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Roy TK. Performance of Vibrational Self-Consistent Field Theory for Accurate Potential Energy Surfaces: Fundamentals, Excited States, and Intensities. J Phys Chem A 2022; 126:608-622. [PMID: 35050620 DOI: 10.1021/acs.jpca.1c09989] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The performance of vibrational structure calculations beyond harmonic approximation in the framework of the vibrational self-consistent field method with second-order perturbation corrections (VSCF-PT2) is investigated in conjunction with very accurate potential energy surfaces (PESs) given by various coupled-cluster electronic structure theories. The quality of anharmonic calculations depends on the accuracy of the underlying multidimensional PES obtained from its functional form, which is given by the level of electronic structure theory. Two such highest levels of typical coupled-cluster electronic structure methods, CCSD and the ″gold standard″ CCSD(T), along with their variants such as CCD, CR-CCL (completely renormalized CR-CC(2,3) approach), and CCSD(TQ) are tested for the construction of accurate anharmonic potentials without any fitting or ad hoc scaling and using cc-pVTZ basis sets. The accuracy of VSCF-PT2 theory in comparison to experimental values is tested for a series of 16 molecules with 135 fundamental bands, 64 overtones, and combination bands and also for 39 intensities. It is found that CCD and CCSD bind the potential tighter than CCSD(T) and the computed VSCF-PT2 transitions are more blue-shifted showing higher deviation from the experiment. In general, VSCF-PT2 results computed at the CCSD(T) potential offer a good cost/accuracy ratio, with the mean absolute deviation and the mean absolute percentage error with the experiment being ∼16 cm-1 and 1.38, respectively, for fundamentals. Additionally, while the CR-CCL and CCSD(TQ) methods offer similar levels of accuracies as compared to CCSD(T), the former offers a better accuracy/cost ratio than the latter and is a suitable alternative to CCSD(T).
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Affiliation(s)
- Tapta Kanchan Roy
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Samba, Jammu and Kashmir 181143, India
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2
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Morisawa Y, Suga A. Effects of intermolecular interactions on absorption intensities of the fundamental and the first, second, and third overtones of OH stretching vibrations of methanol and t-butanol‑d 9 in n-hexane studied by visible/near-infrared/infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:121-125. [PMID: 29221935 DOI: 10.1016/j.saa.2017.11.059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 11/24/2017] [Accepted: 11/27/2017] [Indexed: 06/07/2023]
Abstract
Visible (Vis), near-infrared (NIR) and IR spectra in the 15,600-2500cm-1 region were measured for methanol, methanol-d3, and t-butanol-d9 in n-hexane to investigate effects of intermolecular interaction on absorption intensities of the fundamental and the first, second, and third overtones of their OH stretching vibrations. The relative area intensities of OH stretching bands of free and hydrogen-bonded species were plotted versus the vibrational quantum number using logarithm plots (V=1-4) for 0.5M methanol, 0.5M methanol‑d3, and 0.5M t-butanol-d9 in n-hexane. In the logarithm plots the relative intensities of free species yield a linear dependence irrespective of the solutes while those of hydrogen-bonded species deviate significantly from the linearity. The observed results suggest that the modifications in dipole moment functions of the OH bond induced by the formation of the hydrogen bondings change transient dipole moment, leading to the deviations of the dependences of relative absorption intensities on the vibrational quantum number from the linearity.
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Affiliation(s)
- Yusuke Morisawa
- Department of Chemistry, School of Science and Engineering, Kindai University, Higashi-Osaka, Osaka, Japan.
| | - Arisa Suga
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Gakuen, Sanda, Hyogo 669-1337, Japan
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3
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Otaki H, Yagi K, Ishiuchi SI, Fujii M, Sugita Y. Anharmonic Vibrational Analyses of Pentapeptide Conformations Explored with Enhanced Sampling Simulations. J Phys Chem B 2016; 120:10199-10213. [DOI: 10.1021/acs.jpcb.6b06672] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | - Shun-ichi Ishiuchi
- Laboratory
for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory
for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Yuji Sugita
- RIKEN Advanced Institute for Computational Science, 7-1-26 Minatojima-Minamimachi,
Chuo-ku, Kobe, Hyogo 650-0047, Japan
- RIKEN Quantitative Biology Center, 1-6-5 Minatojima-Minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
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4
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Sibaev M, Crittenden DL. An efficient and numerically stable procedure for generating sextic force fields in normal mode coordinates. J Chem Phys 2016; 144:214107. [DOI: 10.1063/1.4953080] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- M. Sibaev
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand
| | - D. L. Crittenden
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand
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Asami H, Tokugawa M, Masaki Y, Ishiuchi SI, Gloaguen E, Seio K, Saigusa H, Fujii M, Sekine M, Mons M. Effective Strategy for Conformer-Selective Detection of Short-Lived Excited State Species: Application to the IR Spectroscopy of the N1H Keto Tautomer of Guanine. J Phys Chem A 2016; 120:2179-84. [DOI: 10.1021/acs.jpca.6b01194] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hiroya Asami
- Department
of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-J2-12, Nagatsuta-cho Midori, Yokohama 226-8501, Japan
- LIDYL,
CEA, CNRS, Université Paris-Saclay, CEA Saclay, 91191 Gif-sur-Yvette, France
| | - Munefumi Tokugawa
- Department
of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-J2-12, Nagatsuta-cho Midori, Yokohama 226-8501, Japan
