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Sikdar N, Laha S, Jena R, Dey A, Rahimi FA, Maji TK. An adsorbate biased dynamic 3D porous framework for inverse CO 2 sieving over C 2H 2. Chem Sci 2024; 15:7698-7706. [PMID: 38784756 PMCID: PMC11110155 DOI: 10.1039/d3sc06611h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 04/07/2024] [Indexed: 05/25/2024] Open
Abstract
Separating carbon dioxide (CO2) from acetylene (C2H2) is one of the most critical and complex industrial separations due to similarities in physicochemical properties and molecular dimensions. Herein, we report a novel Ni-based three-dimensional framework {[Ni4(μ3-OH)2(μ2-OH2)2(1,4-ndc)3](3H2O)}n (1,4-ndc = 1,4-naphthalenedicarboxylate) with a one-dimensional pore channel (3.05 × 3.57 Å2), that perfectly matches with the molecular size of CO2 and C2H2. The dehydrated framework shows structural transformation, decorated with an unsaturated Ni(ii) centre and pendant oxygen atoms. The dynamic nature of the framework is evident by displaying a multistep gate opening type CO2 adsorption at 195, 273, and 298 K, but not for C2H2. The real time breakthrough gas separation experiments reveal a rarely attempted inverse CO2 selectivity over C2H2, attributed to open metal sites with a perfect pore aperture. This is supported by crystallographic analysis, in situ spectroscopic inspection, and selectivity approximations. In situ DRIFTS measurements and DFT-based theoretical calculations confirm CO2 binding sites are coordinatively unsaturated Ni(ii) and carboxylate oxygen atoms, and highlight the influence of multiple adsorption sites.
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Affiliation(s)
- Nivedita Sikdar
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
| | - Subhajit Laha
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
| | - Rohan Jena
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
| | - Anupam Dey
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
| | - Faruk Ahamed Rahimi
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
| | - Tapas Kumar Maji
- Molecular Materials Laboratory, Chemistry and Physics of Materials Unit, School of Advanced Materials (SAMat), International Centre for Materials Science (ICMS), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) Jakkur Bangalore 560064 India +91-80-2208-2766 +91-80-2208-2826
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2
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Liu L, Jiang K, Chen Q, Liu L. On the Diffusion of Ionic Liquids in ILs@ZIF-8 Composite Materials: A Density Functional Theory Study. Molecules 2024; 29:1697. [PMID: 38675516 PMCID: PMC11052405 DOI: 10.3390/molecules29081697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 04/01/2024] [Accepted: 04/03/2024] [Indexed: 04/28/2024] Open
Abstract
Recently, composite materials consisting of ionic liquids (ILs) and metal-organic frameworks (MOFs) have attracted a great deal of attention due to their fantastic properties. Many theoretical studies have been performed on their special structures and gas separation applications. Yet, the mechanism for the diffusion of ILs inside MOF channels still remains unclear. Here, the DFT calculations (e.g., rigid and relaxed potential energy surface, PES, scan) together with frontier orbital analysis, natural charge analysis, and energy decomposition analysis were performed to investigate the diffusion behavior of a typical IL, [C4mim][PF6], into the ZIF-8 SOD cage. The PES profiles indicate that it is quite difficult for the cation [C4min]+ to diffuse into the cage of ZIF-8 through the pristine pores because of the large imidazole steric hindrance, which results in a large energy barrier of ca. 40 kcal·mol-1 at the least. Interestingly, the PES reveals that a successful diffusion could be obtained by thermal contributions, which enlarge the pore size through swing effects at higher temperatures. For example, both [C4mim]+ and [PF6]- could easily diffuse through the channel of the ZIF-8 SOD cage when the pore size was increased to 6.9 Å. Subsequently, electronic structure analyses reveal that the main interactions between [PF6]- or [C4mim]+ and ZIF-8 are the steric repulsion interactions. Finally, the effects of the amounts of [C4mim][PF6] on the ZIF-8 structures were investigated, and the results show that two pairs of [C4mim][PF6] per SOD cage are the most stable in terms of the interaction between energies and structural changes. With these findings, we propose that the high-temperature technique could be employed during the synthesis of IL@MOF membranes, to enrich their family members and their industrial applications.
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Affiliation(s)
- Longlong Liu
- Center for Computational Chemistry, College of Chemistry and Chemical Engineering, Wuhan Textile University, Wuhan 430200, China; (L.L.)
| | - Kun Jiang
- Center for Computational Chemistry, College of Chemistry and Chemical Engineering, Wuhan Textile University, Wuhan 430200, China; (L.L.)
| | - Qingjun Chen
- Key Laboratory of Rare Earths, Ganjiang Innovation Academy, Chinese Academy of Sciences, Ganzhou 341000, China
| | - Lei Liu
- Center for Computational Chemistry, College of Chemistry and Chemical Engineering, Wuhan Textile University, Wuhan 430200, China; (L.L.)
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3
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Kalintsev A, Guan Q, Brugger J, Migdisov A, Etschmann B, Ram R, Liu W, Mei Y, Testemale D, Xu H. Nature and coordination geometry of geologically relevant aqueous Uranium(VI) complexes up to 400 ºC: A review and new data. JOURNAL OF HAZARDOUS MATERIALS 2023; 452:131309. [PMID: 37018892 DOI: 10.1016/j.jhazmat.2023.131309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 03/23/2023] [Accepted: 03/26/2023] [Indexed: 06/19/2023]
Abstract
The structure of the uranyl aqua ion (UO22+) and a number of its inorganic complexes (specifically, UO2Cl+, UO2Cl20, UO2SO40, [Formula: see text] , [Formula: see text] and UO2OH42-) have been characterised using X-Ray absorption spectroscopy/extended X-Ray absorption fine structure (XAS/EXAFS) at temperatures ranging from 25 to 326 ºC. Results of ab initio molecular dynamics (MD) calculations are also reported for uranyl in chloride and sulfate-bearing fluids from 25 to 400 ºC and 600 bar to 20 kilobar (kb). These results are reported alongside a comprehensive review of prior structural characterisation work with particular focus given to EXAFS works to provide a consistent and up-to-date view of the structure of these complexes under conditions relevant to U mobility in ore-forming systems and around high-grade nuclear waste repositories. Regarding reported EXAFS results, average equatorial coordination was found to decrease in uranyl and its sulfate and chloride complexes as temperature rose - the extent of this decrease differed between species and solution compositions but typically resulted in an equatorial coordination number of ∼3-4 at temperatures above 200 ºC. The [Formula: see text] complex was observed at temperatures from 25 to 247 ºC and exhibited no major structural changes over this temperature range. UO2OH42- exhibited only minor structural changes over a temperature range from 88 to 326 ºC and was suggested to manifest fivefold coordination with four hydroxyl molecules and one water molecule around its equator. Average coordination values derived from fits of the reported EXAFS data were compared to average coordination values calculated using the experimentally derived thermodynamic data for chloride complexes reported by Dargent et al. (2013) and Migdisov et al. (2018b), and for sulfate complexes reported by Alcorn et al. (2019) and Kalintsev et al. (2019). Sulfate EXAFS data were well described by available thermodynamic data, and chloride EXAFS data were described well by the thermodynamic data of Migdisov et al. (2018b), but not by the data of Dargent et al. (2013). The ab initio molecular dynamics calculations confirmed the trends in equatorial coordination observed with EXAFS and were also able to provide an insight into the effect of pressure in equatorial water coordination - for a given temperature, higher pressures appear to lead to a greater number of equatorially bound waters counteracting the temperature effect.
