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Verhoeff J, van Asten S, Kuijper L, van den Braber M, Amstalden-van Hove E, Haselberg R, Kalay H, Garcia-Vallejo JJ. A monodispersed metal-complexing peptide-based polymer for mass cytometry enabling spectral applications. N Biotechnol 2024; 81:33-42. [PMID: 38493996 DOI: 10.1016/j.nbt.2024.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/17/2024] [Accepted: 03/11/2024] [Indexed: 03/19/2024]
Abstract
We report the synthesis of a novel class of metal-complexing peptide-based polymers, which we name HyperMAPs (Hyper-loaded MetAl-complexed Polymers). The controlled solid-phase synthesis of HyperMAPs' scaffold peptide provides our polymer with a well-defined molecular structure that allows for an accurate on-design assembly of a wide variety of metals. The peptide-scaffold features a handle for direct conjugation to antibodies or any other biomolecules by means of a thiol-maleimide-click or aldehyde-oxime reaction, a fluorogenic moiety for biomolecule conjugation tracking, and a well-defined number of functional groups for direct incorporation of metal-chelator complexes. Since metal-chelator complexes are prepared in a separate reaction prior to incorporation to the peptide scaffold, polymers can be designed to contain specific ratios of metal isotopes, providing each polymer with a unique CyTOF spectral fingerprint. We demonstrate the complexing of 21 different metals using two different chelators and provide evidence of the application of HyperMAPs on a 13 parameter CyTOF panel and compare its performance to monoisotopic metal-conjugated antibodies.
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Affiliation(s)
- Jan Verhoeff
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands; Amsterdam UMC, University of Amsterdam, Tytgat Institute for Liver and Intestinal Research; Amsterdam 1105 BK, the Netherlands.
| | - Saskia van Asten
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands.
| | - Lisan Kuijper
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands.
| | - Marlous van den Braber
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands.
| | - Erika Amstalden-van Hove
- Division of Bioanalytical Chemistry, Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.
| | - Rob Haselberg
- Division of Bioanalytical Chemistry, Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands.
| | - Hakan Kalay
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands.
| | - Juan J Garcia-Vallejo
- Amsterdam UMC, VU Amsterdam, Department of Molecular Cell Biology & Immunology, Amsterdam Infection & Immunity, Cancer Center Amsterdam, Amsterdam, the Netherlands.
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Lannigan J. Flow cytometry has seen the light: All of it. Cytometry A 2022; 101:809-811. [PMID: 36203398 DOI: 10.1002/cyto.a.24694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/16/2022] [Indexed: 01/27/2023]
Affiliation(s)
- Joanne Lannigan
- Flow Cytometry Support Services, LLC, Alexandria, Virginia, USA
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Brestoff JR, Frater JL. Contemporary Challenges in Clinical Flow Cytometry: Small Samples, Big Data, Little Time. J Appl Lab Med 2022; 7:931-944. [DOI: 10.1093/jalm/jfab176] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 11/15/2021] [Indexed: 12/13/2022]
Abstract
Abstract
Background
Immunophenotypic analysis of cell populations by flow cytometry has an established role in primary diagnosis and disease monitoring of many hematologic diseases. A persistent problem in evaluation of specimens is suboptimal cell counts and low cell viability, which results in an undesirable rate of analysis failure. In addition, the increased amount of data generated in flow cytometry challenges existing data analysis and reporting paradigms.
Content
We describe current and emerging technological improvements in cell analysis that allow the clinical laboratory to perform multiparameter analysis of specimens, including those with low cell counts and other quality issues. These technologies include conventional multicolor flow cytometry and new high-dimensional technologies, such as spectral flow cytometry and mass cytometry that enable detection of over 40 antigens simultaneously. The advantages and disadvantages of each approach are discussed. We also describe new innovations in flow cytometry data analysis, including artificial intelligence-aided techniques.
Summary
Improvements in analytical technology, in tandem with innovations in data analysis, data storage, and reporting mechanisms, help to optimize the quality of clinical flow cytometry. These improvements are essential because of the expanding role of flow cytometry in patient care.
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Affiliation(s)
- Jonathan R Brestoff
- Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO
| | - John L Frater
- Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO
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Jensen HA, Wnek R. Analytical performance of a
25‐marker
spectral cytometry immune monitoring assay in peripheral blood. Cytometry A 2020. [DOI: 10.1002/cyto.a.24290] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Holly A. Jensen
- Translational Molecular Biomarkers Merck & Co., Inc Kenilworth New Jersey USA
| | - Richard Wnek
- Translational Molecular Biomarkers Merck & Co., Inc Kenilworth New Jersey USA
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