Applications of the Static Quenching of Rhodamine B by Carbon Nanotubes

Tapered Optical Fiber Sensor Coated with Single-Walled Carbon Nanotubes for Dye Sensing Application

The present study aimed to improve the optical sensing performance of tapered optical fiber sensors toward aqueous Rhodamine B solution of different concentrations by applying single-walled carbon nanotubes (SWCNTs). The functional coating was formed on the surface of the tapered optical fiber sensor using an aerosol layer-by-layer deposition method. Before deposition, the SWCNTs were processed with multistage liquid-phase treatment in order to form a stable dispersion. The effect of SWCNT treatment was investigated through Raman spectroscopy. The deposition of 220 layers caused a reduction of up to 60% of the initial optical power of radiation propagating through the optical fiber core. The optical fiber sensor coated with SWCNTs demonstrated significantly higher sensitivity compared to a non-coated sensor in the range of 2-32 mg/L of Rhodamine B concentration in an aqueous solution. The experimental results demonstrated that the sensitivity was increased 10 times from 32 (mg/L)^-1, for the non-coated sensor, up to 317 (mg/L)^-1 after SWCNT coating deposition. Moreover, the SWCNT-coated sensor demonstrated high repeatability that allowed for the evaluation of the concentration regardless of the previously analyzed dye concentration.

Cyclic vs. acyclic alkyne towards Hg2+ ion detection: combined experimental and theoretical studies

Comparison between the alkynes in terminal and internally conjugated 1,3-diyne systems produces differences in molecular recognition, maintaining the HSAB principle.

Organic Functionalized Carbon Nanostructures for Solar Energy Conversion

This review presents an overview of the use of organic functionalized carbon nanostructures (CNSs) in solar energy conversion schemes. Our attention was focused in particular on the contribution of organic chemistry to the development of new hybrid materials that find application in dye-sensitized solar cells (DSSCs), organic photovoltaics (OPVs), and perovskite solar cells (PSCs), as well as in photocatalytic fuel production, focusing in particular on the most recent literature. The request for new materials able to accompany the green energy transition that are abundant, low-cost, low-toxicity, and made from renewable sources has further increased the interest in CNSs that meet all these requirements. The inclusion of an organic molecule, thanks to both covalent and non-covalent interactions, in a CNS leads to the development of a completely new hybrid material able of combining and improving the properties of both starting materials. In addition to the numerical data, which unequivocally state the positive effect of the new hybrid material, we hope that these examples can inspire further research in the field of photoactive materials from an organic point of view.

Microwave-Assisted Neat Synthesis of a Ferrocene Appended Phenolphthalein Diyne: A Designed Synthetic Scaffold for Hg2+ Ion

A C₂-symmetric internally conjugated 1,3-dialkyne system 5, containing phenolphthalein as a fluorophore and ferrocene as a redox moiety, has been synthesized via a microwave-assisted synthetic procedure. Compound 5 was synthesized by Cu-catalyzed Glaser-Hay coupling using a microwave reactor in neat condition for the first time. Compound 5 was found to be highly selective toward Fe³⁺, Cu²⁺, and Hg²⁺ ions via multichannels. Interestingly, Fe³⁺ and Cu²⁺ ions simply promote the oxidation of ferrocene unit to ferrocenium ion without binding to the receptor, whereas Hg²⁺ binds with the receptor 5 (ΔE_1/2 = 71 mV). The oxidation and binding phenomena were investigated by optical and electrochemical analyses. Furthermore, the binding site of Hg²⁺ ion with our designed probe was confirmed by ¹H, ¹³C NMR and IR titrations, which indicated that conjugated dialkyne unit interacts with Hg²⁺ ion by a favorable soft-soft interaction. Both receptor 5 and its metal complex, [5·2Hg²⁺], are stable in the physiological pH range (pH = 6-7) and thermally stable up to 78 °C. The experimental results of metal binding have been further supported by quantum chemical calculations (DFT), which explore the favorable geometry of the free ligand as well as its Hg²⁺ complex.

