1
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Barkale HV, Dey N. Tuning Sensing Efficacy of Oligo(phenylenevinylene) Based Chromogenic Probes: Effect of Alkyl Substituents on Metal Ion Detection at Micelle-Water Interface. Chem Asian J 2024; 19:e202400058. [PMID: 38436497 DOI: 10.1002/asia.202400058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 02/15/2024] [Accepted: 02/25/2024] [Indexed: 03/05/2024]
Abstract
In this work, we conducted a comparative analysis of the metal ion sensing capabilities of two pyridine-end oligo p-phenylenevinylene compounds featuring different alkyl substituents (-C4H9 and -C16H33) within a micelle medium. Our findings revealed a correlation between the positioning of the probe molecules within the micelle and the length of the alkyl chains, impacting their self-assembly tendencies and optical characteristics. The compound with shorter alkyl chains demonstrated a superior affinity towards Hg2+ ions, whereas exposure to the compound with longer alkyl substituent resulted in a color-changing response with both Cu2+and Hg2+ ions. Intriguingly, the sensitivity towards Hg2+ ions heightened with increasing alkyl chain length. This trend persisted in non-polar solvents like THF. The capacity to modulate sensing efficacy solely by adjusting the length of the alkyl chains represents a relatively uncommon occurrence in the existing literature. This discovery suggests promising prospects for engineering sensory devices equipped with adaptable sensitivity.
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Affiliation(s)
- Harshal V Barkale
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad, 500078, Telangana, India
| | - Nilanjan Dey
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad, 500078, Telangana, India
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2
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Nguyen LH, Tran DP, Truong TN. Computational Study on the Nature of Bonding between Silver Ions and Nitrogen Ligands. ACS OMEGA 2022; 7:45231-45238. [PMID: 36530335 PMCID: PMC9753169 DOI: 10.1021/acsomega.2c05707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Accepted: 10/20/2022] [Indexed: 06/17/2023]
Abstract
In this paper, the nature of silver ion-nitrogen atom bonding in the complexation with ammonia, azomethine, pyridine, and hydrogen cyanide from one to four coordinations is studied at the B97-1 level of density functional theory. The results indicate that the two-coordinated complex of the silver ion with different nitrogen ligands representing sp, sp2, and sp3 orbital hybridizations is the most stable form having the shortest Ag+-N bond distance, highest vibrational frequencies, largest bond order, and favorable Gibbs free energy of formation. Natural bond orbital analyses further show that σ-donation from the nitrogen lone pair to the silver empty 5s orbital is dominant in the dative metal-ligand bonding character with N-sp3 having the largest contribution among the different N atomic orbital hybridizations. Natural energy decomposition analyses further show that the two-coordinated complexes have enhanced electrostatic interaction and charge transfer energies over other coordination types leading them to be more stable. For this reason, the two-coordinated complexes would be a better representation for studying bonding and interaction in silver ion complexes.
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Affiliation(s)
- Lam H. Nguyen
- Institute
for Computational Science and Technology, Ho Chi Minh City700000, Vietnam
- Faculty
of Chemistry, University of Science, Ho Chi Minh City700000, Vietnam
- Vietnam
National University, Ho Chi Minh
City 7000000, Vietnam
| | - Dung P. Tran
- Faculty
of Chemistry, Ho Chi Minh City University
of Education, 280 An Duong Vuong Street, District 5, Ho
Chi Minh City7000000, Vietnam
| | - Thanh N. Truong
- Department
of Chemistry, University of Utah, Salt Lake City, Utah84112, United States
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3
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Corinti D, Maccelli A, Chiavarino B, Schütz M, Bouchet A, Dopfer O, Crestoni ME, Fornarini S. Cation-π Interactions between a Noble Metal and a Polyfunctional Aromatic Ligand: Ag + (benzylamine). Chemistry 2022; 28:e202200300. [PMID: 35412692 PMCID: PMC9325466 DOI: 10.1002/chem.202200300] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Indexed: 12/21/2022]
Abstract
The structure of an isolated Ag+ (benzylamine) complex is investigated by infrared multiple photon dissociation (IRMPD) spectroscopy complemented with quantum chemical calculations of candidate geometries and their vibrational spectra, aiming to ascertain the role of competing cation-N and cation-π interactions potentially offered by the polyfunctional ligand. The IRMPD spectrum has been recorded in the 800-1800 cm-1 fingerprint range using the IR free electron laser beamline coupled with an FT-ICR mass spectrometer at the Centre Laser Infrarouge d'Orsay (CLIO). The resulting IRMPD pattern points toward a chelate coordination (N-Ag+ -π) involving both the amino nitrogen atom and the aromatic π-system of the phenyl ring. The gas-phase reactivity of Ag+ (benzylamine) with a neutral molecular ligand (L) possessing either an amino/aza functionality or an aryl group confirms N- and π-binding affinity and suggests an augmented silver coordination in the product adduct ion Ag + ( benzylamine ) ( L ) .
