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Bogolyubov DS, Shabelnikov SV, Travina AO, Sulatsky MI, Bogolyubova IO. Special Nuclear Structures in the Germinal Vesicle of the Common Frog with Emphasis on the So-Called Karyosphere Capsule. J Dev Biol 2023; 11:44. [PMID: 38132712 PMCID: PMC10744300 DOI: 10.3390/jdb11040044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 12/05/2023] [Accepted: 12/07/2023] [Indexed: 12/23/2023] Open
Abstract
The karyosphere (karyosome) is a structure that forms in the oocyte nucleus-germinal vesicle (GV)-at the diplotene stage of meiotic prophase due to the assembly of all chromosomes in a limited portion of the GV. In some organisms, the karyosphere has an extrachromosomal external capsule, the marker protein of which is nuclear F-actin. Despite many years of theories about the formation of the karyosphere capsule (KC) in the GV of the common frog Rana temporaria, we present data that cast doubt on its existence, at least in this species. Specific extrachromosomal strands, which had been considered the main elements of the frog's KC, do not form a continuous layer around the karyosphere and, according to immunogold labeling, do not contain structural proteins, such as actin and lamin B. At the same time, F-actin is indeed noticeably concentrated around the karyosphere, creating the illusion of a capsule at the light microscopy/fluorescence level. The barrier-to-autointegration factor (BAF) and one of its functional partners-LEMD2, an inner nuclear membrane protein-are not localized in the strands, suggesting that the strands are not functional counterparts of the nuclear envelope. The presence of characteristic strands in the GV of R. temporaria late oocytes may reflect an excess of SMC1 involved in the structural maintenance of diplotene oocyte chromosomes at the karyosphere stage, since SMC1 has been shown to be the most abundant protein in the strands. Other characteristic microstructures-the so-called annuli, very similar in ultrastructure to the nuclear pore complexes-do not contain nucleoporins Nup35 and Nup93, and, therefore, they cannot be considered autonomous pore complexes, as previously thought. Taken together, our data indicate that traditional ideas about the existence of the R. temporaria KC as a special structural compartment of the GV are to be revisited.
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Affiliation(s)
- Dmitry S. Bogolyubov
- Institute of Cytology of the Russian Academy of Sciences, St. Petersburg 194064, Russia; (S.V.S.); (A.O.T.); (M.I.S.); (I.O.B.)
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Fedorova S, Dorogova NV, Karagodin DA, Oshchepkov DY, Brusentsov II, Klimova NV, Baricheva EM. The complex role of transcription factor GAGA in germline death during Drosophila spermatogenesis: transcriptomic and bioinformatic analyses. PeerJ 2023; 11:e14063. [PMID: 36643636 PMCID: PMC9835689 DOI: 10.7717/peerj.14063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Accepted: 08/26/2022] [Indexed: 01/11/2023] Open
Abstract
The GAGA protein (also known as GAF) is a transcription factor encoded by the Trl gene in D. melanogaster. GAGA is involved in the regulation of transcription of many genes at all stages of fly development and life. Recently, we investigated the participation of GAGA in spermatogenesis and discovered that Trl mutants experience massive degradation of germline cells in the testes. Trl underexpression induces autophagic death of spermatocytes, thereby leading to reduced testis size. Here, we aimed to determine the role of the transcription factor GAGA in the regulation of ectopic germline cell death. We investigated how Trl underexpression affects gene expression in the testes. We identified 15,993 genes in three biological replicates of our RNA-seq analysis and compared transcript levels between hypomorphic Trl R85/Trl 362 and Oregon testes. A total of 2,437 differentially expressed genes were found, including 1,686 upregulated and 751 downregulated genes. At the transcriptional level, we detected the development of cellular stress in the Trl-mutant testes: downregulation of the genes normally expressed in the testes (indicating slowed or abrogated spermatocyte differentiation) and increased expression of metabolic and proteolysis-related genes, including stress response long noncoding RNAs. Nonetheless, in the Flybase Gene Ontology lists of genes related to cell death, autophagy, or stress, there was no enrichment with GAGA-binding sites. Furthermore, we did not identify any specific GAGA-dependent cell death pathway that could regulate spermatocyte death. Thus, our data suggest that GAGA deficiency in male germline cells leads to an imbalance of metabolic processes, impaired mitochondrial function, and cell death due to cellular stress.