Real-Time Visualization and Dynamics of Boron Nitride Nanotubes Undergoing Brownian Motion

We report the first real-time imaging of individualized boron nitride nanotubes (BNNTs) via stabilization with a rhodamine surfactant and fluorescence microscopy. We study the rotational and translational diffusion and find them to agree with predictions based on a confined, high-aspect-ratio rigid rod undergoing Brownian motion. We find that the behavior of BNNTs parallels that of individualized carbon nanotubes (CNTs), indicating that BNNTs could also be used as model rigid rods to study soft matter systems, while avoiding the experimental disadvantages of CNTs due to their strong light absorption. The use and further development of our technique and findings will accelerate the application of BNNTs from material engineering to biological studies.

Yttrium Oxide as a Strongly Adsorbing but Nonquenching Surface for DNA Oligonucleotides

A large number of nanomaterials can strongly adsorb DNA and quench fluorescence, such as graphene oxide, gold nanoparticles, and most metal oxides. On the other hand, noncationic nanomaterials that adsorb DNA but cannot quench fluorescence are less known. These materials are attractive for studying the mechanism of DNA-based surface reactions. Y₂O₃ was found to have this property. Herein, we used fluorescently labeled oligonucleotides as probes to study the mechanism of DNA adsorption. The fluorescence was quenched at low concentrations of Y₂O₃ and then recovered and even enhanced with higher Y₂O₃ concentrations. The reason was attributed to the intermolecular quenching by the DNA bases of the neighboring strands. The fluorescence enhancement was due to breaking of the intramolecular fluorophore/DNA interactions, and the most enhancement was observed with a Cy3-labeled DNA. DNA adsorption followed the Langmuir isotherm on Y₂O₃. Desorption experiments suggested that DNA was adsorbed through the phosphate backbone, with FAM-G₁₅ and FAM-C₁₅ adsorbed more strongly than the other two DNA homopolymers. With a high salt concentration, no fluorescence change was observed, suggesting that the DNA adsorbed in a folded state reducing intermolecular quenching. Overall, Y₂O₃ might be useful as a model surface for investigating DNA hybridization on a surface.

A review on nanomaterial-based electrochemical, optical, photoacoustic and magnetoelastic methods for determination of uranyl cation

This review (with 177 refs) gives an overview on nanomaterial-based methods for the determination of uranyl ion (UO₂²⁺) by different types of transducers. Following an introduction into the field, a first large section covers the fundamentals of selective recognition of uranyl ion by receptors such as antibodies, aptamers, DNAzymes, peptides, microorganisms, organic ionophores (such as salophens, catechols, phenanthrolines, annulenes, benzo-substituted macrocyclic diamides, organophosphorus receptors, calixarenes, crown ethers, cryptands and β-diketones), by ion imprinted polymers, and by functionalized nanomaterials. A second large section covers the various kinds of nanomaterials (NMs) used, specifically on NMs for electrochemical signal amplification, on NMs acting as signal tags or carriers for signal tags, on fluorescent NMs, on NMs for colorimetric assays, on light scattering NMs, on NMs for surface enhanced Raman scattering (SERS)-based assays and wireless magnetoelastic detection systems. We then discuss detection strategies, with subsections on electrochemical methods (including ion-selective and potentiometric systems, voltammetric systems and impedimetric systems). Further sections treat colorimetric, fluorometric, resonance light scattering-based, SERS-based and photoacoustic methods, and wireless magnetoelastic detection. The current state of the art is summarized, and current challenges are discussed at the end. Graphical abstract An overview is given on nanomaterial-based methods for the detection of uranyl ion by different types of transducers (such as electrochemical, optical, photoacoustic, magnetoelastic, etc) along with a critical discussion of their limitations, benefits and application to real samples.

A convenient method of attaching fluorescent dyes on single-walled carbon nanotubes pre-wrapped with DNA molecules

We demonstrated the attachment of different kinds of dyes, Uranine, Rhodamime 800 (R800), and Indocyanine green (ICG), to single-walled carbon nanotubes pre-wrapped with single-stranded DNAs (ssDNA-SWCNTs). A new but simple method was employed, in which a dye solution was added to ssDNA-SWCNTs that had been prepared beforehand in the conventional way. Resulting conjugates of dyes, DNA, and SWCNTs were precisely evaluated by ultraviolet to near-infrared fluorescence/absorbance spectrometry and atomic force microscopy. In particular, simultaneous measurements of fluorescence and absorbance spectroscopy enabled us to find differences in the behaviors of the dyes on SWCNT surfaces. As a result, the fluorescence/absorbance spectra of dyes showed significant changes upon adsorption on SWCNTs. The fluorescence/absorbance peaks of Uranine, R800, and ICG were quenched by 41.3/2.8%, 72.3/48.9%, and 88.3/45.0%, respectively, in the presence of 11.5 μg/mL SWCNTs. We concluded firstly that by pre-wrapping SWCNTs with ssDNA, stable hybrids with these components were obtained even if the dyes used were relatively hydrophobic and secondly that Uranine retained light absorption on the surface of SWCNT while R800 and ICG did not.

