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For: Halter M, Sisan DR, Chalfoun J, Stottrup BL, Cardone A, Dima AA, Tona A, Plant AL, Elliott JT. Cell cycle dependent TN-C promoter activity determined by live cell imaging. Cytometry A 2012;79:192-202. [PMID: 22045641 DOI: 10.1002/cyto.a.21028] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Number Cited by Other Article(s)
1
Asmar AJ, Benson ZA, Peskin AP, Chalfoun J, Simon M, Halter M, Plant AL. High-volume, label-free imaging for quantifying single-cell dynamics in induced pluripotent stem cell colonies. PLoS One 2024;19:e0298446. [PMID: 38377138 PMCID: PMC10878516 DOI: 10.1371/journal.pone.0298446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 01/23/2024] [Indexed: 02/22/2024]  Open
2
Bianchini RM, Kurz EU. The analysis of protein recruitment to laser microirradiation-induced DNA damage in live cells: Best practices for data analysis. DNA Repair (Amst) 2023;129:103545. [PMID: 37524003 DOI: 10.1016/j.dnarep.2023.103545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 07/20/2023] [Accepted: 07/24/2023] [Indexed: 08/02/2023]
3
Kwee E, Peterson A, Halter M, Elliott J. Practical application of microsphere samples for benchmarking a quantitative phase imaging system. Cytometry A 2020;99:1022-1032. [PMID: 33305901 PMCID: PMC8195315 DOI: 10.1002/cyto.a.24291] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 11/11/2020] [Accepted: 12/01/2020] [Indexed: 01/12/2023]
4
Plant AL, Halter M, Stinson J. Probing pluripotency gene regulatory networks with quantitative live cell imaging. Comput Struct Biotechnol J 2020;18:2733-2743. [PMID: 33101611 PMCID: PMC7560648 DOI: 10.1016/j.csbj.2020.09.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 09/14/2020] [Accepted: 09/15/2020] [Indexed: 11/12/2022]  Open
5
Hubbard JB, Halter M, Sarkar S, Plant AL. The role of fluctuations in determining cellular network thermodynamics. PLoS One 2020;15:e0230076. [PMID: 32160263 PMCID: PMC7065797 DOI: 10.1371/journal.pone.0230076] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 02/20/2020] [Indexed: 12/28/2022]  Open
6
May M, Denecke B, Schroeder T, Götz M, Faissner A. Cell tracking in vitro reveals that the extracellular matrix glycoprotein Tenascin-C modulates cell cycle length and differentiation in neural stem/progenitor cells of the developing mouse spinal cord. Biol Open 2018;7:7/7/bio027730. [PMID: 30045859 PMCID: PMC6078350 DOI: 10.1242/bio.027730] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
7
Lineage mapper: A versatile cell and particle tracker. Sci Rep 2016;6:36984. [PMID: 27853188 PMCID: PMC5113068 DOI: 10.1038/srep36984] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Accepted: 10/19/2016] [Indexed: 12/23/2022]  Open
8
Bhadriraju K, Halter M, Amelot J, Bajcsy P, Chalfoun J, Vandecreme A, Mallon BS, Park KY, Sista S, Elliott JT, Plant AL. Large-scale time-lapse microscopy of Oct4 expression in human embryonic stem cell colonies. Stem Cell Res 2016;17:122-9. [PMID: 27286574 PMCID: PMC5012928 DOI: 10.1016/j.scr.2016.05.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/17/2015] [Revised: 04/15/2016] [Accepted: 05/20/2016] [Indexed: 01/06/2023]  Open
9
CHALFOUN J, MAJURSKI M, PESKIN A, BREEN C, BAJCSY P, BRADY M. Empirical gradient threshold technique for automated segmentation across image modalities and cell lines. J Microsc 2015;260:86-99. [DOI: 10.1111/jmi.12269] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Accepted: 04/30/2015] [Indexed: 02/02/2023]
10
Model M. Intensity calibration and flat-field correction for fluorescence microscopes. CURRENT PROTOCOLS IN CYTOMETRY 2014;68:10.14.1-10.14.10. [PMID: 24692055 DOI: 10.1002/0471142956.cy1014s68] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
11
Birkenkamp-Demtröder K, Hahn SA, Mansilla F, Thorsen K, Maghnouj A, Christensen R, Øster B, Ørntoft TF. Keratin23 (KRT23) knockdown decreases proliferation and affects the DNA damage response of colon cancer cells. PLoS One 2013;8:e73593. [PMID: 24039993 PMCID: PMC3767798 DOI: 10.1371/journal.pone.0073593] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Accepted: 07/25/2013] [Indexed: 11/18/2022]  Open
12
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M. Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells. J Microsc 2012;249:41-52. [PMID: 23126432 DOI: 10.1111/j.1365-2818.2012.03678.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
13
Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model. Proc Natl Acad Sci U S A 2012;109:19262-7. [PMID: 23115330 DOI: 10.1073/pnas.1207544109] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
14
Nandy K, Gudla PR, Amundsen R, Meaburn KJ, Misteli T, Lockett SJ. Automatic segmentation and supervised learning-based selection of nuclei in cancer tissue images. Cytometry A 2012;81:743-54. [PMID: 22899462 PMCID: PMC6362837 DOI: 10.1002/cyto.a.22097] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Revised: 05/18/2012] [Accepted: 06/12/2012] [Indexed: 01/14/2023]
15
Mancia A, Elliott JT, Halter M, Bhadriraju K, Tona A, Spurlin TA, Middlebrooks BL, Baatz JE, Warr GW, Plant AL. Quantitative methods to characterize morphological properties of cell lines. Biotechnol Prog 2012;28:1069-78. [DOI: 10.1002/btpr.1564] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2011] [Revised: 03/23/2012] [Indexed: 12/22/2022]
16
Erdmann G, Volz C, Boutros M. Systematic approaches to dissect biological processes in stem cells by image-based screening. Biotechnol J 2012;7:768-78. [DOI: 10.1002/biot.201200117] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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