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Affiliation(s)
- Svetlana Fedorova
- Department of Cell Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Natalya V. Dorogova
- Department of Cell Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Dmitriy A. Karagodin
- Department of Cell Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Dmitry Yu Oshchepkov
- Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Ilya I. Brusentsov
- Department of Cell Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Natalya V. Klimova
- Department of Molecular Genetics, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
| | - Elina M. Baricheva
- Department of Cell Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation
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Dorogova NV, Zubkova AE, Fedorova ЕV, Bolobolova ЕU, Baricheva ЕМ. [Lack of GAGA protein in Trl mutants causes massive cell death in Drosophila spermatogenesis and oogenesis]. Vavilovskii Zhurnal Genet Selektsii 2021; 25:292-300. [PMID: 34901726 PMCID: PMC8627872 DOI: 10.18699/vj21.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 12/24/2020] [Accepted: 12/25/2020] [Indexed: 11/26/2022] Open
Abstract
Белок дрозофилы GAGA (GAF) является фактором эпигенетической регуляции транскрипции
большой группы генов с широким разнообразием клеточных функций. GAF кодируется геном Trithorax-like
(Trl), который экспрессируется в различных органах и тканях на всех стадиях онтогенеза дрозофилы. Мутации этого гена вызывают множественные нарушения развития. В предыдущих работах мы показали, что этот
белок необходим для развития половой системы как самцов, так и самок дрозофилы. Снижение экспрессии
гена Trl приводило ко множественным нарушениям спермато- и оогенеза. Одно из значительных нарушений было связано с массовой деградацией и потерей клеток зародышевого пути, что позволило предположить, что этот белок вовлечен в регуляцию клеточной гибели. В представленной работе мы провели более
детальное цитологическое исследование, чтобы определить, какой тип гибели клеток зародышевого пути
характерен для Trl-мутантов, и происходят ли нарушения или изменения этого процесса по сравнению с
нормой. Полученные результаты показали, что недостаток белка GAF вызывает массовую гибель клеток зародышевого пути как у самок, так и самцов дрозофилы, но проявляется эта гибель в зависимости от пола
по-разному. У самок, мутантных по гену Trl, фенотипически этот процесс не отличается от нормы и в гибнущих яйцевых камерах выявлены признаки апоптоза и аутофагии клеток зародышевого пути. У самцов, мутантных по гену Trl, в отличие от самок, не обнаружены признаки апоптоза. У самцов мутации Trl индуцируют
массовую гибель клеток через аутофагию, что не характерно для сперматогенеза дрозофилы и не описано
ранее ни в норме, ни у мутаций по другим генам. Таким образом, недостаток GAF у мутантов Trl приводит
к усилению апоптотической и аутофагической гибели клеток зародышевого пути. Эктопическая клеточная
гибель и атрофия зародышевой линии, вероятно, связаны с нарушением экспрессии генов-мишеней GAGAфактора, среди которых есть гены, регулирующие как апоптоз, так и аутофагию.