Probing the modulated formation of gold nanoparticles-beta-lactoglobulin corona complexes and their applications

Understanding the interactions between proteins and nanoparticles (NPs) along with the underlying structural and dynamic information is of utmost importance to exploit nanotechnology for biomedical applications. Upon adsorption onto a NP surface, proteins form a well-organized layer, termed the corona, that dictates the identity of the NP-protein complex and governs its biological pathways. Given its high biological relevance, in-depth molecular investigations and applications of NPs-protein corona complexes are still scarce, especially since different proteins form unique corona patterns, making identification of the biomolecular motifs at the interface critical. In this work, we provide molecular insights and structural characterizations of the bio-nano interface of a popular food-based protein, namely bovine beta-lactoglobulin (β-LG), with gold nanoparticles (AuNPs) and report on our investigations of the formation of corona complexes by combined molecular simulations and complementary experiments. Two major binding sites in β-LG were identified as being driven by citrate-mediated electrostatic interactions, while the associated binding kinetics and conformational changes in the secondary structures were also characterized. More importantly, the superior stability of the corona led us to further explore its biomedical applications, such as in the smartphone-based point-of-care biosensing of Escherichia coli (E. coli) and in the computed tomography (CT) of the gastrointestinal (GI) tract through oral administration to probe GI tolerance and functions. Considering their biocompatibility, edible nature, and efficient excretion through defecation, AuNPs-β-LG corona complexes have shown promising perspectives for future in vitro and in vivo clinical settings.

Surfen-Assembled Graphene Oxide for Fluorescence Turn-On Detection of Sulfated Glycosaminoglycans in Biological Matrix

Sulfated glycosaminoglycans (GAGs) not only serve as a biomarker for mucopolysaccharidoses disease but also participate in various biological processes, such as blood clot medication (heparin) and signal transduction (heparan sulfate). However, few fluorescent sensors, such as 1,9-dimethylmethylene blue, have been developed for the detection of sulfated GAGs in the real world. Herein, we fabricated a surfen/few-layer graphene oxide (FLGO) nanocomplex for sensing sulfated GAGs in biological fluids. Surfen molecules are self-assembled onto the surface of FLGO through electrostatic attraction, and their fluorescence was then quenched by the creation of the FLGO-surfen complex (static quenching) and partially combined with the energy transfer from surfen to FLGO (dynamic quenching). The presence of sulfated GAGs resulted in the fluorescence recovery through the formation of the surfen-GAGs complex, which exhibits weak binding to FLGO and keeps surfen molecules away from the FLGO surface. Because FLGO efficiently reduced the fluorescence background from surfen and competed with sulfated GAGs for binding to surfen, surfen-assembled FLGO exhibited higher sensitivity and better selectivity for sulfated GAGs than surfen. The strategy mentioned above was exemplified by the analysis of heparin in human plasma and sulfated GAGs in an artificial cerebrospinal fluid; the limits of detection at a signal-to-noise ratio of 3 for heparin, dermatan sulfate, and heparin sulfate were determined to be 30, 30, and 60 ng/mL, respectively.

A sensing mechanism for the detection of carbon nanotubes using selective photoluminescent probes based on ionic complexes with organic dyes

