1
|
Satta M, Catone D, Castrovilli MC, Nicolanti F, Cartoni A. Ionic Route to Atmospheric Relevant HO 2 and Protonated Formaldehyde from Methanol Cation and O 2. Molecules 2024; 29:1484. [PMID: 38611764 PMCID: PMC11013456 DOI: 10.3390/molecules29071484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 04/14/2024] Open
Abstract
Gas-phase ion chemistry influences atmospheric processes, particularly in the formation of cloud condensation nuclei by producing ionic and neutral species in the upper troposphere-stratosphere region impacted by cosmic rays. This work investigates an exothermic ionic route to the formation of hydroperoxyl radical (HO2) and protonated formaldehyde from methanol radical cation and molecular oxygen. Methanol, a key atmospheric component, contributes to global emissions and participates in various chemical reactions affecting atmospheric composition. The two reactant species are of fundamental interest due to their role in atmospheric photochemical reactions, and HO2 is also notable for its production during lightning events. Our experimental investigations using synchrotron radiation reveal a fast hydrogen transfer from the methyl group of methanol to oxygen, leading to the formation of CH2OH+ and HO2. Computational analysis corroborates the experimental findings, elucidating the reaction dynamics and hydrogen transfer pathway. The rate coefficients are obtained from experimental data and shows that this reaction is fast and governed by capture theory. Our study contributes to a deeper understanding of atmospheric processes and highlights the role of ion-driven reactions in atmospheric chemistry.
Collapse
Affiliation(s)
- Mauro Satta
- Institute for the Study of Nanostructured Materials-CNR (ISMN-CNR), Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, 00185 Rome, Italy
| | - Daniele Catone
- Istituto di Struttura della Materia-CNR (ISM-CNR), Area della Ricerca di Roma 2, Via del Fosso del Cavaliere 100, 00133 Rome, Italy;
| | | | - Francesca Nicolanti
- Department of Physics, Sapienza University of Rome, P. le Aldo Moro 5, 00185 Rome, Italy;
| | - Antonella Cartoni
- Department of Chemistry, Sapienza University of Rome, P. le Aldo Moro 5, 00185 Rome, Italy
| |
Collapse
|
2
|
Pihlava L, Svensson PHW, Kukk E, Kooser K, De Santis E, Tõnisoo A, Käämbre T, André T, Akiyama T, Hessenthaler L, Giehr F, Björneholm O, Caleman C, Berholts M. Shell-dependent photofragmentation dynamics of a heavy-atom-containing bifunctional nitroimidazole radiosensitizer. Phys Chem Chem Phys 2024; 26:8879-8890. [PMID: 38426309 DOI: 10.1039/d4cp00367e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Radiation therapy uses ionizing radiation to break chemical bonds in cancer cells, thereby causing DNA damage and leading to cell death. The therapeutic effectiveness can be further increased by making the tumor cells more sensitive to radiation. Here, we investigate the role of the initial halogen atom core hole on the photofragmentation dynamics of 2-bromo-5-iodo-4-nitroimidazole, a potential bifunctional radiosensitizer. Bromine and iodine atoms were included in the molecule to increase the photoionization cross-section of the radiosensitizer at higher photon energies. The fragmentation dynamics of the molecule was studied experimentally in the gas phase using photoelectron-photoion-photoion coincidence spectroscopy and computationally using Born-Oppenheimer molecular dynamics. We observed significant changes between shallow core (I 4d, Br 3d) and deep core (I 3d) ionization in fragment formation and their kinetic energies. Despite the fact, that the ions ejected after deep core ionization have higher kinetic energies, we show that in a cellular environment, the ion spread is not much larger, keeping the damage well-localized.
Collapse
Affiliation(s)
- Lassi Pihlava
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
| | - Pamela H W Svensson
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Edwin Kukk
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
| | - Kuno Kooser
- Institute of Physics, University of Tartu, W. Ostwald 1, EST-50411, Tartu, Estonia.
| | - Emiliano De Santis
- Department of Chemistry - BMC, University of Uppsala, SE-75123 Uppsala, Sweden
| | - Arvo Tõnisoo
- Institute of Physics, University of Tartu, W. Ostwald 1, EST-50411, Tartu, Estonia.
| | - Tanel Käämbre
- Institute of Physics, University of Tartu, W. Ostwald 1, EST-50411, Tartu, Estonia.
| | - Tomas André
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Tomoko Akiyama
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Lisa Hessenthaler
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Flavia Giehr
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Olle Björneholm
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
| | - Carl Caleman
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden
- Center for Free-Electron Laser Science, DESY, DE-22607 Hamburg, Germany
| | - Marta Berholts
- Institute of Physics, University of Tartu, W. Ostwald 1, EST-50411, Tartu, Estonia.
| |
Collapse
|
3
|
Svensson PHW, Schwob L, Grånäs O, Unger I, Björneholm O, Timneanu N, Lindblad R, Vieli AL, Zamudio-Bayer V, Timm M, Hirsch K, Caleman C, Berholts M. Heavy element incorporation in nitroimidazole radiosensitizers: molecular-level insights into fragmentation dynamics. Phys Chem Chem Phys 2024; 26:770-779. [PMID: 37888897 DOI: 10.1039/d3cp03800a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2023]
Abstract
The present study investigates the photofragmentation behavior of iodine-enhanced nitroimidazole-based radiosensitizer model compounds in their protonated form using near-edge X-ray absorption mass spectrometry and quantum mechanical calculations. These molecules possess dual functionality: improved photoabsorption capabilities and the ability to generate species that are relevant to cancer sensitization upon photofragmentation. Four samples were investigated by scanning the generated fragments in the energy regions around C 1s, N 1s, O 1s, and I 3d-edges with a particular focus on NO2+ production. The experimental summed ion yield spectra are explained using the theoretical near-edge X-ray absorption fine structure spectrum based on density functional theory. Born-Oppenheimer-based molecular dynamics simulations were performed to investigate the fragmentation processes.