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Affiliation(s)
- Alexander Kalintsev
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia; Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA.
| | - Qiushi Guan
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Joël Brugger
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Artas Migdisov
- Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA
| | - Barbara Etschmann
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Rahul Ram
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Weihua Liu
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Yuan Mei
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Denis Testemale
- CNRS, Université Grenoble Alpes, Institut NEEL, Grenoble F-38000, France
| | - Hongwu Xu
- Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA
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4
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Pardoux R, Sauge-Merle S, Bremond N, Beccia MR, Lemaire D, Battesti C, Delangle P, Solari PL, Guilbaud P, Berthomieu C. Optimized Coordination of Uranyl in Engineered Calmodulin Site 1 Provides a Subnanomolar Affinity for Uranyl and a Strong Uranyl versus Calcium Selectivity. Inorg Chem 2022; 61:20480-20492. [DOI: 10.1021/acs.inorgchem.2c03185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Romain Pardoux
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Sandrine Sauge-Merle
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Nicolas Bremond
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Maria Rosa Beccia
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - David Lemaire
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Christine Battesti
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Pascale Delangle
- Univ. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000Grenoble, France
| | - Pier Lorenzo Solari
- MARS beamline, Synchrotron SOLEIL, L’Orme des Merisiers, Saint-Aubin, 91192Gif-sur-Yvette Cedex, France
| | | | - Catherine Berthomieu
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
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5
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Poulin-Ponnelle C, Duvail M, Dumas T, Berthon C. Contribution of Molecular Dynamics in pNMR for the Structural Determination of An V and An VI Complexes in Solution. Inorg Chem 2022; 61:15895-15909. [PMID: 36166623 DOI: 10.1021/acs.inorgchem.2c02040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this study, we propose to use classical molecular dynamics (MD) coupled with 1H NMR spectroscopy to study the conformations of different actinyl AnVI (An = U, Np, and Pu) and AnV (An = Np) complexes with tetra-ethyl dyglicolamide (TEDGA) ligands in order to have a better representation of such complexes in solution. Molecular dynamics simulations showed its effectiveness in interpreting the experiments by the calculation of geometric factors needed for the determination of magnetic properties of these complexes. We demonstrated that different conformations of the AnV and AnVI complexes with TEDGA exist in solution with different coordination modes, which is experimentally confirmed by 1H NMR and EXAFS spectroscopies. Furthermore, MD simulations provide additional insights into the structures of complexes in solution since conformations with fast exchanges, which are not accessible from NMR experiments, have been observed by MD simulations.
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Affiliation(s)
| | - Magali Duvail
- ICSM, Univ. Montpellier, CEA, CNRS, ENSCM, Bagnols sur Cèze 30207, France
| | - Thomas Dumas
- LILA, Univ. Montpellier, CEA, Bagnols sur Cèze 30207, France
| | - Claude Berthon
- LILA, Univ. Montpellier, CEA, Bagnols sur Cèze 30207, France
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6
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Lontchi EM, Vasiliu M, Tatina LM, Caccamo AC, Gomez AN, Gibson JK, Dixon DA. Hydrolysis of Small Oxo/Hydroxo Molecules Containing High Oxidation State Actinides (Th, Pa, U, Np, Pu): A Computational Study. J Phys Chem A 2021; 125:6158-6170. [PMID: 34240864 DOI: 10.1021/acs.jpca.1c04048] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The energetics of hydrolysis reactions for high oxidation states of oxo/hydroxo monomeric actinide species (ThIVO2, PaIVO2, UIVO2, PaVO2(OH), UVO2(OH), UVIO3, NpVIO3, NpVIIO3(OH), and PuVIIO3(OH)) were calculated at the CCSD(T) level. The first step is the formation of a Lewis acid/base adduct with H2O (hydration), followed by a proton transfer to form a dihydroxide molecule (hydrolysis); this process is repeated until all oxo groups are hydrolyzed. The physisorption (hydration) for each H2O addition was predicted to be exothermic, ca. -20 kcal/mol. The hydrolysis products are preferred energetically over the hydration products for the +IV and +V oxidation states. The compounds with AnVI are a turning point in terms of favoring hydration over hydrolysis. For AnVIIO3(OH), hydration products are preferred, and only two waters can bind; the complete hydrolysis process is now endothermic, and the oxidation state for the An in An(OH)7 is +VI with two OH groups each having one-half an electron. The natural bond order charges and the reaction energies provide insights into the nature of the hydrolysis/hydration processes. The actinide charges and bond ionicity generally decrease across the period. The ionic character decreases as the oxidation state and coordination number increase so that covalency increases moving to the right in the actinide period.
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Affiliation(s)
- Eddy M Lontchi
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - Monica Vasiliu
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - Lauren M Tatina
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - Alyssa C Caccamo
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - Amber N Gomez
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - John K Gibson
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - David A Dixon
- Department of Chemistry and Biochemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
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7
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Servis MJ, Martinez-Baez E, Clark AE. Hierarchical phenomena in multicomponent liquids: simulation methods, analysis, chemistry. Phys Chem Chem Phys 2020; 22:9850-9874. [PMID: 32154813 DOI: 10.1039/d0cp00164c] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Complex, multicomponent, solutions have often been studied solely through the lens of specific applications of interest. Yet advances to both simulation methodologies (enhanced sampling, etc.) and analysis techniques (network analysis algorithms and others), are creating a trove of data that reveal transcending characteristics across vast compositional phase space. This perspective discusses technical considerations of the reliable and accurate simulations of complex solutions, followed by the advances to analysis algorithms that elucidate coupling of different length and timescale behavior (hierarchical phenomena). The different manifestations of hierarchical phenomena are presented across an array of solution environments, emphasizing fundamental and ongoing science questions. With a more advanced molecular understanding in hand, a quintessential application (solvent extraction) is discussed, where significant opportunities exist to re-imagine the technical scope of an established technology.
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Affiliation(s)
- Michael J Servis
- Department of Chemistry, Washington State University, Pullman, WA 99164, USA.
