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Ke PJ, Zee PC, Fukami T. Dynamic plant-soil microbe interactions: the neglected effect of soil conditioning time. THE NEW PHYTOLOGIST 2021; 231:1546-1558. [PMID: 34105771 DOI: 10.1111/nph.17420] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 04/12/2021] [Indexed: 06/12/2023]
Abstract
Plant-soil feedback (PSF) may change in strength over the life of plant individuals as plants continue to modify the soil microbial community. However, the temporal variation in PSF is rarely quantified and its impacts on plant communities remain unknown. Using a chronosequence reconstructed from annual aerial photographs of a coastal dune ecosystem, we characterized > 20-yr changes in soil microbial communities associated with individuals of the four dominant perennial species, one legume and three nonlegume. We also quantified the effects of soil biota on conspecific and heterospecific seedling performance in a glasshouse experiment that preserved soil properties of these individual plants. Additionally, we used a general individual-based model to explore the potential consequences of temporally varying PSF on plant community assembly. In all plant species, microbial communities changed with plant age. However, responses of plants to the turnover in microbial composition depended on the identity of the seedling species: only the soil biota effect experienced by the nonlegume species became increasingly negative with longer soil conditioning. Model simulation suggested that temporal changes in PSF could affect the transient dynamics of plant community assembly. These results suggest that temporal variation in PSF over the life of individual plants should be considered to understand how PSF structures plant communities.
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Affiliation(s)
- Po-Ju Ke
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
- Department of Ecology & Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA
| | - Peter C Zee
- Department of Biology, University of Mississippi, University, MS, 38677, USA
| | - Tadashi Fukami
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
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2
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Martorell C, MartÍnez-Blancas A, García-Meza D. Plant-soil feedbacks depend on drought stress, functional group, and evolutionary relatedness in a semiarid grassland. Ecology 2021; 102:e03499. [PMID: 34314034 DOI: 10.1002/ecy.3499] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 04/15/2021] [Accepted: 06/04/2021] [Indexed: 11/08/2022]
Abstract
Plant-soil feedback (PSF) occurs when plants change the biota and physicochemical properties of the soil, and these changes affect future survival or growth of plants. PSF depends on several factors such as plant functional attributes (e.g., life cycle or photosynthetic metabolism) and the environment. PSF often turn positive under dry conditions because soil biota confers drought tolerance. Conspecifics and close relatives share pathogens and consume similar resources, exerting negative PSF on each other. These ideas have mostly been tested under controlled conditions, while field studies remain scarce. To reevaluate these findings in nature, we analyzed plant-soil feedbacks over a drought-stress gradient in a phosphorus-limited semiarid grassland. We planted seedlings of 17 species in plots where community composition had been monitored for six years. To determine PSF intensity, we measured how seedling longevity was affected by previous occupancy of conspecifics and heterospecifics. The previous occupancy-survival relationship (OSR) was used as a proxy for PSF. Evidence for OSRs was found in one-third of the species pairs, with inconclusive evidence for the rest suggesting weak feedbacks. This is in line with the expectation that PSFs in the field are weaker than under controlled conditions. As expected, positive PSFs were more frequent as drought stress increased. The strongest OSRs were caused in dry plots by C4 perennial grasses, which had very positive OSRs on several C3 annual forbs, but negative effects on each other. Well-documented differences between these two functional groups may explain this result: C3 plants are more sensitive to drought, and thus may be favored by tolerance-conferring microbiota; in contrast, water-efficient C4 perennial grasses compete for phosphorus strongly, perhaps driving strong negative PSFs between them. Finally, close relatives had more negative OSRs on each other than on distant relatives as expected, although only in dry plots. This pattern was mostly due to the negative effects of closely related C4 grasses under dry conditions, and their positive effects on distantly related dicots. Our results highlight the importance of plant traits and of the environmental context in determining the direction and strength of PSFs under field conditions.