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Affiliation(s)
- N V Dorogova
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - A E Zubkova
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia
| | - Е V Fedorova
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Е U Bolobolova
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Е М Baricheva
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
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Ogienko AA, Yarinich LA, Fedorova EV, Dorogova NV, Bayborodin SI, Baricheva EM, Pindyurin AV. GAGA Regulates Border Cell Migration in Drosophila. Int J Mol Sci 2020; 21:E7468. [PMID: 33050455 PMCID: PMC7589894 DOI: 10.3390/ijms21207468] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Revised: 09/30/2020] [Accepted: 10/07/2020] [Indexed: 12/13/2022] Open
Abstract
Collective cell migration is a complex process that happens during normal development of many multicellular organisms, as well as during oncological transformations. In Drosophila oogenesis, a small set of follicle cells originally located at the anterior tip of each egg chamber become motile and migrate as a cluster through nurse cells toward the oocyte. These specialized cells are referred to as border cells (BCs) and provide a simple and convenient model system to study collective cell migration. The process is known to be complexly regulated at different levels and the product of the slow border cells (slbo) gene, the C/EBP transcription factor, is one of the key elements in this process. However, little is known about the regulation of slbo expression. On the other hand, the ubiquitously expressed transcription factor GAGA, which is encoded by the Trithorax-like (Trl) gene was previously demonstrated to be important for Drosophila oogenesis. Here, we found that Trl mutations cause substantial defects in BC migration. Partially, these defects are explained by the reduced level of slbo expression in BCs. Additionally, a strong genetic interaction between Trl and slbo mutants, along with the presence of putative GAGA binding sites within the slbo promoter and enhancer, suggests the direct regulation of this gene by GAGA. This idea is supported by the reduction in the slbo-Gal4-driven GFP expression within BC clusters in Trl mutant background. However, the inability of slbo overexpression to compensate defects in BC migration caused by Trl mutations suggests that there are other GAGA target genes contributing to this process. Taken together, the results define GAGA as another important regulator of BC migration in Drosophila oogenesis.
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Affiliation(s)
- Anna A. Ogienko
- Department of the Regulation of Genetic Processes, Institute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia;
| | - Lyubov A. Yarinich
- Department of the Regulation of Genetic Processes, Institute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia;
- Faculty of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia
| | - Elena V. Fedorova
- Department of Cell Biology, Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia; (E.V.F.); (N.V.D.); (S.I.B.); (E.M.B.)
| | - Natalya V. Dorogova
- Department of Cell Biology, Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia; (E.V.F.); (N.V.D.); (S.I.B.); (E.M.B.)
| | - Sergey I. Bayborodin
- Department of Cell Biology, Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia; (E.V.F.); (N.V.D.); (S.I.B.); (E.M.B.)
| | - Elina M. Baricheva
- Department of Cell Biology, Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia; (E.V.F.); (N.V.D.); (S.I.B.); (E.M.B.)
| | - Alexey V. Pindyurin
- Department of the Regulation of Genetic Processes, Institute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia;
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Xu X, Bi H, Wang Y, Li X, Xu J, Liu Z, He L, Li K, Huang Y. Disruption of the ovarian serine protease (Osp) gene causes female sterility in Bombyx mori and Spodoptera litura. PEST MANAGEMENT SCIENCE 2020; 76:1245-1255. [PMID: 31595658 DOI: 10.1002/ps.5634] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 09/13/2019] [Accepted: 07/09/2018] [Indexed: 06/10/2023]
Abstract
BACKGROUND Precise regulation of oogenesis is crucial to female reproduction. Seventy percent of pests belong to lepidopteran species, so it would be interesting to explore the highly conserved genes involved in oogenesis that do not affect growth and development in the lepidopteran model, Bombyx mori. This can provide potential target genes for pest control and promote the development of insect sterility technology. RESULTS In lepidopteran species, ovarian serine protease (Osp), which encodes a member of the serine protease family, is essential for oogenesis. In this study, we used transgenic CRISPR/Cas9 technology to obtain Osp mutants in the model lepidopteran insect Bombyx mori and in the lepidopteran agricultural pest Spodoptera litura. Sequence analysis of mutants revealed an array of deletions in Osp loci in both species. We found that the deletion of Osp resulted in female sterility, whereas male fertility was not affected. Although B. mori and S. litura mutant females mated normally, they laid fewer eggs than wild-type females and eggs did not hatch. CONCLUSION Osp is crucial for female reproductive success in two species of Lepidoptera. As the Osp gene is highly conserved in insect species, this gene is a potential molecular target for genetic-based pest management. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Xia Xu
- School of Life Science, East China Normal University, Shanghai, China
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Honglun Bi
- School of Life Science, East China Normal University, Shanghai, China
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Yaohui Wang
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Xiaowei Li
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Jun Xu
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Zulian Liu
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Lin He
- School of Life Science, East China Normal University, Shanghai, China
| | - Kai Li
- School of Life Science, East China Normal University, Shanghai, China
| | - Yongping Huang
- Key Laboratory of Insect Developmental and Evolutionary Biology, Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
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