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8
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Feng R, Glendening ED, Peterson KA. Coupled Cluster Study of the Interactions of AnO 2, AnO 2+, and AnO 22+ (An = U, Np) with N 2 and CO. Inorg Chem 2020; 59:4753-4763. [DOI: 10.1021/acs.inorgchem.9b03759] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rulin Feng
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
| | - Eric D. Glendening
- Department of Chemistry and Physics, Indiana State University, Terre Haute, Indiana 47809, United States
| | - Kirk A. Peterson
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
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9
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Das A, Ali SM. Molecular Dynamics Simulation Studies on Structure, Dynamics, and Thermodynamics of Uranyl Nitrate Solution at Various Acid Concentrations. J Phys Chem B 2019; 123:4571-4586. [PMID: 31070371 DOI: 10.1021/acs.jpcb.9b01498] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The structural and dynamical characteristics of uranyl ions in an aqueous acidic environment are of immense importance in the field of nuclear fuel reprocessing. In view of that, the structural and dynamical behavior of the uranyl ion in water has been investigated by performing molecular dynamics (MD) simulations using different force fields. All the force fields have depicted similar structural and dynamical properties except the free energy of hydration where the Guilbaud-Wipff (GW) model performs well over the others. The calculated density using MD simulations is found to be in excellent agreement with the measured experimental density, which ensures the accuracy of the adopted GW force field. The calculated surface tension and shear viscosity are seen to be increased with uranyl nitrate concentrations. At a higher concentration of about 4.0 mol/L, the supersaturation effect has been captured by an inflection in the plot of surface tension and shear viscosity against concentration because of the solution heterogeneity, which was correlated by an inflection in the scattering intensity observed by performing the dynamic light scattering experiment. The binding mode of nitrate ions with the uranyl ion is found to be concentration-dependent, and at higher concentration, it is predominantly monodentate.
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Affiliation(s)
- Arya Das
- Nuclear Recycle Board , Bhabha Atomic Research Centre , Mumbai 400094 , India.,Homi Bhabha National Institute , Mumbai 400094 , India
| | - Sk Musharaf Ali
- Chemical Engineering Division , Bhabha Atomic Research Centre , Mumbai 400085 , India.,Homi Bhabha National Institute , Mumbai 400094 , India
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10
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Vasiliu M, Gibson JK, Peterson KA, Dixon DA. Gas Phase Hydrolysis and Oxo‐Exchange of Actinide Dioxide Cations: Elucidating Intrinsic Chemistry from Protactinium to Einsteinium. Chemistry 2019; 25:4245-4254. [DOI: 10.1002/chem.201803932] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Monica Vasiliu
- Department of Chemistry The University of Alabama, Shelby Hall Tuscaloosa Alabama 35487-0336 USA
| | - John K. Gibson
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA
| | - Kirk A. Peterson
- Department of Chemistry Washington State University Pullman WA 99164-4630 USA
| | - David A. Dixon
- Department of Chemistry The University of Alabama, Shelby Hall Tuscaloosa Alabama 35487-0336 USA
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11
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Duvail M, Dumas T, Paquet A, Coste A, Berthon L, Guilbaud P. UO22+ structure in solvent extraction phases resolved at molecular and supramolecular scales: a combined molecular dynamics, EXAFS and SWAXS approach. Phys Chem Chem Phys 2019; 21:7894-7906. [DOI: 10.1039/c8cp07230b] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We developed a polarizable force field for unraveling the UO22+ structure in both aqueous and solvent extraction phases.
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12
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Ding W, Liu Y, Wang D. Computational Comparative Mechanistic Study of C−E (E=C,N,O,S) Coupling Reactions through CO2Activation Mediated by Uranium(III) Complexes. Chemistry 2018; 24:19289-19299. [DOI: 10.1002/chem.201804072] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Wanjian Ding
- MOE Key Laboratory of Theoretical and Computational Photochemistry, and College of ChemistryBeijing Normal University Beijing 100875 P.R. China
| | - Yanxiao Liu
- MOE Key Laboratory of Theoretical and Computational Photochemistry, and College of ChemistryBeijing Normal University Beijing 100875 P.R. China
| | - Dongqi Wang
- Division of Multidisciplinary ResearchInstitute of High Energy PhysicsChinese Academy of Sciences Beijing 100049 P.R. China
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13
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Ab initio study of ligand dissociation/exchange and the hydrogen production process of the Co(dmgH)2(py)Cl cobaloxime in the acetonitrile-water solvent. Catal Today 2018. [DOI: 10.1016/j.cattod.2018.03.058] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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14
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Speciation of uranium(VI) extracted from acidic nitrate media by TODGA into molecular and ionic solvents. Sep Purif Technol 2018. [DOI: 10.1016/j.seppur.2018.04.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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15
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He M, Liu X, Cheng J, Lu X, Zhang C, Wang R. Uranyl Arsenate Complexes in Aqueous Solution: Insights from First-Principles Molecular Dynamics Simulations. Inorg Chem 2018; 57:5801-5809. [PMID: 29741893 DOI: 10.1021/acs.inorgchem.8b00136] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this study, the structures and acidity constants (p Ka's) of uranyl arsenate complexes in solutions have been revealed by using the first principle molecular dynamics technique. The results show that uranyl and arsenate form stable complexes with the U/As ratios of 1:1 and 1:2, and the bidentate complexation between U and As is highly favored. Speciation-pH distributions are derived based on free energy and p Ka calculations, which indicate that for the 1:1 species, UO2(H2AsO4)(H2O)3+ is the major species at pH < 7, while UO2(HAsO4)(H2O)30 and UO2(AsO4)(H2O)3- dominate in acid-to-alkaline and extreme alkaline pH ranges. For the 1:2 species, UO2(H2AsO4)2(H2O)0 is dominant under acid-to-neutral pH conditions, while UO2(HAsO4)(H2AsO4)(H2O)-, UO2(HAsO4)(HAsO4)(H2O)2-, and UO2(AsO4)(HAsO4)(H2O)3- become the major forms in the pH range of 7.2-10.7, 10.7-12.1, and >12.1, respectively.
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Affiliation(s)
- Mengjia He
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Xiandong Liu
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Jun Cheng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering , Xiamen University , Xiamen 361005 , China.,Department of Chemistry , University of Aberdeen , Aberdeen AB24 3UE , United Kingdom
| | - Xiancai Lu
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Chi Zhang
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Rucheng Wang
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
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16
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Newcomb K, Tiwari SP, Rai N, Maginn EJ. A molecular dynamics investigation of actinyl–ligand speciation in aqueous solution. Phys Chem Chem Phys 2018; 20:15753-15763. [DOI: 10.1039/c8cp01944d] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Actinyl ions (AnO2n+), the form in which actinides are commonly found in aqueous solution, are important species in the nuclear fuel cycle.