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Affiliation(s)
- Davide Corinti
- Dipartimento di Chimica e Tecnologie del Farmaco, Università degli studi di Roma La Sapienza, P.le A. Moro 5, I-00185, Roma, Italy
| | - Alessandro Maccelli
- Dipartimento di Chimica e Tecnologie del Farmaco, Università degli studi di Roma La Sapienza, P.le A. Moro 5, I-00185, Roma, Italy
| | - Barbara Chiavarino
- Dipartimento di Chimica e Tecnologie del Farmaco, Università degli studi di Roma La Sapienza, P.le A. Moro 5, I-00185, Roma, Italy
| | - Markus Schütz
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623, Berlin, Germany.,present address: Eagleyard Photonics GmbH, Rudower Chaussee 29, 12489, Berlin, Germany
| | - Aude Bouchet
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623, Berlin, Germany.,present address: Université Lille LASIRE Lab Adv Spect Interact React & Environm Cite Sci, CNRS, UMR 8516, 59000, Lille, France
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623, Berlin, Germany
| | - Maria Elisa Crestoni
- Dipartimento di Chimica e Tecnologie del Farmaco, Università degli studi di Roma La Sapienza, P.le A. Moro 5, I-00185, Roma, Italy
| | - Simonetta Fornarini
- Dipartimento di Chimica e Tecnologie del Farmaco, Università degli studi di Roma La Sapienza, P.le A. Moro 5, I-00185, Roma, Italy
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4
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Uchida J, Yoshio M, Kato T. Self-healing and shape memory functions exhibited by supramolecular liquid-crystalline networks formed by combination of hydrogen bonding interactions and coordination bonding. Chem Sci 2021; 12:6091-6098. [PMID: 33996005 PMCID: PMC8098694 DOI: 10.1039/d0sc06676a] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2020] [Accepted: 03/22/2021] [Indexed: 12/15/2022] Open
Abstract
We here report a new approach to develop self-healing shape memory supramolecular liquid-crystalline (LC) networks through self-assembly of molecular building blocks via combination of hydrogen bonding and coordination bonding. We have designed and synthesized supramolecular LC polymers and networks based on the complexation of a forklike mesogenic ligand with Ag+ ions and carboxylic acids. Unidirectionally aligned fibers and free-standing films forming layered LC nanostructures have been obtained for the supramolecular LC networks. We have found that hybrid supramolecular LC networks formed through metal-ligand interactions and hydrogen bonding exhibit both self-healing properties and shape memory functions, while hydrogen-bonded LC networks only show self-healing properties. The combination of hydrogen bonds and metal-ligand interactions allows the tuning of intermolecular interactions and self-assembled structures, leading to the formation of the dynamic supramolecular LC materials. The new material design presented here has potential for the development of smart LC materials and functional LC membranes with tunable responsiveness.