The multifunctional properties of carbon nanotubes (CNTs) make them a powerful platform for unprecedented innovations in a variety of practical applications. As a result of the surging growth of nanotechnology, nanotubes present a potential problem as an environmental pollutant, and as such, an efficient method for their rapid detection must be established. Here, we propose a novel type of ionic sensor complex for detecting CNTs - an organic dye that responds sensitively and selectively to CNTs with a photoluminescent signal. The complexes are formed through Coulomb attractions between dye molecules with uncompensated charges and CNTs covered with an ionic surfactant in water. We demonstrate that the photoluminescent excitation of the dye can be transferred to the nanotubes, resulting in selective and strong amplification (up to a factor of 6) of the light emission from the excitonic levels of CNTs in the near-infrared spectral range, as experimentally observed via excitation-emission photoluminescence (PL) mapping. The chirality of the nanotubes and the type of ionic surfactant used to disperse the nanotubes both strongly affect the amplification; thus, the complexation provides sensing selectivity towards specific CNTs. Additionally, neither similar uncharged dyes nor CNTs covered with neutral surfactant form such complexes. As model organic molecules, we use a family of polymethine dyes with an easily tailorable molecular structure and, consequently, tunable absorbance and PL characteristics. This provides us with a versatile tool for the controllable photonic and electronic engineering of an efficient probe for CNT detection.

Enhanced intracellular delivery of small molecules and drugs via non-covalent ternary dispersions of single-wall carbon nanotubes

Non-covalent dispersions of carbon nanotubes using albumin proteins pre-loaded with hydrophobic molecules increase intracellular delivery and promote cell-mediated release of small molecules and drugs for therapy.

Selective detection and quantification of carbon nanotubes in soil

Carbon nanotubes (CNTs) have been widely applied in many industrial fields. As world production of CNTs increases, the risk of environmental exposure to CNTs also increases. Therefore, to evaluate the impact on the environment, many cell and animal studies have reported on the toxicity of CNTs. It is important to determine the degree of contamination of CNTs in soil and to find the pollution pathways for assessment of the environmental toxicity of CNTs. However, selective detection methods for CNTs in soil or water have rarely been reported. In the present study, a novel technique was developed to quantify the amount of CNTs in soil mixtures using fluorescent SYBR Green I dye after isolation of the CNTs with specific DNA oligomers. As a result, a limit of detection of CNTs in soil was obtained in the range of 250 ppb. This limit can easily be extended to the level of 10 ppb using magnetic well plates with a greater capacity. This method also worked well in the presence of graphene oxide and could be applied to the detection of CNTs in a variety of surroundings (e.g., fish and other tissues).

Excitonic energy transfer in polymer wrapped carbon nanotubes in gradually grown nanoassemblies

We investigate the exciton energy transfer (ET) in nanoassemblies (nanotube based aggregates) formed by polymer wrapped single-walled carbon nanotubes (SWNTs) using photoluminescence (PL) spectroscopy and simulation. The distinctive feature of this study is the gradual growth of such nanostructures in aqueous medium induced by increasing the concentration of porphyrin molecules stitching nanotube-polymer complexes in densely packed assemblies. Experimental dependencies of PL intensity on the porphyrin concentration for different types of semiconducting SWNTs demonstrate step-like behavior controlled by the amount of bound nanotubes and are in good agreement with the simulating model. The simulation algorithm determines the criterion of the aggregate formation depending on the number of porphyrin molecules per tube and the cascade exciton energy transfer between neighboring semiconducting nanotubes of different chiralities. Aggregates of small sizes (up to six-eight individual tubes) contain mostly semiconducting species, while aggregates of a larger size (up to several tens of tubes) incorporate metallic SWNTs, inducing strong PL quenching. From the fitting procedure, an ET rate of 0.6 × 10(10) s(-1) has been determined which is consistent with the center to center distance (∼2.3 nm) between adjacent tubes separated by polymer and porphyrin molecules. The threshold of the dimer formation corresponds to one porphyrin molecule per ∼20 nm of tube lengths that was supported by molecular dynamics simulation. These findings provide insight into the ET mechanism in SWNT nanoassemblies of variable sizes, which can be gradually controlled by the external factor (the concentration of porphyrin molecules).