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Affiliation(s)
- Ken Newcomb
- Department of Chemical and Biomolecular Engineering
- University of Notre Dame
- Notre Dame
- USA
| | - Surya Prakash Tiwari
- Department of Chemical and Biomolecular Engineering
- University of Notre Dame
- Notre Dame
- USA
| | - Neeraj Rai
- Dave C. Swalm School of Chemical Engineering
- Mississippi State University
- Mississippi State
- USA
| | - Edward J. Maginn
- Department of Chemical and Biomolecular Engineering
- University of Notre Dame
- Notre Dame
- USA
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17
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Sauge-Merle S, Brulfert F, Pardoux R, Solari PL, Lemaire D, Safi S, Guilbaud P, Simoni E, Merroun ML, Berthomieu C. Structural Analysis of Uranyl Complexation by the EF-Hand Motif of Calmodulin: Effect of Phosphorylation. Chemistry 2017; 23:15505-15517. [DOI: 10.1002/chem.201703484] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Indexed: 01/03/2023]
Affiliation(s)
- Sandrine Sauge-Merle
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Florian Brulfert
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Romain Pardoux
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Pier Lorenzo Solari
- MARS beamline; Synchrotron SOLEIL; L'Orme des Merisiers, Saint-Aubin; 91192 Gif-sur-Yvette Cedex France
| | - David Lemaire
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Samir Safi
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Philippe Guilbaud
- CEA, Nuclear Energy Division; Research Department on Mining and fuel Recycling Processes (LILA); BP17171 30207 Bagnols-sur-Cèze France
| | - Eric Simoni
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | | | - Catherine Berthomieu
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
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18
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Priest C, Li B, Jiang DE. Uranyl–Glutardiamidoxime Binding from First-Principles Molecular Dynamics, Classical Molecular Dynamics, and Free-Energy Simulations. Inorg Chem 2017; 56:9497-9504. [DOI: 10.1021/acs.inorgchem.7b00711] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Chad Priest
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Bo Li
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - De-en Jiang
- Department of Chemistry, University of California, Riverside, California 92521, United States
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19
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Marchenko A, Truflandier LA, Autschbach J. Uranyl Carbonate Complexes in Aqueous Solution and Their Ligand NMR Chemical Shifts and 17O Quadrupolar Relaxation Studied by ab Initio Molecular Dynamics. Inorg Chem 2017; 56:7384-7396. [PMID: 28598146 DOI: 10.1021/acs.inorgchem.7b00396] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Dynamic structural effects, NMR ligand chemical shifts, and 17O NMR quadrupolar relaxation rates are investigated in the series of complexes UO22+, UO2(CO3)34-, and (UO2)3(CO3)66-. Car-Parrinello molecular dynamics (CPMD) is used to simulate the dynamics of the complexes in water. NMR properties are computed on clusters extracted from the CPMD trajectories. In the UO22+ complex, coordination at the uranium center by water molecules causes a decrease of around 300 ppm for the uranyl 17O chemical shift. The final value of this chemical shift is within 40 ppm of the experimental range. The UO2(CO3)34- and (UO2)3(CO3)66- complexes show a solvent dependence of the terminal carbonate 17O and 13C chemical shifts that is less pronounced than that for the uranyl oxygen atom. Corrections to the chemical shift from hybrid functionals and spin-orbit coupling improve the accuracy of chemical shifts if the sensitivity of the uranyl chemical shift to the uranyl bond length (estimated at 140 ppm per 0.1 Å from trajectory data) is taken into consideration. The experimentally reported trend in the two unique 13C chemical shifts is correctly reproduced for (UO2)3(CO3)66-. NMR relaxation rate data support large 17O peak widths, but remain below those noted in the experimental literature. Comparison of relaxation data for solvent-including versus solvent-free models suggest that carbonate ligand motion overshadows explicit solvent effects.
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Affiliation(s)
- Alex Marchenko
- Department of Chemistry, University at Buffalo, State University of New York , Buffalo, New York 14260-3000, United States
| | - Lionel A Truflandier
- Institut des Sciences Moleculaires, Universite Bordeaux , CNRS UMR 5255, 33405 Talence cedex, France
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York , Buffalo, New York 14260-3000, United States
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20
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Valkonen A, Lombardo GM, Rissanen K, Punzo F, Cametti M. X-Ray crystallographic and computational study on uranyl-salophen complexes bearing nitro groups. Dalton Trans 2017; 46:5240-5249. [PMID: 28374879 DOI: 10.1039/c6dt04773d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
In the solid state, salophen-UO2 complexes bearing one, two, or three NO2 groups lack the pronounced ligand curvature that represents a structural hallmark for this class of compounds. A detailed structural study based on single-crystal X-ray crystallography and computational methods, comprising molecular dynamics, gas-phase Hartree Fock, and DFT calculations, was carried out to investigate the coordination properties of the uranyl cation.
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Affiliation(s)
- Arto Valkonen
- Department of Chemistry, Nanoscience Center, University of Jyväskylä, P.O. Box 35, 40014 Jyväskylä, Finland
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21
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Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles. J Mol Model 2017; 23:69. [PMID: 28197840 DOI: 10.1007/s00894-017-3252-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2016] [Accepted: 01/23/2017] [Indexed: 10/20/2022]
Abstract
The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) for both Th(IV) and NP(IV) should be 9, in accordance to some experimental and theoretical results from the literature. The structural values for average oxygen-metal distances are within 0.01 Å compared to experimental data, and also within the experimental error. The calculated ΔG Sol0 are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems.
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22
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Lucena AF, Bandeira NAG, Pereira CCL, Gibson JK, Marçalo J. Synthesis, structure and bonding of actinide disulphide dications in the gas phase. Phys Chem Chem Phys 2017; 19:10685-10694. [DOI: 10.1039/c7cp01446e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
CASPT2 computations reveal that gas-phase AnS22+ ions have ground states with triangular geometries and linear thio-actinyl structures are higher in energy, with a difference that increases upon moving from U to Pu.