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Affiliation(s)
- Junya Uchida
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo Hongo Bunkyo-ku Tokyo 113-8656 Japan
| | - Masafumi Yoshio
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo Hongo Bunkyo-ku Tokyo 113-8656 Japan
| | - Takashi Kato
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo Hongo Bunkyo-ku Tokyo 113-8656 Japan
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5
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Guo M, Huang B, Yi Q, Luo Z. Gas-phase synthesis and deposition of metal-bipyridine complex [M-bpy 1-2] + (M = Ag, Cu). Phys Chem Chem Phys 2021; 23:16334-16340. [PMID: 34313273 DOI: 10.1039/d1cp02399c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Controllable synthesis of organometallic clusters in the gas phase is a topic of reasonable interest with precisely tunable properties depending on sizes, compositions, and intra-cluster charge-transfer interactions. Here, we have prepared small Agn+ and Cun+ clusters by using a customized magnetron sputtering (MagS) source and observed the gas-phase reactions with 2,2'-bipyridine. It is found that the small silver and copper clusters readily react with bipyridine and form products of [M-bpy1-2]+ (M = Ag, Cu). Quantum chemistry calculations reveal that the bipyridine in both [Ag-bpy1-2]+ and [Cu-bpy1-2]+ takes on cis-conformation with altered N-C-C-N dihedral angles, which is in contrast to the trans-conformation of a free 2,2'-bipyridine molecule itself. In order to unveil the principle of conformational transition, we have fully studied the interactions between the nitrogen atoms of bipyridine and the cationic Ag+ and Cu+, calculated the donor-acceptor orbital overlaps, and analyzed the correlation of their frontier molecular orbital energy levels. Furthermore, by using a soft-landing strategy, we have managed to deposit the [Cu-bpy2]+ complex onto the glass substrates coated with Ag nanoparticles, and recorded the surface-enhanced Raman scattering spectra.
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Affiliation(s)
- Mengdi Guo
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China.
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6
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Nieto P, Günther A, Berden G, Oomens J, Dopfer O. IRMPD Spectroscopy of Metalated Flavins: Structure and Bonding of Lumiflavin Complexes with Alkali and Coinage Metal Ions. J Phys Chem A 2016; 120:8297-8308. [PMID: 27690438 DOI: 10.1021/acs.jpca.6b08281] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Flavins are a fundamental class of biomolecules, whose photochemical properties strongly depend on their environment and their redox and metalation state. Infrared multiphoton dissociation (IRMPD) spectra of mass-selected isolated metal-lumiflavin ionic complexes (M+LF) are analyzed in the fingerprint range (800-1830 cm-1) to determine the bonding of lumiflavin with alkali (M = Li, Na, K, Cs) and coinage (M = Cu, Ag) metal ions. The complexes are generated in an electrospray ionization source coupled to an ion cyclotron resonance mass spectrometer and the IR free electron laser FELIX. Vibrational and isomer assignments of the IRMPD spectra are accomplished by comparison to quantum chemical calculations at the B3LYP/cc-pVDZ level, yielding structure, binding energy, bonding mechanism, and spectral properties of the complexes. The most stable binding sites identified in the experiments involve metal bonding to the oxygen atoms of the two available CO groups of LF. Hence, CO stretching frequencies are a sensitive indicator of both the metal binding site and the metal bond strength. More than one isomer is observed for M = Li, Na, and K, and the preferred CO binding site changes with the size of the alkali ion. For Cs+LF, only one isomer is identified, although the energies of the two most stable structures differ by less than 7 kJ/mol. While the M+-LF bonds for alkali ions are mainly based on electrostatic forces, substantial covalent contributions lead to stronger bonds for the coinage metal ions. Comparison between lumiflavin and lumichrome reveals substantial differences in the metal binding motifs and interactions due to the different flavin structures.
