Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation

Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)

Assessing the true lineage diversity in elusive nocturnal organisms is particularly challenging due to their subtle phenotypic variation in diagnostic traits. The cryptic small-eared greater galago (Otolemur garnettii) offers a great opportunity to test if currently recognized subspecies, suggested by discontinuities in coat colour pattern and geographic barriers, represent distinct evolutionary lineages. To answer this question, we conducted the first population-level phylogeographic study of the species, sampling wild specimens from across almost its entire latitudinal range, including the Zanzibar Archipelago. We applied five species-delimitation algorithms to investigate the genetic diversity and distribution pattern of mitochondrial DNA across the geographic range of three out of four subspecies. Our results suggest that far-northern populations of O. g. lasiotis potentially represent an independently evolving lineage, but populations assigned to O. g. garnettii from Zanzibar Island and of O. g panganiensis from mainland Tanzania do not constitute two independent lineages. A dated phylogeny suggests that this northern clade diverged from all remaining samples approximately 4 Mya. Such old divergence age is in line with the split between many galagid species. This northern lineage could potentially represent an incipient species; however, there is not yet enough evidence to support a new taxonomic status for this unique mitochondrial group.

Assessing genomic and ecological differentiation among subspecies of the Rough-footed Mud Turtle, Kinosternon hirtipes

Combining genetic and ecological measures of differentiation can provide compelling evidence for ecological and genetic divergence among lineages. The Rough-footed Mud Turtle, Kinosternon hirtipes, is distributed from the Trans-Pecos region of Texas to the highlands of Central Mexico and contains six described subspecies, five of which are extant. We use ddRAD sequencing and species distribution models to assess levels of ecological and genetic differentiation among these subspecies. We also predict changes in climatically suitable habitat under different climate change scenarios and assess levels of genetic diversity and inbreeding within each lineage. Our results show that there is strong genetic and ecological differentiation among multiple lineages within K. hirtipes, and that this differentiation appears to be the result of vicariance associated with the Trans-Mexican Volcanic Belt. We propose changes to subspecies designations to more accurately reflect the evolutionary relationships among populations and assess threats to each subspecies.

Strong Philopatry, Isolation by Distance, and Local Habitat Have Promoted Genetic Structure in Heermann’s Gull

Philopatry can promote genetic differentiation among populations but remains undescribed in many seabirds. Hence, we explored such associations in Heermann’s Gull. Philopatry was observed monitoring 998 gulls in Rasa Island, while genetic differences were examined in the Cardonosa, Rasa, and Isabel islands using the cytochrome b of 296 gulls. Adults returned repeatedly to its natal valley or to a very close distance from it under different modelled hypotheses. Likewise, the interaction between sex and distance indicated significant male-biased philopatry. Besides, low to high genetic differentiation was observed between the Rasa and Cardonosa islands (ΦST = 0–0.22) (both in the Midriff Islands Region), but higher genetic differentiation against Isabel Island (ΦST > 0.25) (in the Mexican Province region). Consistently, genetic structure among regions was observed using different approaches (AMOVA: ΦCT = 0.49; SAMOVA: FCT = 0.49; and BAPS: K = 2). Similarly, a pattern of isolation by distance (rM = 0.82, p = 0.03), agrees with lower estimates of scaled migration rates between regions than among islands of the same region. Overall, it is suggested that the genetic structure found in Heermann’s Gull has been promoted by physical and behavioral barriers.

Extreme philopatry and genetic diversification at unprecedented scales in a seabird

Effective conservation requires maintenance of the processes underlying species divergence, as well as understanding species' responses to episodic disturbances and long-term change. We explored genetic population structure at a previously unrecognized spatial scale in seabirds, focusing on fine-scale isolation between colonies, and identified two distinct genetic clusters of Barau's Petrels (Pterodroma baraui) on Réunion Island (Indian Ocean) corresponding to the sampled breeding colonies separated by 5 km. This unexpected result was supported by long-term banding and was clearly linked to the species' extreme philopatric tendencies, emphasizing the importance of philopatry as an intrinsic barrier to gene flow. This implies that loss of a single colony could result in the loss of genetic variation, impairing the species' ability to adapt to threats in the long term. We anticipate that these findings will have a pivotal influence on seabird research and population management, focusing attention below the species level of taxonomic organization.

Rodenticide baiting black rats (Rattus rattus) in mangrove habitats

ContextMangroves and intertidal habitats have been identified as particularly challenging environments for bait application within both tropical and temperate environments, because bait applied to areas that are tidally inundated could degrade rapidly or become inaccessible to rats. AimsTo determine rat density, ranging behaviour and probability of detection using different monitoring devices; additionally, to determine the availability (persistence, durability and uptake) of rodenticide baits within tidally inundated mangrove habitats. MethodsThe population biology of black rats (Rattus rattus) was studied in two contrasting mangrove habitats on Europa Island, and spatially explicit mark–recapture studies were performed to estimate densities and activity of rats. A series of bait availability trials was conducted to determine the durability of rodenticide baits on the ground and uptake in the canopy (‘bait bolas’). Key resultsBlack rats were found to be abundant in mangrove, and despite daily tidal inundation, still maintained ranging behaviour consistent with rats in adjacent terrestrial habitats. Larger rodenticide bait blocks remained within tidally inundated habitat throughout tidal cycles and were available and remained palatable to rats for at least three consecutive nights, although strong bait competition occurred with crabs. Bait bolas were available in mangrove canopy exclusively to rats and consumption commenced on the first night. ConclusionsThe results provide evidence that mangrove habitats are an important habitat for rats, but the biology of rats in these habitats does not meaningfully differ from adjacent terrestrial habitats. With the use of larger rodenticide blocks, tidal inundation does not affect bait availability, but crabs remain a major competitor for these baits. Alternatively, the present study revealed that bait bolas limit bait access to rats alone. Development as an aerial eradication technology should be also recommended. ImplicationsThese results provide a proof of concept that eradication of rats from tidally inundated habitats such as mangrove should be possible with only small modifications to current best practice.