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Affiliation(s)
- Ana F. Lucena
- Centro de Ciências e Tecnologias Nucleares
- Instituto Superior Técnico
- Universidade de Lisboa
- 2695-066 Bobadela LRS
- Portugal
| | - Nuno A. G. Bandeira
- Institute of Chemical Research of Catalonia (ICIQ)
- Barcelona Institute of Technology (BIST)
- 43007 Tarragona
- Spain
- Centro de Química Estrutural
| | - Cláudia C. L. Pereira
- Centro de Ciências e Tecnologias Nucleares
- Instituto Superior Técnico
- Universidade de Lisboa
- 2695-066 Bobadela LRS
- Portugal
| | - John K. Gibson
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Joaquim Marçalo
- Centro de Ciências e Tecnologias Nucleares
- Instituto Superior Técnico
- Universidade de Lisboa
- 2695-066 Bobadela LRS
- Portugal
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23
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Vidossich P, Lledós A, Ujaque G. First-Principles Molecular Dynamics Studies of Organometallic Complexes and Homogeneous Catalytic Processes. Acc Chem Res 2016; 49:1271-8. [PMID: 27268523 DOI: 10.1021/acs.accounts.6b00054] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Computational chemistry is a valuable aid to complement experimental studies of organometallic systems and their reactivity. It allows probing mechanistic hypotheses and investigating molecular structures, shedding light on the behavior and properties of molecular assemblies at the atomic scale. When approaching a chemical problem, the computational chemist has to decide on the theoretical approach needed to describe electron/nuclear interactions and the composition of the model used to approximate the actual system. Both factors determine the reliability of the modeling study. The community dedicated much effort to developing and improving the performance and accuracy of theoretical approaches for electronic structure calculations, on which the description of (inter)atomic interactions rely. Here, the importance of the model system used in computational studies is highlighted through examples from our recent research focused on organometallic systems and homogeneous catalytic processes. We show how the inclusion of explicit solvent allows the characterization of molecular events that would otherwise not be accessible in reduced model systems (clusters). These include the stabilization of nascent charged fragments via microscopic solvation (notably, hydrogen bonding), transfer of charge (protons) between distant fragments mediated by solvent molecules, and solvent coordination to unsaturated metal centers. Furthermore, when weak interactions are involved, we show how conformational and solvation properties of organometallic complexes are also affected by the explicit inclusion of solvent molecules. Such extended model systems may be treated under periodic boundary conditions, thus removing the cluster/continuum (or vacuum) boundary, and require a statistical mechanics simulation technique to sample the accessible configurational space. First-principles molecular dynamics, in which atomic forces are computed from electronic structure calculations (namely, density functional theory), is certainly the technique of choice to investigate chemical events in solution. This methodology is well established and thanks to advances in both algorithms and computational resources simulation times required for the modeling of chemical events are nowadays accessible, though the computational requirements use to be high. Specific applications reviewed here include mechanistic studies of the Shilov and Wacker processes, speciation in Pd chemistry, hydrogen bonding to metal centers, and the dynamics of agostic interactions.
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Affiliation(s)
- Pietro Vidossich
- Departament de Química,
Edifici C.n., Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Agustí Lledós
- Departament de Química,
Edifici C.n., Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Gregori Ujaque
- Departament de Química,
Edifici C.n., Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
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24
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Yang X, Chai Z, Wang D. Theoretical investigation on the mechanism and dynamics of oxo exchange of neptunyl(VI) hydroxide in aqueous solution. Phys Chem Chem Phys 2015; 17:7537-47. [PMID: 25706188 DOI: 10.1039/c4cp04586f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Four types of reaction mechanisms for the oxo ligand exchange of monomeric and dimeric neptunyl(VI) hydroxide in aqueous solution were explored computationally using density functional theory (DFT) and ab initio classical molecular dynamics. The obtained results were compared with previous studies on the oxo exchange of uranyl hydroxide, as well as with experiments. It is found that the stable T-shaped [NpO3(OH)3](3-) intermediate is a key species for oxo exchange in the proton transfer in mononuclear Path I and binuclear Path IV, similar to the case of uranyl(VI) hydroxide. Path I is thought to be the preferred oxo exchange mechanism for neptunyl(VI) hydroxide in our calculations, due to the lower activation energy (22.7 and 13.1 kcal mol(-1) for ΔG(‡) and ΔH(‡), respectively) of the overall reaction. Path II via a cis-neptunyl structure assisted by a water molecule might be a competitive channel against Path I with a mononuclear mechanism, owing to a rapid dynamical process occurring in Path II. In Path IV with the binuclear mechanism, oxo exchange is accomplished via the interaction between [NpO2(OH)4](2-) and T-shaped [NpO3(OH)3](3-) with a low activation energy for the rate-determining step, however, the overall energy required to fulfill the reaction is slightly higher than that in mononuclear Path I, suggesting a possible binuclear process in the higher energy region. The chemical bonding evolution along the reaction pathways was discussed by using topological methodologies of the electron localization function (ELF).
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Affiliation(s)
- Xia Yang
- CAS Key Laboratory of Nuclear Radiation and Nuclear Energy Techniques, and Multidisciplinary Initiative Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China.
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25
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Vasiliu M, Peterson KA, Gibson JK, Dixon DA. Reliable Potential Energy Surfaces for the Reactions of H2O with ThO2, PaO2+, UO22+, and UO2+. J Phys Chem A 2015; 119:11422-31. [DOI: 10.1021/acs.jpca.5b08618] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Monica Vasiliu
- Department
of Chemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
| | - Kirk A. Peterson
- Department
of Chemistry, Washington State University, Pullman, Washington 99164-4630 United States
| | - John K. Gibson
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - David A. Dixon
- Department
of Chemistry, The University of Alabama, Shelby Hall, Tuscaloosa, Alabama 35487-0336, United States
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26
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Chopra M, Choudhury N. Molecular dynamics simulation study of distribution and dynamics of aqueous solutions of uranyl ions: the effect of varying temperature and concentration. Phys Chem Chem Phys 2015; 17:27840-50. [PMID: 26439497 DOI: 10.1039/c5cp03769g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Investigating the characteristics of actinyl ions has been of great interest due to their direct relevance in the nuclear fuel cycle. All-atom molecular dynamics simulations have been employed to study the orientational structure and dynamics of aqueous solutions of uranyl ions of various concentrations. The orientational structure of water around a uranyl ion has been thoroughly investigated by calculating different orientational probability distributions corresponding to different molecular axes of water. The orientational distribution of water molecules in the first coordination shell of a uranyl ion is found to be markedly different from that in bulk water. Analysis of counterion distribution around the uranyl ion reveals the presence of nitrate ions along with water molecules in the first solvation shell. From the comparison of the number of coordinated water and nitrate ions at various uranyl nitrate concentrations, it is evident that these two species compete for occupying the first solvation shell of the uranyl ion. Orientational dynamics of water molecules about different molecular axes of water in the vicinity of uranyl ions have also been investigated and decreasing orientational mobility of water with increasing uranyl concentration has been found. However, it is observed that the orientational dynamics remains more or less the same whether we consider all the water molecules in the aqueous solution or only the solvation shell water molecules. The effect of temperature on the translational and orientational characteristics of the aqueous uranyl solutions has also been studied in detail.