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Affiliation(s)
- Pablo Nieto
- Institut für Optik und Atomare Physik, Technische Universität Berlin , Hardenbergstrasse 36, D-10623 Berlin, Germany
| | - Alan Günther
- Institut für Optik und Atomare Physik, Technische Universität Berlin , Hardenbergstrasse 36, D-10623 Berlin, Germany
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands.,van't Hoff Institute for Molecular Sciences, University of Amsterdam , Science Park 904, 1098XH Amsterdam, The Netherlands
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin , Hardenbergstrasse 36, D-10623 Berlin, Germany
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7
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Gao J, Bouwman J, Berden G, Oomens J. The Influence of Metal Ion Binding on the IR Spectra of Nitrogen-Containing PAHs. J Phys Chem A 2016; 120:7800-7809. [DOI: 10.1021/acs.jpca.6b05060] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Juehan Gao
- Radboud
University, FELIX Laboratory, Institute for Molecules and Materials, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
| | - Jordy Bouwman
- Radboud
University, FELIX Laboratory, Institute for Molecules and Materials, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
| | - Giel Berden
- Radboud
University, FELIX Laboratory, Institute for Molecules and Materials, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud
University, FELIX Laboratory, Institute for Molecules and Materials, Toernooiveld 7c, 6525ED Nijmegen, The Netherlands
- Van’t
Hoff Institute for Molecular Sciences, University of Amsterdam, Science
Park 904, 1098XH Amsterdam, The Netherlands
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8
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Gaffga M, Munstein I, Müller P, Lang J, Thiel WR, Niedner-Schatteburg G. Multistate-Mediated Rearrangements and FeCl2 Elimination in Dinuclear FePd Complexes. J Phys Chem A 2015; 119:12587-98. [PMID: 26595679 DOI: 10.1021/acs.jpca.5b06952] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Mass spectrometric, spectroscopic, and computational characterization of a novel bifunctional iron-palladium complex proves a change of coordination upon solvation. Collisional excitation reveals FeCl2 and HCl elimination in a solvent-modulated competition. Hereby, syn and anti isomers, identified by theoretical calculations, favor and disfavor FeCl2 elimination, respectively. The FeCl2 elimination likely proceeds by chlorido and Cp ligand exchange among the metallic centers in a concerted, ballet-like manner. A multitude of stationary points were identified along the computed multistep reaction coordinates of the three conceivable spin states. The quintet state shows a static Jahn-Teller type relaxation by a tilt away of the Cp ligand at the iron center. The direct singlet-quintet spin crossover is an unprecedented assumption, leaving behind the triplet state as a spectator without involvement. The FeCl2 elimination would decrease catalytic activity. It is kinetically hindered within a range of applicable temperatures in conceivable technical applications.
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Affiliation(s)
- Maximilian Gaffga
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
| | - Isabel Munstein
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
| | - Patrick Müller
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
| | - Johannes Lang
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
| | - Werner R Thiel
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
| | - Gereon Niedner-Schatteburg
- Fachbereich Chemie und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany
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9
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Godtliebsen IH, Christiansen O. Calculating vibrational spectra without determining excited eigenstates: Solving the complex linear equations of damped response theory for vibrational configuration interaction and vibrational coupled cluster states. J Chem Phys 2015; 143:134108. [DOI: 10.1063/1.4932010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
| | - Ove Christiansen
- Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
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10
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Berdakin M, Steinmetz V, Maitre P, Pino GA. On the Ag+–cytosine interaction: the effect of microhydration probed by IR optical spectroscopy and density functional theory. Phys Chem Chem Phys 2015; 17:25915-24. [DOI: 10.1039/c5cp02221e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Single water molecule hydration stabilizes two quasi-isoenergetic complexes of cytosine⋯Ag+.
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Affiliation(s)
- Matias Berdakin
