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Machat R, Pojezdal L, Gebauer J, Matiasovic J, Tesarik R, Minarova H, Hodkovicova N, Faldyna M. Early immune response of two common carp breeds to koi herpesvirus infection. FISH & SHELLFISH IMMUNOLOGY 2022; 128:206-215. [PMID: 35940535 DOI: 10.1016/j.fsi.2022.07.064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Revised: 06/19/2022] [Accepted: 07/20/2022] [Indexed: 06/15/2023]
Abstract
Economic importance of common carp (Cyprinus carpio L.) increases every year. Viral diseases are major threat for carp aquaculture and cause significant economic losses. Koi herpesvirus (KHV) is one of the most serious carp diseases. Current study is focused on confirmation of possible differences in early immune response to KHV depending on level of resistance. Class I interferon signalling, complement cascade and cell-mediated cytotoxicity are hypothesized as major mechanisms of early innate immune response against KHV. Different breeds of common carp show distinct level of resistance to KHV. Two breeds of common carp with completely different susceptibility to KHV were chosen for current research: amur wild carp (AS) as highly resistant and koi carp (KOI) as very susceptible breed. KHV infection caused no mortalities, but the viral load in selected tissues increased during infection. Levels of expressions of chosen genes was examined using qRT-PCR and overall change in protein expression profiles was analysed by mass spectrometry. Significant differences in immune response between AS and KOI were detected mostly at the level of protein expression. Although cell-mediated cytotoxicity showed minimal influence during KHV infection, many immune response parameters related to class I interferon signalling pathway and complement cascade were increased earlier during KHV infection in AS comparing to KOI.
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Affiliation(s)
- Radek Machat
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic; Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic
| | - Lubomir Pojezdal
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic
| | - Jan Gebauer
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic
| | - Jan Matiasovic
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic
| | - Radek Tesarik
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic
| | - Hana Minarova
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic; Department of Ecology & Diseases of Zoo Animals, Game, Fish and Bees, Faculty of Veterinary Hygiene and Ecology, University of Veterinary Sciences, Brno, 612 42, Czech Republic
| | - Nikola Hodkovicova
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic
| | - Martin Faldyna
- Department of Infection Diseases and Preventive Medicine, Veterinary Research Institute, Brno, 621 00, Czech Republic.
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Knudsen SW, Hesselsøe M, Thaulow J, Agersnap S, Hansen BK, Jacobsen MW, Bekkevold D, Jensen SKS, Møller PR, Andersen JH. Monitoring of environmental DNA from nonindigenous species of algae, dinoflagellates and animals in the North East Atlantic. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153093. [PMID: 35038516 DOI: 10.1016/j.scitotenv.2022.153093] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 12/04/2021] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
Monitoring the distribution of marine nonindigenous species is a challenging task. To support this monitoring, we developed and validated the specificity of 12 primer-probe assays for detection of environmental DNA (eDNA) from marine species, all nonindigenous to Europe. The species include sturgeons, a Pacific red algae, oyster thief, a freshwater hydroid from the Black Sea, Chinese mitten crab, Pacific oyster, warty comb jelly, sand gaper, round goby, pink salmon, rainbow trout and North American mud crab. We tested all assays in the laboratory, on DNA extracted from both the target and non-target species to ensure that they only amplified DNA from the intended species. Subsequently, all assays were used to analyse water samples collected at 16 different harbours across two different seasons during 2017. We also included six previously published assays targeting eDNA from goldfish, European carp, two species of dinoflagellates of the genera Karenia and Prorocentrum, two species of the heterokont flagellate genus Pseudochattonella. Conventional monitoring was carried out alongside eDNA sampling but with only one sampling event over the one year. Because eDNA was relatively fast and easy to collect compared to conventional sampling, we sampled eDNA twice during 2017, which showed seasonal changes in the distribution of nonindigenous species. Comparing eDNA levels with salinity gradients did not show any correlation. A significant correlation was observed between number of species detected with conventional monitoring methods and number of species found using eDNA at each location. This supports the use of eDNA for surveillance of the distribution of marine nonindigenous species, where the speed and relative easy sampling in the field combined with fast molecular analysis may provide advantages compared to conventional monitoring methods. Prior validation of assays increases taxonomic precision, and laboratorial setup facilitates analysis of multiple samples simultaneously. The specific eDNA assays presented here can be implemented directly in monitoring programmes across Europe and potentially worldwide to infer a more precise picture of the dynamics in the distribution of marine nonindigenous species.