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Affiliation(s)
- Manish Chopra
- Radiation Safety Systems Division, Bhabha Atomic Research Centre, Mumbai - 400 085, India
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27
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Matveev A, Li B, Rösch N. Uranyl Solvation by a Three-Dimensional Reference Interaction Site Model. J Phys Chem A 2015; 119:8702-13. [PMID: 26167741 DOI: 10.1021/acs.jpca.5b03712] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report an implementation of the three-dimensional reference interaction site model (3D RISM) that in particular addresses the treatment of the long-range Coulomb field of charged species, represented by point charges and/or a distributed charge density. A comparison of 1D and 3D results for atomic ions demonstrates a reasonable accuracy, even for a moderate size of the unit cell and a moderate grid resolution. In an application to uranyl complexes with 4-6 explicit aqua ligands and an implicit bulk solvent modeled by RISM, we show that the 3D technique is not susceptible to the deficiencies of the 1D technique exposed in our previous work [Li, Matveev, Krüger, Rösch, Comp. Theor. Chem. 2015, 1051, 151]. The 3D method eliminates the artificial superposition of explicit aqua ligands and the RISM medium and predicts essentially the same values for uranyl and uranyl-water bond lengths as a state-of-the-art polarizable continuum model. With the first solvation shell treated explicitly, the observables are nearly independent of the order of the closure relationship used when solving the set of integral equations for the various distribution functions. Furthermore, we calculated the activation barrier of water exchange with a hybrid approach that combines the 3D RISM model for the bulk aqueous solvent and a quantum mechanical description (at the level of electronic density functional theory) of uranyl interacting with explicitly represented water molecules. The calculated result agrees very well with experiment and the best theoretical estimates.
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Affiliation(s)
| | | | - Notker Rösch
- §Institute of High Performance Computing, Agency for Science, Technology and Research, 1 Fusionopolis Way, Connexis #16-16, Singapore 138632, Singapore
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28
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Gibson JK, Hu HS, Van Stipdonk MJ, Berden G, Oomens J, Li J. Infrared Multiphoton Dissociation Spectroscopy of a Gas-Phase Complex of Uranyl and 3-Oxa-Glutaramide: An Extreme Red-Shift of the [O═U═O]2+ Asymmetric Stretch. J Phys Chem A 2015; 119:3366-74. [DOI: 10.1021/jp512599e] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- John K. Gibson
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Berkeley, California 94720, United States
| | - Han-Shi Hu
- Department of Chemistry & Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Michael J. Van Stipdonk
- Department
of Chemistry and Biochemistry, Duquesne University, 600 Forbes
Avenue, Pittsburgh Pennsylvania 15282, United States
| | - Giel Berden
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University Nijmegen, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Jos Oomens
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University Nijmegen, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
- van
‘t Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands
| | - Jun Li
- Department of Chemistry & Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Tsinghua University, Beijing 100084, China
- William R.
Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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29
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Li B, Matveev AV, Krüger S, Rösch N. Uranyl solvation by a reference interaction site model. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2014.10.032] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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30
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Realistic Simulation of Organometallic Reactivity in Solution by Means of First-Principles Molecular Dynamics. STRUCTURE AND BONDING 2015. [DOI: 10.1007/430_2015_183] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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31
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Woidy P, Bühl M, Kraus F. [UO2(NH3)5]Br2·NH3: synthesis, crystal structure, and speciation in liquid ammonia solution by first-principles molecular dynamics simulations. Dalton Trans 2015; 44:7332-7. [DOI: 10.1039/c5dt00180c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
X-Ray diffraction and Car–Parrinello molecular dynamics simulations furnish insights into the speciation of uranyl(vi) in liquid ammonia, calling special attention to the effect of solvation on the U–N bond length and bond strength.
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Affiliation(s)
- Patrick Woidy
- Technische Universität München
- Zentrale Techn.-Wiss. Betriebseinheit
- Radiochemie München
- 85747 Garching
- Germany
| | - Michael Bühl
- EaStCHEM School of Chemistry
- North Haugh
- University of St. Andrews
- St. Andrews
- UK
| | - Florian Kraus
- Anorganische Chemie
- Fluorchemie
- Philipps-Universität Marburg
- 35032 Marburg
- Germany
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32
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Harrowfield JM, Schaeffer G. Lattice interactions and aggregation in solution—can the two be related? Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.10.142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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33
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Di Remigio R, Bast R, Frediani L, Saue T. Four-Component Relativistic Calculations in Solution with the Polarizable Continuum Model of Solvation: Theory, Implementation, and Application to the Group 16 Dihydrides H2X (X = O, S, Se, Te, Po). J Phys Chem A 2014; 119:5061-77. [DOI: 10.1021/jp507279y] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Roberto Di Remigio
- Department of Chemistry, Centre for Theoretical and Computational Chemistry, University of Tromsø
, N-9037 Tromsø, Norway
| | - Radovan Bast
- Department of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, AlbaNova University Center
, S-10691 Stockholm, Sweden
- PDC Center for High Performance Computing, Royal Institute of Technology
, S-10044 Stockholm, Sweden
| | - Luca Frediani
- Department of Chemistry, Centre for Theoretical and Computational Chemistry, University of Tromsø
, N-9037 Tromsø, Norway
| | - Trond Saue
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), CNRS/Université de Toulouse III (Paul Sabatier)
, 118 route de Narbonne, 31062 Toulouse, France
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34
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Benay G, Wipff G. Liquid–Liquid Extraction of Uranyl by TBP: The TBP and Ions Models and Related Interfacial Features Revisited by MD and PMF Simulations. J Phys Chem B 2014; 118:3133-49. [DOI: 10.1021/jp411332e] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- G. Benay
- Laboratoire MSM, UMR 7177, Institut de
Chimie, 1 rue B. Pascal, 67000 Strasbourg, France
| | - G. Wipff
- Laboratoire MSM, UMR 7177, Institut de
Chimie, 1 rue B. Pascal, 67000 Strasbourg, France
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35
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Density functional theory and molecular dynamics study of the uranyl ion (UO2)2+. J Mol Model 2014; 20:2150. [DOI: 10.1007/s00894-014-2150-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2013] [Accepted: 01/21/2014] [Indexed: 10/25/2022]
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36
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Lucena AF, Odoh SO, Zhao J, Marçalo J, Schreckenbach G, Gibson JK. Oxo-Exchange of Gas-Phase Uranyl, Neptunyl, and Plutonyl with Water and Methanol. Inorg Chem 2014; 53:2163-70. [DOI: 10.1021/ic402824k] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Ana F. Lucena
- Centro
de Ciências e Tecnologias Nucleares, Instituto Superior Técnico, Universidade de Lisboa, 2695-066 Bobadela LRS, Portugal
| | - Samuel O. Odoh
- Environmental
and Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Department
of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2
| | - Jing Zhao
- Beijing
Center for Crystal Research and Development, Key Laboratory of Functional
Crystals and Laser Technology, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Joaquim Marçalo
- Centro
de Ciências e Tecnologias Nucleares, Instituto Superior Técnico, Universidade de Lisboa, 2695-066 Bobadela LRS, Portugal
| | - Georg Schreckenbach
- Department
of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2
| | - John K. Gibson
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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37
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Moll H, Rossberg A, Steudtner R, Drobot B, Müller K, Tsushima S. Uranium(VI) Chemistry in Strong Alkaline Solution: Speciation and Oxygen Exchange Mechanism. Inorg Chem 2014; 53:1585-93. [DOI: 10.1021/ic402664n] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Henry Moll
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
| | - André Rossberg
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
| | - Robin Steudtner
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
| | - Björn Drobot
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
| | - Katharina Müller
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
| | - Satoru Tsushima
- Institute
of Resource Ecology, Helmholtz−Zentrum Dresden−Rossendorf (HZDR), Bautzner Landstraße 400, Dresden 01328, Germany
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38
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Yu HZ, Li C, Chen BH, Yang CT, Wang D, Fu Y, Hu S, Dang Z. Promising density functional theory methods for predicting the structures of uranyl complexes. RSC Adv 2014. [DOI: 10.1039/c4ra08264h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
By examining the overall accuracy of different theoretical methods in predicting the U–X bond distances (of a series uranyl complexes), we found that both the global-hybrid meta-GGA functional of BB1K and the range-seperated LC-BLYP functional are fairly good (even better than the popular B3LYP method).