Deploying RNA and DNA with Functionalized Carbon Nanotubes

Carbon nanotubes internalize into cells and are potential molecular platforms for siRNA and DNA delivery. A comprehensive understanding of the identity and stability of ammoniumfunctionalized carbon nanotube (f-CNT)-based nucleic acid constructs is critical to deploying them in vivo as gene delivery vehicles. This work explored the capability of f-CNT to bind single- and double-strand oligonucleotides by determining the thermodynamics and kinetics of assembly and the stoichiometric composition in aqueous solution. Surprisingly, the binding affinity of f-CNT and short oligonucleotide sequences was in the nanomolar range, kinetics of complexation were extremely rapid, and from one to five sequences were loaded per nanotube platform. Mechanistic evidence for an assembly process that involved electrostatic, hydrogen-bonding and π-stacking bonding interactions was obtained by varying nanotube functionalities, oligonucleotides, and reaction conditions. ³¹P-NMR and spectrophotometric fluorescence emission data described the conditions required to assemble and stably bind a DNA or RNA cargo for delivery in vivo and the amount of oligonucleotide that could be transported. The soluble oligonucleic acid-f-CNT supramolecular assemblies were suitable for use in vivo. Importantly, key evidence in support of an elegant mechanism by which the bound nucleic acid material can be 'off-loaded' from the f-CNT was discovered.

Luminophores and Carbon Nanotubes: An Odd Combination?

Studies on the exohedral and endohedral functionalization of carbon nanotubes (CNTs) with organic or inorganic chromophores and luminophores have increased substantially in recent years, making use of covalent, supramolecular, electrostatic, and host-guest preparative strategies. Research in this field has fundamental interest because the mixing of two radically different components (molecule/metal complex versus CNT) typically affords materials with exceptional electronic and structural properties while also offering the possibility of studying in detail the interactions between molecules/complexes and nanomaterials. Application perspectives can be also envisaged, particularly in the areas of light-to-electricity (e.g., photovoltaics) and electricity-to-light (e.g., electroluminescence) conversion. Here, we focus in particular on some recent results obtained in the preparation of luminescent hybrids in which suitably designed emitting moieties, placed inside or outside of carbon nanotubes through noncovalent interactions, can afford brightly glowing black photoluminescent nanostructures.

Efficient singlet-singlet energy transfer in a novel host-guest assembly composed of an organic cavitand, aromatic molecules, and a clay nanosheet

A supramolecular host-guest assembly composed of a cationic organic cavitand (host), neutral aromatic molecules (guests), and an anionic clay nanosheet has been prepared and demonstrated that in this arrangement efficient singlet-singlet energy transfer could take place. The novelty of this system is the use of a cationic organic cavitand that enabled neutral organic molecules to be placed on an anionic saponite nanosheet. Efficient singlet-singlet energy transfer between neutral pyrene and 2-acetylanthracene enclosed within a cationic organic cavitand (octa amine) arranged on a saponite nanosheet was demonstrated through steady-state and time-resolved emission studies. The high efficiency was realized from the suppression of aggregation, segregation, and self-fluorescence quenching. We believe that the studies presented here using a novel supramolecular assembly have expanded the types of molecules that could serve as candidates for efficient energy-transfer systems, such as in an artificial light-harvesting system.

Graphene oxide as a quencher for fluorescent assay of amino acids, peptides, and proteins

Understanding the interaction between graphene oxide (GO) and the biomolecules is fundamentally essential, especially for disease- and drug-related peptides and proteins. In this study, GO was found to strongly interact with amino acids (tryptophan and tyrosine), peptides (Alzheimer's disease related amyloid beta 1-40 and type 2 diabetes related human islet amyloid polypeptide), and proteins (drug-related bovine and human serum albumin) by fluorescence quenching, indicating GO was a universal quencher for tryptophan or tyrosine related peptides and proteins. The quenching mechanism between GO and tryptophan (Trp) or tyrosine (Tyr) was determined as mainly static quenching, combined with dynamic quenching (Förster resonance energy transfer). Different quenching efficiency between GO and Trp or Tyr at different pHs indicated the importance of electrostatic interaction during quenching. Hydrophobic interaction also participated in quenching, which was proved by the presence of nonionic amphiphilic copolymer Pluronic F127 (PF127) in GO dispersion. The strong hydrophobic interaction between GO and PF127 efficiently blocked the hydrophobic interaction between GO and Trp or Tyr, lowering the quenching efficiency.