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Affiliation(s)
- Carlos Martorell
- Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, 04510, Ciudad de México, Mexico
| | - Alejandra MartÍnez-Blancas
- Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, 04510, Ciudad de México, Mexico.,Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Avenida Universitaria 3000, Coyoacán, C.P. 04510, Ciudad de México, Mexico
| | - Diego García-Meza
- Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, 04510, Ciudad de México, Mexico
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3
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Wang S, Callaway RM. Plasticity in response to plant-plant interactions and water availability. Ecology 2021; 102:e03361. [PMID: 33829488 DOI: 10.1002/ecy.3361] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 12/02/2020] [Accepted: 01/13/2021] [Indexed: 01/13/2023]
Abstract
The plastic responses of plants to abiotic and biotic environmental factors have generally been addressed separately; thus we have a poor understanding of how these factors interact. For example, little is known about the effects of plant-plant interactions on the plasticity of plants in response to water availability. Furthermore, few studies have compared the effects of intra- and interspecific interactions on plastic responses to abiotic factors. To explore the effects of intraspecific and interspecific plant-plant interactions on plant responses to water availability, we grew Leucanthemum vulgare and Potentilla recta with a conspecific or the other species, and grew pairs of each species as controls in pots with the roots, but not shoots, physically separated. We subjected these competitive arrangements to mesic and dry conditions, and then measured shoot mass, root mass, total mass and root : shoot ratio and calculated plasticity in these traits. The total biomass of both species was highly suppressed by both intra- and interspecific interactions in mesic soil conditions. However, in drier soil, intraspecific interactions for both species and the effect of P. recta on L. vulgare were facilitative. For plasticity in response to water supply, when adjusted for total biomass, drought increased shoot mass, and decreased root mass and root : shoot ratios for both species in intraspecific interactions. When grown alone, there were no plastic responses in any trait except total mass, for either species. Our results suggested that plants interacting with other plants often show improved tolerance for drought than those grown alone, perhaps because of neighbor-induced shifts in plasticity in biomass allocation. Facilitative effects might also be promoted by plasticity to drought in root : shoot ratios.
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Affiliation(s)
- Shu Wang
- College of Forestry, Guizhou University, Guiyang, 550025, China.,Division of Biological Sciences and the Institute on Ecosystems, University of Montana, Missoula, Montana, 59812, USA
| | - Ragan M Callaway
- Division of Biological Sciences and the Institute on Ecosystems, University of Montana, Missoula, Montana, 59812, USA
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McKenna TP, Koziol L, Bever JD, Crews TE, Sikes BA. Abiotic and biotic context dependency of perennial crop yield. PLoS One 2020; 15:e0234546. [PMID: 32589642 PMCID: PMC7319328 DOI: 10.1371/journal.pone.0234546] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 05/27/2020] [Indexed: 11/23/2022] Open
Abstract
Perennial crops in agricultural systems can increase sustainability and the magnitude of ecosystem services, but yield may depend upon biotic context, including soil mutualists, pathogens and cropping diversity. These biotic factors themselves may interact with abiotic factors such as drought. We tested whether perennial crop yield depended on soil microbes, water availability and crop diversity by testing monocultures and mixtures of three perennial crop species: a novel perennial grain (intermediate wheatgrass-Thinopyrum intermedium-- that produces the perennial grain Kernza®), a potential perennial oilseed crop (Silphium intregrifolium), and alfalfa (Medicago sativa). Perennial crop performance depended upon both water regime and the presence of living soil, most likely the arbuscular mycorrhizal (AM) fungi in the whole soil inoculum from a long term perennial monoculture and from an undisturbed native remnant prairie. Specifically, both Silphium and alfalfa strongly benefited from AM fungi. The presence of native prairie AM fungi had a greater benefit to Silphium in dry pots and alfalfa in wet pots than AM fungi present in the perennial monoculture soil. Kernza did not benefit from AM fungi. Crop mixtures that included Kernza overyielded, but overyielding depended upon inoculation. Specifically, mixtures with Kernza overyielded most strongly in sterile soil as Kernza compensated for poor growth of Silphium and alfalfa. This study identifies the importance of soil biota and the context dependence of benefits of native microbes and the overyielding of mixtures in perennial crops.