- INFIQC (CONICET – Universidad Nacional de Córdoba)
- Dpto. de Fisicoquímica
- Facultad de Ciencias Químicas
- Centro Láser de Ciencias Moleculares
- Universidad Nacional de Córdoba
| | - Vincent Steinmetz
- Laboratoire de Chimie Physique
- Université Paris Sud
- UMR8000 CNRS
- Faculté des Sciences
- 91405 Orsay Cedex
| | - Philippe Maitre
- Laboratoire de Chimie Physique
- Université Paris Sud
- UMR8000 CNRS
- Faculté des Sciences
- 91405 Orsay Cedex
| | - Gustavo A. Pino
- INFIQC (CONICET – Universidad Nacional de Córdoba)
- Dpto. de Fisicoquímica
- Facultad de Ciencias Químicas
- Centro Láser de Ciencias Moleculares
- Universidad Nacional de Córdoba
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11
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van Stipdonk MJ, Basu P, Dille SA, Gibson JK, Berden G, Oomens J. Infrared multiple photon dissociation spectroscopy of a gas-phase oxo-molybdenum complex with 1,2-dithiolene ligands. J Phys Chem A 2014; 118:5407-18. [PMID: 24988369 PMCID: PMC4338922 DOI: 10.1021/jp503222v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
![]()
Electrospray
ionization (ESI) in the negative ion mode was used
to create anionic, gas-phase oxo-molybdenum complexes with dithiolene
ligands. By varying ESI and ion transfer conditions, both doubly and
singly charged forms of the complex, with identical formulas, could
be observed. Collision-induced dissociation (CID) of the dianion generated
exclusively the monoanion, while fragmentation of the monoanion involved
decomposition of the dithiolene ligands. The intrinsic structure of
the monoanion and the dianion were determined by using wavelength-selective
infrared multiple-photon dissociation (IRMPD) spectroscopy and density
functional theory calculations. The IRMPD spectrum for the dianion
exhibits absorptions that can be assigned to (ligand) C=C,
C–S, C—C≡N, and Mo=O stretches. Comparison
of the IRMPD spectrum to spectra predicted for various possible conformations
allows assignment of a pseudo square pyramidal structure with C2v symmetry, equatorial coordination
of MoO2+ by the S atoms of the dithiolene ligands, and
a singlet spin state. A single absorption was observed for the oxidized
complex. When the same scaling factor employed for the dianion is
used for the oxidized version, theoretical spectra suggest that the
absorption is the Mo=O stretch for a distorted square pyramidal
structure and doublet spin state. A predicted change in conformation
upon oxidation of the dianion is consistent with a proposed bonding
scheme for the bent-metallocene dithiolene compounds [Lauher, J. W.; Hoffmann, R. J. Am.
Chem. Soc.1976, 98, 1729−1742], where a large
folding of the dithiolene moiety along the S···S vector
is dependent on the occupancy of the in-plane metal d-orbital.
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Affiliation(s)
- Michael J van Stipdonk
- Department of Chemistry and Biochemistry, Duquesne University , 600 Forbes Avenue, Pittsburgh, Pennsylvania 15282, United States
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12
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Berdakin M, Steinmetz V, Maitre P, Pino GA. Gas Phase Structure of Metal Mediated (Cytosine)2Ag+ Mimics the Hemiprotonated (Cytosine)2H+ Dimer in i-Motif Folding. J Phys Chem A 2014; 118:3804-3809. [DOI: 10.1021/jp5038969] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Matias Berdakin
- INFIQC (CONICET
− Universidad Nacional de Córdoba), Departamento de
Fisicoquímica, Facultad de Ciencias Químicas, Centro
Láser de Ciencias Moleculares, Universidad Nacional de Córdoba, Ciudad Universitaria, X5000HUA Córdoba, Córdoba, Argentina
| | - Vincent Steinmetz
- Laboratoire de Chimie Physique, Université Paris Sud, UMR8000 CNRS, Faculté des Sciences, 91405 Orsay Cedex, France
| | - Philippe Maitre
- Laboratoire de Chimie Physique, Université Paris Sud, UMR8000 CNRS, Faculté des Sciences, 91405 Orsay Cedex, France
| | - Gustavo A. Pino
- INFIQC (CONICET
− Universidad Nacional de Córdoba), Departamento de
Fisicoquímica, Facultad de Ciencias Químicas, Centro
Láser de Ciencias Moleculares, Universidad Nacional de Córdoba, Ciudad Universitaria, X5000HUA Córdoba, Córdoba, Argentina
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13
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Günther A, Nieto P, Berden G, Oomens J, Dopfer O. IRMPD spectroscopy of metalated flavins: structure and bonding of Mq+–lumichrome complexes (Mq+ = Li+–Cs+, Ag+, Mg2+). Phys Chem Chem Phys 2014; 16:14161-71. [DOI: 10.1039/c4cp01524j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The strength, structure, and type of bonding of cationic metal–flavin interactions are characterized by IR spectroscopy and quantum chemical calculations of Mq+ ions complexed to lumichrome.