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Affiliation(s)
- Hai-Zhu Yu
- Department of Polymer Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083, China
| | - Can Li
- Department of Polymer Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083, China
| | - Bai-Hua Chen
- Institute of Nuclear Physics and Chemistry
- CAEP
- Mianyang, China
| | - Chu-Ting Yang
- Institute of Nuclear Physics and Chemistry
- CAEP
- Mianyang, China
| | - Dongrui Wang
- Department of Polymer Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083, China
| | - Yao Fu
- Department of Chemistry
- University of Science and Technology of China
- Hefei 230026, China
| | - Sheng Hu
- Institute of Nuclear Physics and Chemistry
- CAEP
- Mianyang, China
| | - Zhimin Dang
- Department of Polymer Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083, China
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39
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Bühl M, Sieffert N, Wipff G. Structure of a uranyl peroxo complex in aqueous solution from first-principles molecular dynamics simulations. Dalton Trans 2014; 43:11129-37. [DOI: 10.1039/c3dt52413b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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40
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Odoh SO, Bylaska EJ, de Jong WA. Coordination and hydrolysis of plutonium ions in aqueous solution using Car-Parrinello molecular dynamics free energy simulations. J Phys Chem A 2013; 117:12256-67. [PMID: 24168210 DOI: 10.1021/jp4096248] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Car-Parrinello molecular dynamics (CPMD) simulations have been used to examine the hydration structures, coordination energetics, and the first hydrolysis constants of Pu(3+), Pu(4+), PuO2(+), and PuO2(2+) ions in aqueous solution at 300 K. The coordination numbers and structural properties of the first shell of these ions are in good agreement with available experimental estimates. The hexavalent PuO2(2+) species is coordinated to five aquo ligands while the pentavalent PuO2(+) complex is coordinated to four aquo ligands. The Pu(3+) and Pu(4+) ions are both coordinated to eight water molecules. The first hydrolysis constants obtained for Pu(3+) and PuO2(2+) are 6.65 and 5.70, respectively, all within 0.3 pH unit of the experimental values (6.90 and 5.50, respectively). The hydrolysis constant of Pu(4+), 0.17, disagrees with the value of -0.60 in the most recent update of the Nuclear Energy Agency Thermochemical Database (NEA-TDB) but supports recent experimental findings. The hydrolysis constant of PuO2(+), 9.51, supports the experimental results of Bennett et al. [Radiochim. Acta 1992, 56, 15]. A correlation between the pKa of the first hydrolysis reaction and the effective charge of the plutonium center was found.
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Affiliation(s)
- Samuel O Odoh
- Environmental and Molecular Science Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States
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41
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Maerzke KA, Goff GS, Runde WH, Schneider WF, Maginn EJ. Structure and Dynamics of Uranyl(VI) and Plutonyl(VI) Cations in Ionic Liquid/Water Mixtures via Molecular Dynamics Simulations. J Phys Chem B 2013; 117:10852-68. [DOI: 10.1021/jp405473b] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
| | - George S. Goff
- Chemistry
Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Wolfgang H. Runde
- Chemistry
Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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42
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Kerisit S, Liu C. Structure, Kinetics, and Thermodynamics of the Aqueous Uranyl(VI) Cation. J Phys Chem A 2013; 117:6421-32. [DOI: 10.1021/jp404594p] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Sebastien Kerisit
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington
99352, United States
| | - Chongxuan Liu
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington
99352, United States
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43
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Benay G, Wipff G. Liquid–Liquid Extraction of Uranyl by an Amide Ligand: Interfacial Features Studied by MD and PMF Simulations. J Phys Chem B 2013; 117:7399-415. [DOI: 10.1021/jp4028386] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- G. Benay
- Laboratoire MSM, UMR 7177, Institut de Chimie, 1 rue B. Pascal, 67000 Strasbourg, France
| | - G. Wipff
- Laboratoire MSM, UMR 7177, Institut de Chimie, 1 rue B. Pascal, 67000 Strasbourg, France
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44
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Pomogaev V, Tiwari SP, Rai N, Goff GS, Runde W, Schneider WF, Maginn EJ. Development and application of effective pairwise potentials for UO2n+, NpO2n+, PuO2n+, and AmO2n+ (n = 1, 2) ions with water. Phys Chem Chem Phys 2013; 15:15954-63. [DOI: 10.1039/c3cp52444b] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Bühl M, Sieffert N, Partouche A, Chaumont A, Wipff G. Speciation of La(III) Chloride Complexes in Water and Acetonitrile: A Density Functional Study. Inorg Chem 2012. [DOI: 10.1021/ic302255a] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael Bühl
- School of Chemistry, University of St. Andrews, North Haugh, St. Andrews,
Fife KY16 9ST, U.K
| | - Nicolas Sieffert
- UMR-5250
CNRS, Département de Chimie Moléculaire, Université Joseph Fourier Grenoble I, BP 53,
38041 Grenoble Cedex 9, France
| | - Aurélie Partouche
- UMR-5250
CNRS, Département de Chimie Moléculaire, Université Joseph Fourier Grenoble I, BP 53,
38041 Grenoble Cedex 9, France
| | - Alain Chaumont
- UMR 7177 CNRS, Laboratoire MSM, Institut
de Chimie, 1 rue Blaise Pascal, 67000 Strasbourg, France
| | - Georges Wipff
- UMR 7177 CNRS, Laboratoire MSM, Institut
de Chimie, 1 rue Blaise Pascal, 67000 Strasbourg, France
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46
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Bhatnagar N, Kamath G, Chelst I, Potoff JJ. Direct calculation of 1-octanol-water partition coefficients from adaptive biasing force molecular dynamics simulations. J Chem Phys 2012; 137:014502. [PMID: 22779660 DOI: 10.1063/1.4730040] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The 1-octanol-water partition coefficient log K(ow) of a solute is a key parameter used in the prediction of a wide variety of complex phenomena such as drug availability and bioaccumulation potential of trace contaminants. In this work, adaptive biasing force molecular dynamics simulations are used to determine absolute free energies of hydration, solvation, and 1-octanol-water partition coefficients for n-alkanes from methane to octane. Two approaches are evaluated; the direct transfer of the solute from 1-octanol to water phase, and separate transfers of the solute from the water or 1-octanol phase to vacuum, with both methods yielding statistically indistinguishable results. Calculations performed with the TIP4P and SPC∕E water models and the TraPPE united-atom force field for n-alkanes show that the choice of water model has a negligible effect on predicted free energies of transfer and partition coefficients for n-alkanes. A comparison of calculations using wet and dry octanol phases shows that the predictions for log K(ow) using wet octanol are 0.2-0.4 log units lower than for dry octanol, although this is within the statistical uncertainty of the calculation.