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Affiliation(s)
| | - Liz Koziol
- University of Kansas, Lawrence, Kansas, United States of America
| | - James D. Bever
- University of Kansas, Lawrence, Kansas, United States of America
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5
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Heinze J, Wacker A, Kulmatiski A. Plant-soil feedback effects altered by aboveground herbivory explain plant species abundance in the landscape. Ecology 2020; 101:e03023. [PMID: 32083736 DOI: 10.1002/ecy.3023] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 01/08/2020] [Accepted: 01/30/2020] [Indexed: 01/03/2023]
Abstract
Relatively little is known about how plant-soil feedbacks (PSFs) may affect plant growth in field conditions where factors such as herbivory may be important. Using a potted experiment in a grassland, we measured PSFs with and without aboveground insect herbivory for 20 plant species. We then compared PSF values to plant landscape abundance. Aboveground herbivory had a large negative effect on PSF values. For 15 of 20 species, PSFs were more negative with herbivory than without. This occurred because plant biomass on "home" soils was smaller with herbivory than without. PSF values with herbivory were correlated with plant landscape abundance, whereas PSF values without herbivory were not. Shoot nitrogen concentrations suggested that plants create soils that increase nitrogen uptake, but that greater shoot nitrogen values increase herbivory and that the net effect of positive PSF and greater aboveground herbivory is less aboveground biomass. Results provided clear evidence that PSFs alone have limited power in explaining species abundances and that herbivory has stronger effects on plant biomass and growth on the landscape. Our results provide a potential explanation for observed differences between greenhouse and field PSF experiments and suggest that PSF experiments need to consider important biotic interactions, like aboveground herbivory, particularly when the goal of PSF research is to understand plant growth in field conditions.
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Affiliation(s)
- Johannes Heinze
- Institute of Biochemistry and Biology, University of Potsdam, Maulbeerallee 1, D-14469, Potsdam, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Altensteinstrasse 6, 14195, Berlin, Germany
| | - Alexander Wacker
- Zoological Institute and Museum, University of Greifswald, Loitzer Strasse 26, 17489, Greifswald, Germany
| | - Andrew Kulmatiski
- Department of Wildland Resources and the Ecology Center, Utah State University, 84322-5230, Logan, Utah, USA
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Duell EB, Zaiger K, Bever JD, Wilson GWT. Climate Affects Plant-Soil Feedback of Native and Invasive Grasses: Negative Feedbacks in Stable but Not in Variable Environments. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00419] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Lubin TK, Schultz P, Bever JD, Alexander HM. Are two strategies better than one? Manipulation of seed density and soil community in an experimental prairie restoration. Restor Ecol 2019. [DOI: 10.1111/rec.12953] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Terra K. Lubin
- Department of Ecology and Evolutionary BiologyUniversity of Kansas Lawrence KS 66045 U.S.A
- Kansas Biological SurveyUniversity of Kansas Lawrence KS 66045 U.S.A
| | - Peggy Schultz
- Kansas Biological SurveyUniversity of Kansas Lawrence KS 66045 U.S.A
- Environmental Studies ProgramUniversity of Kansas Lawrence KS 66045 U.S.A
| | - James D. Bever
- Department of Ecology and Evolutionary BiologyUniversity of Kansas Lawrence KS 66045 U.S.A
- Kansas Biological SurveyUniversity of Kansas Lawrence KS 66045 U.S.A
| | - Helen M. Alexander
- Department of Ecology and Evolutionary BiologyUniversity of Kansas Lawrence KS 66045 U.S.A
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Kulmatiski A. Plant-Soil Feedbacks Predict Native but Not Non-native Plant Community Composition: A 7-Year Common-Garden Experiment. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00326] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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9
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Revillini D, Wilson GWT, Miller RM, Lancione R, Johnson NC. Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks. FRONTIERS IN PLANT SCIENCE 2019; 10:1018. [PMID: 31475019 PMCID: PMC6702339 DOI: 10.3389/fpls.2019.01018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Accepted: 07/22/2019] [Indexed: 05/04/2023]
