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Eisen KE, Powers JM, Raguso RA, Campbell DR. An analytical pipeline to support robust research on the ecology, evolution, and function of floral volatiles. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.1006416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Research on floral volatiles has grown substantially in the last 20 years, which has generated insights into their diversity and prevalence. These studies have paved the way for new research that explores the evolutionary origins and ecological consequences of different types of variation in floral scent, including community-level, functional, and environmentally induced variation. However, to address these types of questions, novel approaches are needed that can handle large sample sizes, provide quality control measures, and make volatile research more transparent and accessible, particularly for scientists without prior experience in this field. Drawing upon a literature review and our own experiences, we present a set of best practices for next-generation research in floral scent. We outline methods for data collection (experimental designs, methods for conducting field collections, analytical chemistry, compound identification) and data analysis (statistical analysis, database integration) that will facilitate the generation and interpretation of quality data. For the intermediate step of data processing, we created the R package bouquet, which provides a data analysis pipeline. The package contains functions that enable users to convert chromatographic peak integrations to a filtered data table that can be used in subsequent statistical analyses. This package includes default settings for filtering out non-floral compounds, including background contamination, based on our best-practice guidelines, but functions and workflows can be easily customized as necessary. Next-generation research into the ecology and evolution of floral scent has the potential to generate broadly relevant insights into how complex traits evolve, their genomic architecture, and their consequences for ecological interactions. In order to fulfill this potential, the methodology of floral scent studies needs to become more transparent and reproducible. By outlining best practices throughout the lifecycle of a project, from experimental design to statistical analysis, and providing an R package that standardizes the data processing pipeline, we provide a resource for new and seasoned researchers in this field and in adjacent fields, where high-throughput and multi-dimensional datasets are common.
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Cna'ani A, Dener E, Ben-Zeev E, Günther J, Köllner TG, Tzin V, Seifan M. Phylogeny and abiotic conditions shape the diel floral emission patterns of desert Brassicaceae species. PLANT, CELL & ENVIRONMENT 2021; 44:2656-2671. [PMID: 33715174 DOI: 10.1111/pce.14045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 03/04/2021] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
A key facet of floral scent is diel fluctuations in emission, often studied in the context of plant-pollinator interactions, while contributions of environment and phylogeny remain overlooked. Here, we ask if these factors are involved in shaping temporal variations in scent emission. To that end, we coupled light/dark floral emission measurements of 17 desert Brassicaceae species with environmental and phylogenetic data to explore the individual/combined impacts of these predictors on diel emission patterns. We further investigated these patterns by conducting high-resolution emission measurements in a subset of genetically distant species with contrasting temporal dynamics. While diel shifts in magnitude and richness of emission were strongly affected by genetic relatedness, they also reflect the environmental conditions under which the species grow. Specifically, light/dark emission ratios were negatively affected by an increase in winter temperatures, known to impact both plant physiology and insect locomotion, and sandy soil fractions, previously shown to exert stress that tempers with diel metabolic rhythms. Additionally, the biosynthetic origins of the compounds were associated with their corresponding production patterns, possibly to maximize emission efficacy. Using a multidisciplinary chemical/ecological approach, we uncover and differentiate the main factors shaping floral scent diel fluctuations, highlighting their consequences under changing global climate.