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Affiliation(s)
- Steen Wilhelm Knudsen
- NIVA Denmark Water Research, Njalsgade 76, DK-2300 Copenhagen, Denmark; Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark.
| | | | - Jens Thaulow
- NIVA Denmark Water Research, Njalsgade 76, DK-2300 Copenhagen, Denmark
| | - Sune Agersnap
- Department of Bioscience, Aarhus University, Ny Munkegade 116, Building 1540, DK-8000 Aarhus, Denmark
| | - Brian Klitgaard Hansen
- Danish Technical University of Denmark, Section for Marine Living Resources, Vejlsøvej 39, DK-8600 Silkeborg, Denmark
| | - Magnus Wulff Jacobsen
- Danish Technical University of Denmark, Section for Marine Living Resources, Vejlsøvej 39, DK-8600 Silkeborg, Denmark
| | - Dorte Bekkevold
- Danish Technical University of Denmark, Section for Marine Living Resources, Vejlsøvej 39, DK-8600 Silkeborg, Denmark
| | | | - Peter Rask Møller
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark; Norwegian College of Fishery Science, UiT Norwegian Arctic University, Tromsø, Norway
| | - Jesper H Andersen
- NIVA Denmark Water Research, Njalsgade 76, DK-2300 Copenhagen, Denmark
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Emmenegger EJ, Bueren EK, Jia P, Hendrix N, Liu H. Comparative virulence of spring viremia of carp virus (SVCV) genotypes in two koi varieties. DISEASES OF AQUATIC ORGANISMS 2022; 148:95-112. [PMID: 35297379 DOI: 10.3354/dao03650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Spring viremia of carp virus (SVCV), is a lethal freshwater pathogen of cyprinid fish, and Cyprinus carpio koi is a primary host species. The virus was initially described in the 1960s after outbreaks occurred in Europe, but a global expansion of SVCV has been ongoing since the late 1990s. Genetic typing of SVCV isolates separates them into 4 genotypes that are correlated with geographic origin: Ia (Asia), Ib and Ic (Eastern Europe), and Id (Central Europe). We compared infectivity and virulence of 8 SVCV strains, including 4 uncharacterized Chinese Ia isolates and representatives of genotypes Ia-d in 2 morphologically distinct varieties of koi: long-fin semi-scaled Beni Kikokuryu koi and short-fin fully scaled Sanke koi. Mortality ranged from 4 to 82% in the Beni Kikokuryu koi and 0 to 94% in the Sanke koi following immersion challenge. Genotype Ia isolates of Asian origin had a wide range in virulence (0-94%). Single isolates representing the European genotypes Ib and Ic were moderately virulent (38-56%). Each virus strain produced similar levels of mortality in both koi breeds, with the exception of the SVCV Id strain that appeared to have both moderate and high virulence phenotypes (60% in Beni Kikokuryu koi vs. 87% in Sanke koi). Overall SVCV strain virulence appeared to be a dominant factor in determining disease outcomes, whereas intraspecies variation, based on koi variety, had less of an impact. This study is the first side-by-side comparison of Chinese SVCV isolates and genotype Ia-d strain virulence in a highly susceptible host.
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Orlova SY, Rastorguev S, Bagno T, Kurnosov D, Nedoluzhko A. Genetic structure of marine and lake forms of Pacific herring Clupea pallasii. PeerJ 2021; 9:e12444. [PMID: 34760402 PMCID: PMC8570158 DOI: 10.7717/peerj.12444] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 10/15/2021] [Indexed: 11/20/2022] Open
Abstract
The Pacific herring (Clupea pallasii) is one of the most important species in the commercial fisheries distributed in the North Pacific Ocean and the northeastern European seas. This teleost has marine and lake ecological forms a long its distribution in the Holarctic. However, the level of genetic differentiation between these two forms is not well known. In the present study, we used ddRAD-sequencing to genotype 54 specimens from twelve wild Pacific herring populations from the Kara Sea and the Russian part of the northwestern Pacific Ocean for unveiling the genetic structure of Pacific herring. We found that the Kara Sea population is significantly distinct from Pacific Ocean populations. It was demonstrated that lake populations of Pacific herring differ from one another as well as from marine specimens. Our results show that fresh and brackish water Pacific herring, which inhabit lakes, can be distinguished as a separate lake ecological form. Moreover, we demonstrate that each observed lake Pacific herring population has its own and unique genetic legacy.
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Affiliation(s)
- Svetlana Yu Orlova
- Russian Federal Research Institute of Fisheries and Oceanography, Moscow, Russia.,Shirshov Institute of Oceanology of Russian Academy of Sciences, Moscow, Russia
| | | | - Tatyana Bagno
- National Research Center "Kurchatov Institute", Moscow, Russia
| | - Denis Kurnosov
- Russian Federal Research Institute of Fisheries and Oceanography, Pacific Branch (TINRO), Vladivostok, Russia
| | - Artem Nedoluzhko
- Shirshov Institute of Oceanology of Russian Academy of Sciences, Moscow, Russia.,Nord University, Bodø, Norway
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