Abstract
Plants may actively cultivate microorganisms in their roots and rhizosphere that enhance their nutrition. To develop cropping strategies that substitute mineral fertilizers for beneficial root symbioses, we must first understand how microbial communities associated with plant roots differ among plant taxa and how they respond to fertilization. Arbuscular mycorrhizal (AM) fungi and rhizobacteria are of particular interest because they enhance nutrient availability to plants and perform a suite of nutrient cycling functions. The purpose of this experiment is to examine the root and soil microbiome in a long-term switchgrass (Panicum virgatum) biofuel feedstock experiment and determine how AM fungi and rhizobacteria respond to plant diversity and soil fertility. We hypothesize that intra- and interspecific plant diversity, nitrogen fertilization (+N), and their interaction will influence the biomass and community composition of AM fungi and rhizobacteria. We further hypothesize that +N will reduce the abundance of nitrogenase-encoding nifH genes on the rhizoplane. Roots and soils were sampled from three switchgrass cultivars (Cave-in-Rock, Kanlow, Southlow) grown in monoculture, intraspecific mixture, and interspecific planting mixtures with either Andropogon gerardii or diverse native tallgrass prairie species. Molecular sequencing was performed on root and soil samples, fatty acid extractions were assessed to determine microbial biomass, and quantitative polymerase chain reaction (qPCR) was performed on nifH genes from the rhizoplane. Sequence data determined core AM fungal and bacterial microbiomes and indicator taxa for plant diversity and +N treatments. We found that plant diversity and +N influenced AM fungal biomass and community structure. Across all plant diversity treatments, +N reduced the biomass of AM fungi and nifH gene abundance by more than 40%. The AM fungal genus Scutellospora was an indicator for +N, with relative abundance significantly greater under +N and in monoculture treatments. Community composition of rhizobacteria was influenced by plant diversity but not by +N. Verrucomicrobia and Proteobacteria were the dominant bacterial phyla in both roots and soils. Our findings provide evidence that soil fertility and plant diversity structure the root and soil microbiome. Optimization of soil communities for switchgrass production must take into account differences among cultivars and their unique responses to shifts in soil fertility.
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Affiliation(s)
- Daniel Revillini
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, United States
- Department of Biology, University of Miami, Coral Gables, FL, United States
- *Correspondence: Daniel Revillini,
| | - Gail W. T. Wilson
- Department of Natural Resource Ecology, Management, Oklahoma State University, Stillwater, OK, United States
| | - R. Michael Miller
- Environmental Science Division, Argonne National Laboratory, Lemont, IL, United States
| | - Ryan Lancione
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, United States
| | - Nancy Collins Johnson
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, United States
- School of Earth, Sustainability, Northern Arizona University, Flagstaff, AZ, United States
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Bickford WA, Goldberg DE, Kowalski KP, Zak DR. Root endophytes and invasiveness: no difference between native and non‐native
Phragmites
in the Great Lakes Region. Ecosphere 2018. [DOI: 10.1002/ecs2.2526] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Wesley A. Bickford
- U.S. Geological Survey—Great Lakes Science Center Ann Arbor Michigan 48105 USA
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan 48109 USA
| | - Deborah E. Goldberg
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan 48109 USA
| | - Kurt P. Kowalski
- U.S. Geological Survey—Great Lakes Science Center Ann Arbor Michigan 48105 USA
- School for Environment and Sustainability University of Michigan Ann Arbor Michigan 48109 USA
| | - Donald R. Zak
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan 48109 USA
- School for Environment and Sustainability University of Michigan Ann Arbor Michigan 48109 USA
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