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Affiliation(s)
- Alon Cna'ani
- Jacob Blaustein Center for Scientific Cooperation, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer campus, Midreshet Ban-Gurion, Israel
| | - Efrat Dener
- The Albert Katz International School for Desert Studies, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer campus, Midreshet Ban-Gurion, Israel
| | - Efrat Ben-Zeev
- Nancy and Stephen Grand Israel National Center for Personalized Medicine, The Department of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Jan Günther
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany
- Section of Plant Biochemistry, Department of Plant and Environmental Science, University of Copenhagen, Copenhagen, Denmark
| | - Tobias G Köllner
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Vered Tzin
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer campus, Midreshet Ban-Gurion, Israel
| | - Merav Seifan
- Mitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer campus, Midreshet Ban-Gurion, Israel
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Milet-Pinheiro P, Santos PSC, Prieto-Benítez S, Ayasse M, Dötterl S. Differential Evolutionary History in Visual and Olfactory Floral Cues of the Bee-Pollinated Genus Campanula (Campanulaceae). PLANTS (BASEL, SWITZERLAND) 2021; 10:1356. [PMID: 34371561 PMCID: PMC8309401 DOI: 10.3390/plants10071356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 06/28/2021] [Accepted: 06/30/2021] [Indexed: 11/25/2022]
Abstract
Visual and olfactory floral signals play key roles in plant-pollinator interactions. In recent decades, studies investigating the evolution of either of these signals have increased considerably. However, there are large gaps in our understanding of whether or not these two cue modalities evolve in a concerted manner. Here, we characterized the visual (i.e., color) and olfactory (scent) floral cues in bee-pollinated Campanula species by spectrophotometric and chemical methods, respectively, with the aim of tracing their evolutionary paths. We found a species-specific pattern in color reflectance and scent chemistry. Multivariate phylogenetic statistics revealed no influence of phylogeny on floral color and scent bouquet. However, univariate phylogenetic statistics revealed a phylogenetic signal in some of the constituents of the scent bouquet. Our results suggest unequal evolutionary pathways of visual and olfactory floral cues in the genus Campanula. While the lack of phylogenetic signal on both color and scent bouquet points to external agents (e.g., pollinators, herbivores) as evolutionary drivers, the presence of phylogenetic signal in at least some floral scent constituents point to an influence of phylogeny on trait evolution. We discuss why external agents and phylogeny differently shape the evolutionary paths in floral color and scent of closely related angiosperms.
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Affiliation(s)
- Paulo Milet-Pinheiro
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert-Einstein Allee, 89081 Ulm, Germany; (P.S.C.S.); (M.A.)
| | - Pablo Sandro Carvalho Santos
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert-Einstein Allee, 89081 Ulm, Germany; (P.S.C.S.); (M.A.)
| | - Samuel Prieto-Benítez
- Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos-ESCET, C/Tulipán, s/n, Móstoles, 28933 Madrid, Spain;
- Ecotoxicology of Air Pollution Group, Environmental Department, CIEMAT, Avda. Complutense, 40, 28040 Madrid, Spain
| | - Manfred Ayasse
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert-Einstein Allee, 89081 Ulm, Germany; (P.S.C.S.); (M.A.)
| | - Stefan Dötterl
- Department of Biosciences, Paris-Lodron-University of Salzburg, Hellbrunnerstrasse 34, 5020 Salzburg, Austria;
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Plant Volatile Organic Compounds Evolution: Transcriptional Regulation, Epigenetics and Polyploidy. Int J Mol Sci 2020; 21:ijms21238956. [PMID: 33255749 PMCID: PMC7728353 DOI: 10.3390/ijms21238956] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 11/18/2020] [Accepted: 11/23/2020] [Indexed: 12/15/2022] Open
Abstract
Volatile organic compounds (VOCs) are emitted by plants as a consequence of their interaction with biotic and abiotic factors, and have a very important role in plant evolution. Floral VOCs are often involved in defense and pollinator attraction. These interactions often change rapidly over time, so a quick response to those changes is required. Epigenetic factors, such as DNA methylation and histone modification, which regulate both genes and transcription factors, might trigger adaptive responses to these evolutionary pressures as well as regulating the rhythmic emission of VOCs through circadian clock regulation. In addition, transgenerational epigenetic effects and whole genome polyploidy could modify the generation of VOCs’ profiles of offspring, contributing to long-term evolutionary shifts. In this article, we review the available knowledge about the mechanisms that may act as epigenetic regulators of the main VOC biosynthetic pathways, and their importance in plant evolution.
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Joffard N, Arnal V, Buatois B, Schatz B, Montgelard C. Floral scent evolution in the section Pseudophrys: pollinator-mediated selection or phylogenetic constraints? PLANT BIOLOGY (STUTTGART, GERMANY) 2020; 22:881-889. [PMID: 32130747 DOI: 10.1111/plb.13104] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 02/07/2020] [Indexed: 06/10/2023]
Abstract
Sexually deceptive orchid species from the Mediterranean genus Ophrys usually interact with one or a few pollinator species by means of specific floral scents. In this study, we investigated the respective role of pollinator-mediated selection and phylogenetic constraints in the evolution of floral scents in the section Pseudophrys. We built a phylogenetic tree of 19 Pseudophrys species based on three nuclear loci; we gathered a dataset on their pollination interactions from the literature and from our own field data; and we extracted and analysed their floral scents using solid phase microextraction and gas chromatography-mass spectrometry. We then quantified the phylogenetic signal carried by floral scents and investigated the link between plant-pollinator interactions and floral scent composition using phylogenetic comparative methods. We confirmed the monophyly of the section Pseudophrys and demonstrated the existence of three main clades within this section. We found that floral scent composition is affected by both phylogenetic relationships among Ophrys species and pollination interactions, with some compounds (especially fatty acid esters) carrying a significant phylogenetic signal and some (especially alkenes and alkadienes) generating dissimilarities between closely related Pseudophrys pollinated by different insects. Our results show that in the section Pseudophrys, floral scents are shaped both by pollinator-mediated selection and by phylogenetic constraints, but that the relative importance of these two evolutionary forces differ among compound classes, probably reflecting distinct selective pressures imposed upon behaviourally active and non-active compounds.