| | - Yoshiaki Masaki
- Department
of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-J2-12, Nagatsuta-cho Midori, Yokohama 226-8501, Japan
| | - Shun-ichi Ishiuchi
- Laboratory
for Chemistry and Life Science, Tokyo Institute of Technology, 4259-R1-15,
Nagatsuta-cho Midori, Yokohama 226-8503, Japan
| | - Eric Gloaguen
- LIDYL,
CEA, CNRS, Université Paris-Saclay, CEA Saclay, 91191 Gif-sur-Yvette, France
| | - Kohji Seio
- Department
of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-J2-12, Nagatsuta-cho Midori, Yokohama 226-8501, Japan
| | - Hiroyuki Saigusa
- Graduate
School of Bio- and Nanosystem Science, Yokohama City University, Yokohama 236-0027, Japan
| | - Masaaki Fujii
- Laboratory
for Chemistry and Life Science, Tokyo Institute of Technology, 4259-R1-15,
Nagatsuta-cho Midori, Yokohama 226-8503, Japan
| | - Mitsuo Sekine
- Department
of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-J2-12, Nagatsuta-cho Midori, Yokohama 226-8501, Japan
| | - Michel Mons
- LIDYL,
CEA, CNRS, Université Paris-Saclay, CEA Saclay, 91191 Gif-sur-Yvette, France
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Czarnecki MA, Morisawa Y, Futami Y, Ozaki Y. Advances in Molecular Structure and Interaction Studies Using Near-Infrared Spectroscopy. Chem Rev 2015; 115:9707-44. [DOI: 10.1021/cr500013u] [Citation(s) in RCA: 146] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Yusuke Morisawa
- Department
of Chemistry, School of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Yoshisuke Futami
- Department
of Biological and Chemical Systems Engineering, National Institute of Technology, Kumamoto College, Yatsushiro, Kumamoto 866-8501, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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7
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Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of 7-azaindole dimer. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1553-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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8
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Yagi K, Otaki H. Vibrational quasi-degenerate perturbation theory with optimized coordinates: Applications to ethylene and trans-1,3-butadiene. J Chem Phys 2014; 140:084113. [DOI: 10.1063/1.4866365] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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10
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Daido M, Kawashima Y, Tachikawa M. Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of base pairs. J Comput Chem 2013; 34:2403-11. [DOI: 10.1002/jcc.23399] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Revised: 06/28/2013] [Accepted: 07/05/2013] [Indexed: 11/12/2022]
Affiliation(s)
- Masashi Daido
- Quantum Chemistry Division; Graduate School of Science; Yokohama City University; Seto 22-2, Kanazawa-ku; Yokohama; 236-0027; Japan
| | - Yukio Kawashima
- Quantum Chemistry Division; Graduate School of Science; Yokohama City University; Seto 22-2, Kanazawa-ku; Yokohama; 236-0027; Japan
| | - Masanori Tachikawa
- Quantum Chemistry Division; Graduate School of Science; Yokohama City University; Seto 22-2, Kanazawa-ku; Yokohama; 236-0027; Japan
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11
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Ishiuchi SI, Yamada K, Chakraborty S, Yagi K, Fujii M. Gas-phase spectroscopy and anharmonic vibrational analysis of the 3-residue peptide Z-Pro-Leu-Gly-NH2 by the laser desorption supersonic jet technique. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.12.038] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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12
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Asami H, Yagi K, Ohba M, Urashima SH, Saigusa H. Stacked base-pair structures of adenine nucleosides stabilized by the formation of hydrogen-bonding network involving the two sugar groups. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.01.038] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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13
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Shimozono Y, Yamada K, Ishiuchi SI, Tsukiyama K, Fujii M. Revised conformational assignments and conformational evolution of tyrosine by laser desorption supersonic jet laser spectroscopy. Phys Chem Chem Phys 2013; 15:5163-75. [DOI: 10.1039/c3cp43573c] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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14
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Chan M, Manzhos S, Carrington T, Yamashita K. Parameterized Bases for Calculating Vibrational Spectra Directly from ab Initio Data Using Rectangular Collocation. J Chem Theory Comput 2012; 8:2053-61. [DOI: 10.1021/ct300248n] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Matthew Chan
- Department
of Chemistry and
Chemical Biology, McMaster University, Hamilton, Ontario, L8S 4M1,
Canada
| | - Sergei Manzhos
- Research Center
for Advanced
Science and Technology (RCAST), University of Tokyo, 4-6-1, Komaba,
Meguro-ku, Tokyo 153-8904, Japan
| | - Tucker Carrington
- Chemistry Department, Queen’s
University, Kingston, Ontario, K7L 3N6, Canada
| | - Koichi Yamashita
- Department of Chemical System
Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656,
Japan
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15
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Christiansen O. Selected new developments in vibrational structure theory: potential construction and vibrational wave function calculations. Phys Chem Chem Phys 2012; 14:6672-87. [DOI: 10.1039/c2cp40090a] [Citation(s) in RCA: 107] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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16
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17
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18
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Seidler P, Kaga T, Yagi K, Christiansen O, Hirao K. On the coupling strength in potential energy surfaces for vibrational calculations. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.10.018] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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