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Affiliation(s)
- Navendu Bhatnagar
- Department of Chemical Engineering and Materials Science, Wayne State University, Detroit, Michigan 48202, USA
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47
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Knope KE, Soderholm L. Solution and Solid-State Structural Chemistry of Actinide Hydrates and Their Hydrolysis and Condensation Products. Chem Rev 2012; 113:944-94. [DOI: 10.1021/cr300212f] [Citation(s) in RCA: 269] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Karah E. Knope
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439,
United States
| | - L. Soderholm
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439,
United States
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48
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Rios D, del Carmen Michelini M, Lucena AF, Marçalo J, Gibson JK. On the Origins of Faster Oxo Exchange for Uranyl(V) versus Plutonyl(V). J Am Chem Soc 2012; 134:15488-96. [DOI: 10.1021/ja305800q] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Daniel Rios
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
| | | | - Ana F. Lucena
- Unidade de
Ciências Químicas
e Radiofarmacêuticas, Instituto Tecnológico e Nuclear, Instituto Superior Técnico, 2686-953 Sacavém,
Portugal
| | - Joaquim Marçalo
- Unidade de
Ciências Químicas
e Radiofarmacêuticas, Instituto Tecnológico e Nuclear, Instituto Superior Técnico, 2686-953 Sacavém,
Portugal
| | - John K. Gibson
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
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49
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Rai N, Tiwari SP, Maginn EJ. Force field development for actinyl ions via quantum mechanical calculations: an approach to account for many body solvation effects. J Phys Chem B 2012; 116:10885-97. [PMID: 22857380 DOI: 10.1021/jp3028275] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Advances in computational algorithms and methodologies make it possible to use highly accurate quantum mechanical calculations to develop force fields (pair-wise additive intermolecular potentials) for condensed phase simulations. Despite these advances, this approach faces numerous hurdles for the case of actinyl ions, AcO2(n+) (high-oxidation-state actinide dioxo cations), mainly due to the complex electronic structure resulting from an interplay of s, p, d, and f valence orbitals. Traditional methods use a pair of molecules (“dimer”) to generate a potential energy surface (PES) for force field parametrization based on the assumption that many body polarization effects are negligible. We show that this is a poor approximation for aqueous phase uranyl ions and present an alternative approach for the development of actinyl ion force fields that includes important many body solvation effects. Force fields are developed for the UO2(2+) ion with the SPC/Fw, TIP3P, TIP4P, and TIP5P water models and are validated by carrying out detailed molecular simulations on the uranyl aqua ion, one of the most characterized actinide systems. It is shown that the force fields faithfully reproduce available experimental structural data and hydration free energies. Failure to account for solvation effects when generating PES leads to overbinding between UO2(2+) and water, resulting in incorrect hydration free energies and coordination numbers. A detailed analysis of arrangement of water molecules in the first and second solvation shell of UO2(2+) is presented. The use of a simple functional form involving the sum of Lennard-Jones + Coulomb potentials makes the new force field compatible with a large number of available molecular simulation engines and common force fields.
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Affiliation(s)
- Neeraj Rai
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, 182 Fitzpatrick Hall, Notre Dame, Indiana 46556, United States
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50
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Chaumont A, Wipff G. Bromide complexation by the Eu(III) lanthanide cation in dry and humid ionic liquids: a molecular dynamics PMF study. Chemphyschem 2012; 13:1677-86. [PMID: 22556119 DOI: 10.1002/cphc.201200063] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2012] [Indexed: 11/08/2022]
Abstract
We report a molecular dynamics study on the EuBr(n)(3-n) complexes (n=0 to 6) formed upon complexation of Br(-) by Eu(3+) in the [BMI][PF(6)], [BMI][Tf(2)N] and [MeBu(3)N][Tf(2)N] ionic liquids (ILs), to compare the effect of the IL anion (PF(6)(-) versus Tf(2)N(-)), the IL cation (BMI(+) versus MeBu(3)N(+)) and the "IL humidity" on their solvation and stability. In "dry" solutions all complexes remain stable and the first coordination shell of Eu(3+) is purely anionic (Br(-) and IL anions), surrounded by IL cations (BMI(+) or MeBu(3)N(+) ions). Long range "onion type" solvation features (up to 20 Å from Eu(3+)), with alternating cation-rich and anion-rich solvent shells, are observed around the different complexes. The comparison of gas phase-optimized structures of EuBr(n)(3-n) complexes (that are unstable for n=5 and 6) with those observed in solution points to the importance of solvation forces on the nature of the complex, with a higher stabilization by imidazolium- than by ammonium-based dry ILs. Adding water to the IL has different effects, depending on the IL. In the highly hygroscopic [BMI][PF(6)] IL, Br(-) ligands are displaced by water, to finally form Eu(H(2)O)(9)(3+). In the less "humid" [BMI][Tf(2)N], the EuBr(n)(3-n) complexes do not dissociate and coordinate at most 1-2 H(2)O molecules. We also calculated the free-energy profiles (Potential of Mean Force calculations) for the stepwise complexation of Br(-), and found significant solvent effects. EuBr(6)(3-) is predicted to form in both [BMI][PF(6)] and [BMI][Tf(2)N], but not in [MeBu(3)N][Tf(2)N], mainly due to weaker interactions with the cationic solvation shell. First steps are found to be more exergonic in the PF(6)(-)- than in the Tf(2)N(-)-based IL. Molecular dynamics (MD) comparisons between ILs and classical solvents (acetonitrile and water) are also reported, affording good agreement with the experimental observations of Br(-) complexation by trivalent lanthanides in these classical solvents.
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Affiliation(s)
- Alain Chaumont
- Laboratoire MSM, UMR CNRS 7177, Institut de Chimie, 1 rue B. Pascal, 67 000 Strasbourg, France
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