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Affiliation(s)
- Alan Günther
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- D-10623 Berlin, Germany
| | - Pablo Nieto
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- D-10623 Berlin, Germany
| | - Giel Berden
- Institute for Molecules and Materials
- FELIX facility
- Radboud University Nijmegen
- 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials
- FELIX facility
- Radboud University Nijmegen
- 6525 ED Nijmegen, The Netherlands
- van't Hoff Institute for Molecular Sciences
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- D-10623 Berlin, Germany
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14
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Nosenko Y, Menges F, Riehn C, Niedner-Schatteburg G. Investigation by two-color IR dissociation spectroscopy of Hoogsteen-type binding in a metalated nucleobase pair mimic. Phys Chem Chem Phys 2013; 15:8171-8. [PMID: 23612714 DOI: 10.1039/c3cp44283g] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Two Ag(I) ions, deprotonated 1-methyl-thymine (1MT-H)(-) and 1,3-dideaza-adenine (DDA), self-assemble in methanolic solution to a cationic [(Ag)2(1MT-H)(DDA)](+) complex as identified by electrospray ionization mass spectrometry. Assignment of vibrational bands and identification of the silver coordination pattern arise from comparison of one- and two-color Infrared Multiple Photon Dissociation (IRMPD) spectra (1000-4000 cm(-1)) of isolated and trapped complexes to calculated spectra from density functional theory. This approach reveals two structurally and energetically close isomers that resemble a metalated Hoogsteen-like binding motif. The two color IR/IR double resonance scheme proved in particular useful to observe weakly absorbing or weakly fragmenting vibrational modes.
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Affiliation(s)
- Yevgeniy Nosenko
- Fachbereich Chemie and Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern, Erwin-Schrödinger-Str. 52, Kaiserslautern 67663, Germany.
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15
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Chiavarino B, Crestoni ME, Fornarini S, Taioli S, Mancini I, Tosi P. Infrared spectroscopy of copper-resveratrol complexes: A joint experimental and theoretical study. J Chem Phys 2012; 137:024307. [DOI: 10.1063/1.4732583] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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16
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Röhr MIS, Petersen J, Brunet C, Antoine R, Broyer M, Dugourd P, Bonačić-Koutecký V, O'Hair RAJ, Mitrić R. Synthesis and Spectroscopic Characterization of Diphenylargentate, [(C6H5)2Ag](.). J Phys Chem Lett 2012; 3:1197-1201. [PMID: 26288055 DOI: 10.1021/jz300280f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We present the structural and optical properties of the isolated diphenylargentate anion, which has been synthesized by multistage mass spectrometry in a quadrupole ion trap. The experimental photodetachment spectrum has been obtained by action spectroscopy. Comparison with quantum chemical calculations of the electronic absorption spectrum allows for a precise characterization of the spectroscopic features, showing that in the low-energy regime, the optical properties of diphenylargentate bear a significant resemblance to those of atomic silver.
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Affiliation(s)
- M I S Röhr
- †Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Strasse 2, D-12489 Berlin, Germany
| | - J Petersen
- ‡Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
| | - C Brunet
- §Université Lyon 1, CNRS, 43 Bd du 11 Novembre 1918, F-69622 Villeurbanne cedex, France
| | - R Antoine
- §Université Lyon 1, CNRS, 43 Bd du 11 Novembre 1918, F-69622 Villeurbanne cedex, France
| | - M Broyer
- §Université Lyon 1, CNRS, 43 Bd du 11 Novembre 1918, F-69622 Villeurbanne cedex, France
| | - P Dugourd
- §Université Lyon 1, CNRS, 43 Bd du 11 Novembre 1918, F-69622 Villeurbanne cedex, France
| | - V Bonačić-Koutecký
- †Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Strasse 2, D-12489 Berlin, Germany
- ⊥Interdisciplinary Center for Advanced Science and Technology, University of Split, Meštrovićevo Šetalište 45, HR-21000 Split, Croatia
| | - R A J O'Hair
- #School of Chemistry, Bio21 Institute of Molecular Science and Biotechnology, ARC Centre of Excellence in Free Radical Chemistry and Biotechnology, The University of Melbourne, Melbourne, Victoria, 3010, Australia
| | - R Mitrić
- ‡Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
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Lagutschenkov A, Langer J, Berden G, Oomens J, Dopfer O. Infrared spectra of the protonated neurotransmitter histamine: competition between imidazolium and ammonium isomers in the gas phase. Phys Chem Chem Phys 2011; 13:15644-56. [DOI: 10.1039/c1cp21681c] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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