, Brazil
| | - Fernando R. Ornellas
- Computational Nanotechnology, DETEMA, Facultad de Química, UDELAR, CC 1157, 11800 Montevideo, Uruguay, and Instituto de Química, Universidade de São Paulo, Caixa Postal 26077, São Paulo, São Paulo, 05513-970, Brazil
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Kovačič S, Koller J, Cerkovnik J, Tuttle T, Plesničar B. Dihydrogen Trioxide Clusters, (HOOOH)n (n = 2−4), and the Hydrogen-Bonded Complexes of HOOOH with Acetone and Dimethyl Ether: Implications for the Decomposition of HOOOH. J Phys Chem A 2008; 112:8129-35. [DOI: 10.1021/jp8036928] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Saša Kovačič
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, U.K
| | - Jože Koller
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, U.K
| | - Janez Cerkovnik
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, U.K
| | - Tell Tuttle
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, U.K
| | - Božo Plesničar
- Department of Chemistry, Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia, and WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, U.K
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Semes’ko DG, Khursan SL. Quantum-chemical calculations of the structure of trioxyl radicals. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2008. [DOI: 10.1134/s0036024408080074] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Derro EL, Sechler TD, Murray C, Lester MI. Infrared Action Spectroscopy of the OD Stretch Fundamental and Overtone Transitions of the DOOO Radical. J Phys Chem A 2008; 112:9269-76. [DOI: 10.1021/jp801232a] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Erika L. Derro
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Timothy D. Sechler
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Craig Murray
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Marsha I. Lester
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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Mazziotti DA. Determining the Energy Gap between the Cis and Trans Isomers of HO3- Using Geometry Optimization within the Anti-Hermitian Contracted Schrödinger and Coupled Cluster Methods. J Phys Chem A 2007; 111:12635-40. [DOI: 10.1021/jp076097u] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- David A. Mazziotti
- Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637
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Chalmet S, Ruiz-López MF. The structures of ozone and HOx radicals in aqueous solution from combined quantum/classical molecular dynamics simulations. J Chem Phys 2007; 124:194502. [PMID: 16729820 DOI: 10.1063/1.2198818] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Ozone in aqueous solution decomposes through a complex mechanism that involves initial reaction with a hydroxide ion followed by formation of a variety of oxidizing species such as HO, HO(2), and HO(3) radicals. Though a number of hydrogen-bonded complexes have been described in the gas phase, both theoretically and experimentally, the structures of ozone and HO(x) in liquid water remain uncertain. In this work, combined quantum/classical computer simulations of aqueous solutions of these species have been reported. The results show that ozone undergoes noticeable electron polarization but it does not participate in hydrogen bonds with liquid water. The main contribution of the solvation energy comes from dispersion forces. In contrast, HO(x) radicals form strong hydrogen bonds. They are better proton donors but weaker proton acceptors than water. Their electronic and geometrical structures are significantly modified by the solvent, especially in the case of HO(3). In all cases, fluctuations in amplitudes of electronic properties are considerable, suggesting that solvent effects might play a crucial role on oxidation mechanisms initiated by ozone in liquid water. These mechanisms are important in a broad range of domains, such as atmospheric processes, plant response to ambient ozone, and medical and industrial applications.
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Affiliation(s)
- Stéphanie Chalmet
- Equipe de Chimie et Biochimie Théoriques, UMR CNRS-UHP No. 7565, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-lès-Nancy Cedex, France
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Mansergas A, Anglada JM, Olivella S, Ruiz-López MF, Martins-Costa M. On the nature of the unusually long OO bond in HO3 and HO4 radicals. Phys Chem Chem Phys 2007; 9:5865-73. [DOI: 10.1039/b711464h] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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