Regulation of the collisional self-quenching of fluorescence in clay/porphyrin complex by strong host-guest interaction

This paper proposes a novel methodology to improve noncollisional photochemical reactions such as Förster resonance energy transfer on solid surfaces. Since an excited guest molecule densely adsorbed on the solid surfaces is quenched by an unfavorable interaction between guests in general, the photochemical reactions such as electron and energy transfers tend to be inefficient compared to those in homogeneous systems. In this work, the mechanism of unfavorable quenching process of dyes on the clay surface as a typical solid surface for the photochemical energy transfer was systematically investigated by using a series of porphyrin derivatives. As a result, it was found that the quenching rate constants of excited guest dye determined by the time-resolved fluorescence measurements correlated well with the strengths of coulombic interaction between host and guest. The strong coulombic interaction should suppress the mobility and collision frequency of guests on the clay surface; thus, the collision of guest molecules was revealed as the origin of unfavorable quenching for photochemical reactions on the clay surface. According to this principle, we will be able to construct efficient photochemical reaction systems without any quenching process, such as efficient energy transfers toward an artificial light-harvesting system. In fact, we have already realized almost 100% energy transfer by the suppression of quenching process on the clay surface (e.g., J. Am. Chem. Soc.2011, 133, 14280-14286).

A simple one-step assay platform based on fluorescence quenching of macroporous silicon

We synthesized 3D macroporous silicon through a simple electrochemical dissolution process and systematically estimated its protein adsorption and effect on fluorescence emission. Compared with conventional 2D polystyrene plate, the macroporous silicon showed a superior protein adsorption capacity and significant fluorescence quenching effect. We developed a 3D macroporous silicon-based adenosine assay system through the following fabrication process: streptavidin molecules that have been immobilized on the surface of macroporous silicon are attached with biotin-linked and adenosine-specific DNA aptamer, followed by hybridization between the attached aptamer and fluorescent chemical (carboxytetramethylrhodamine/CTMR) that is conjugated with a short complementary DNA sequence. In the absence of adenosine, the aptamer-CTMR complexes remain closely attached to the surface of porous silicon, hence fluorescence being significantly quenched. Upon binding to adenosine, the DNA aptamer is subject to structure switching that leads to dissociation of CTMR from DNA aptamer, and consequently the CTMR fluorescence is restored, indicating a simple one-step assay of adenosine. Compared to the conventional 2D PS and ZnO nanorods-based assays, adenosine at much lower (sub-micromolar) concentration was successfully detected through the 3D macroporous silicon-based assay. The three-dimensionally and densely immobilized aptamer probes and effective fluorescence quenching on the surface of macroporous silicon enables adenosine to be detected at lower levels. Although the adenosine detection is reported here as a proof-of-concept, the developed macroporous silicon-based simple one-step assay platform can be applied in general to fluorescence quenching -based detection of many other biomolecules.

Fluorophore and dye-assisted dispersion of carbon nanotubes in aqueous solution

DNA short oligo, surfactant, peptides, and polymer-assisted dispersion of single-walled carbon nanotube (SWCNTs) in aqueous solution have been intensively studied. It has been suggested that van der Waals interaction, π-π stacking, and hydrophobic interaction are major factors that account for the SWCNTs dispersion. Fluorophore and dye molecules such as Rhodamine B and fluorescein have both hydrophilic and hydrophobic moieties. These molecules also contain π-conjugated systems that can potentially interact with SWCNTs to induce its dispersion. Through a systematic study, here we show that SWCNTs can be dispersed in aqueous solution in the presence of various fluorophore or dye molecules. However, the ability of a fluorophore or dye molecule to disperse SWCNTs is not correlated with the stability of the fluorophore/dye-SWCNT complex, suggesting that the on-rate of fluorophore/dye binding to SWCNTs may dominate the efficiency of this process. We also examined the uptake of fluorophore molecules by mammalian cells when these molecules formed complexes with SWCNTs. The results can have potential applications in the delivery of poor cell-penetrating fluorophore molecules.

Marker-free on-the-fly fabrication of graphene devices based on fluorescence quenching

Graphene has been dominating the electronic research community recently, with a brisk surge in proposals for its use in novel devices. The aspirations of 2D-carbon-based electronics largely rely on the availability of a mass-production technique to obtain wafer-scale graphene circuits. In this paper, we take a first step towards fulfilling this aspiration by demonstrating a rapid prototyping route for graphene-based devices. The method is based on our observation that graphene quenches the fluorescence from dyes. Utilizing this property, we use a confocal microscope to identify graphene flakes and perform the required lithography steps, bypassing the need for markers and other infrastructure such as atomic force microscopy or e-beam lithography. The versatility of this technique enables it to harbour ambitions of an automated process for large scale in situ assembly of graphene-based circuits.