Collapse
Affiliation(s)
- Pamela H W Svensson
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Lucas Schwob
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - Oscar Grånäs
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Isaak Unger
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Olle Björneholm
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Nicusor Timneanu
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Rebecka Lindblad
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Anna-Lydia Vieli
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
| | - Vicente Zamudio-Bayer
- Abteilung für Hochempfindliche Röntgenspektroskopie, Helmholtz Zentrum Berlin für Materialien und Energie, 12489 Berlin-Adlershof, Germany
| | - Martin Timm
- Abteilung für Hochempfindliche Röntgenspektroskopie, Helmholtz Zentrum Berlin für Materialien und Energie, 12489 Berlin-Adlershof, Germany
| | - Konstantin Hirsch
- Abteilung für Hochempfindliche Röntgenspektroskopie, Helmholtz Zentrum Berlin für Materialien und Energie, 12489 Berlin-Adlershof, Germany
| | - Carl Caleman
- Department of Physics and Astronomy, University of Uppsala, SE-75120 Uppsala, Sweden.
- Center for Free-Electron Laser Science, DESY, DE-22607 Hamburg, Germany
| | - Marta Berholts
- Institute of Physics, University of Tartu, W. Ostwald 1, EST-50411, Tartu, Estonia.
| |
Collapse
|
4
|
Pihlava L, Berholts M, Niskanen J, Vladyka A, Kooser K, Stråhlman C, Eng-Johnsson P, Kivimäki A, Kukk E. Photodissociation of bromine-substituted nitroimidazole radiosensitizers. Phys Chem Chem Phys 2023; 25:13004-13011. [PMID: 37165880 DOI: 10.1039/d2cp04888d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Heavy elements and some nitroimidazoles both exhibit radiosensitizing properties through different mechanisms. In an effort to see how the overall radiosensitivity might be affected when the two radiosensitizers are combined in the same molecule, we studied the gas-phase photodissociation of two brominated nitroimidazoles and a bromine-free reference sample. Synchrotron radiation was employed to initiate the photodynamics and energy-resolved multiparticle coincidence spectroscopy was used to study the ensuing dissociation. We observed the brominated samples releasing high amounts of potentially radiosensitizing fragments upon dissociation. Since bromination also increases the likelihood of the drug molecule being ionised per a given X-ray dose, we conclude that heavy-element substitution of nitroimidazoles appears to be a viable path towards new, potent radiosensitizer drugs.
Collapse
Affiliation(s)
- Lassi Pihlava
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
| | - Marta Berholts
- Institute of Physics, University of Tartu, EE-50411 Tartu, Estonia
| | - Johannes Niskanen
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
| | - Anton Vladyka
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
| | - Kuno Kooser
- Institute of Physics, University of Tartu, EE-50411 Tartu, Estonia
| | - Christian Stråhlman
- Department of Materials Science and Applied Mathematics, Malmö University, SE-20506 Malmö, Sweden
| | | | - Antti Kivimäki
- MAX IV Laboratory, Lund University, SE-20100 Lund, Sweden
| | - Edwin Kukk
- Department of Physics and Astronomy, University of Turku, FI-20014 Turku, Finland.
- Laboratoire de Chimie Physique-Matière et Rayonnement, UMR 7614, CNRS, Sorbonne University, FR-75005 Paris, France
| |
Collapse
|
5
|
Perspectives of Gas Phase Ion Chemistry: Spectroscopy and Modeling. CONDENSED MATTER 2022. [DOI: 10.3390/condmat7030046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The study of ions in the gas phase has a long history and has involved both chemists and physicists. The interplay of their competences with the use of very sophisticated commercial and/or homemade instrumentations and theoretical models has improved the knowledge of thermodynamics and kinetics of many chemical reactions, even if still many stages of these processes need to be fully understood. The new technologies and the novel free-electron laser facilities based on plasma acceleration open new opportunities to investigate the chemical reactions in some unrevealed fundamental aspects. The synchrotron light source can be put beside the FELs, and by mass spectrometric techniques and spectroscopies coupled with versatile ion sources it is possible to really change the state of the art of the ion chemistry in different areas such as atmospheric and astro chemistry, plasma chemistry, biophysics, and interstellar medium (ISM). In this manuscript we review the works performed by a joint combination of the experimental studies of ion–molecule reactions with synchrotron radiation and theoretical models adapted and developed to the experimental evidence. The review concludes with the perspectives of ion–molecule reactions by using FEL instrumentations as well as pump probe measurements and the initial attempt in the development of more realistic theoretical models for the prospective improvement of our predictive capability.
Collapse
|