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Affiliation(s)
- N Joffard
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS - Université de Montpellier - Université Paul Valéry Montpellier - EPHE, Montpellier, France
| | - V Arnal
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS - Université de Montpellier - Université Paul Valéry Montpellier - EPHE, Montpellier, France
| | - B Buatois
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS - Université de Montpellier - Université Paul Valéry Montpellier - EPHE, Montpellier, France
| | - B Schatz
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS - Université de Montpellier - Université Paul Valéry Montpellier - EPHE, Montpellier, France
| | - C Montgelard
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS - Université de Montpellier - Université Paul Valéry Montpellier - EPHE, Montpellier, France
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Correlation in plant volatile metabolites: physiochemical properties as a proxy for enzymatic pathways and an alternative metric of biosynthetic constraint. CHEMOECOLOGY 2020. [DOI: 10.1007/s00049-020-00322-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Benvenuti S, Mazzoncini M, Cioni PL, Flamini G. Wildflower-pollinator interactions: Which phytochemicals are involved? Basic Appl Ecol 2020. [DOI: 10.1016/j.baae.2020.03.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Weber MG, Cacho NI, Phan MJQ, Disbrow C, Ramírez SR, Strauss SY. The evolution of floral signals in relation to range overlap in a clade of California Jewelflowers (Streptanthus s.l.). Evolution 2018; 72:798-807. [PMID: 29464694 DOI: 10.1111/evo.13456] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 02/05/2018] [Accepted: 02/06/2018] [Indexed: 01/18/2023]
Abstract
Because of their function as reproductive signals in plants, floral traits experience distinct selective pressures related to their role in speciation, reinforcement, and prolonged coexistence with close relatives. However, few studies have investigated whether population-level processes translate into detectable signatures at the macroevolutionary scale. Here, we ask whether patterns of floral trait evolution and range overlap across a clade of California Jewelflowers reflect processes hypothesized to shape floral signal differentiation at the population level. We found a pattern of divergence in floral scent composition across the clade such that close relatives had highly disparate floral scents given their age. Accounting for range overlap with close relatives explained additional variation in floral scent over time, with sympatric species pairs having diverged more than allopatric species pairs given their age. However, three other floral traits (flower size, scent complexity and flower color) did not fit these patterns, failing to deviate from a null Brownian motion model of evolution. Together, our results suggest that selection for divergence among close relatives in the composition of floral scents may play a key, sustained role in mediating speciation and coexistence dynamics across this group, and that signatures of these dynamics may persist at the macroevolutionary scale.
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Affiliation(s)
- Marjorie G Weber
- Center for Population Biology, University of California, Davis, California 95616.,Current Address: Department of Plant Biology and Ecology, Evolutionary Biology and Behavior Program, Michigan State University, East Lansing, Michigan 48823
| | - N Ivalú Cacho
- Instituto de Biología, Universidad Nacional Autónoma de México, CDMX 04510, México.,Department of Evolution and Ecology, University of California, Davis, California 95616
| | - Martin J Q Phan
- Department of Evolution and Ecology, University of California, Davis, California 95616
| | - Caprice Disbrow
- Department of Evolution and Ecology, University of California, Davis, California 95616
| | - Santiago R Ramírez
- Center for Population Biology, University of California, Davis, California 95616.,Department of Evolution and Ecology, University of California, Davis, California 95616
| | - Sharon Y Strauss
- Center for Population Biology, University of California, Davis, California 95616.,Department of Evolution and Ecology, University of California, Davis, California 95616
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