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Santos MA, Carromeu-Santos A, Quina AS, Antunes MA, Kristensen TN, Santos M, Matos M, Fragata I, Simões P. Experimental Evolution in a Warming World: The Omics Era. Mol Biol Evol 2024; 41:msae148. [PMID: 39034684 PMCID: PMC11331425 DOI: 10.1093/molbev/msae148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 06/25/2024] [Accepted: 07/12/2024] [Indexed: 07/23/2024] Open
Abstract
A comprehensive understanding of the genetic mechanisms that shape species responses to thermal variation is essential for more accurate predictions of the impacts of climate change on biodiversity. Experimental evolution with high-throughput resequencing approaches (evolve and resequence) is a highly effective tool that has been increasingly employed to elucidate the genetic basis of adaptation. The number of thermal evolve and resequence studies is rising, yet there is a dearth of efforts to integrate this new wealth of knowledge. Here, we review this literature showing how these studies have contributed to increase our understanding on the genetic basis of thermal adaptation. We identify two major trends: highly polygenic basis of thermal adaptation and general lack of consistency in candidate targets of selection between studies. These findings indicate that the adaptive responses to specific environments are rather independent. A review of the literature reveals several gaps in the existing research. Firstly, there is a paucity of studies done with organisms of diverse taxa. Secondly, there is a need to apply more dynamic and ecologically relevant thermal environments. Thirdly, there is a lack of studies that integrate genomic changes with changes in life history and behavioral traits. Addressing these issues would allow a more in-depth understanding of the relationship between genotype and phenotype. We highlight key methodological aspects that can address some of the limitations and omissions identified. These include the need for greater standardization of methodologies and the utilization of new technologies focusing on the integration of genomic and phenotypic variation in the context of thermal adaptation.
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Affiliation(s)
- Marta A Santos
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Ana Carromeu-Santos
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Ana S Quina
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
- Egas Moniz Center for Interdisciplinary Research (CiiEM), Egas Moniz School of Health & Science, Almada, Portugal
| | - Marta A Antunes
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | | | - Mauro Santos
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departament de Genètica i de Microbiologia, Grup de Genòmica, Bioinformàtica i Biologia Evolutiva (GBBE), Universitat Autonòma de Barcelona, Bellaterra, Spain
| | - Margarida Matos
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Inês Fragata
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Pedro Simões
- CE3C—Centre for Ecology, Evolution and Environmental Changes & CHANGE, Global Change and Sustainability Institute, Lisboa, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
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2
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Zimmermann S, Gärtner U, Ferreira GS, Köhler HR, Wharam D. Thermal Impact and the Relevance of Body Size and Activity on the Oxygen Consumption of a Terrestrial Snail, Theba pisana (Helicidae) at High Ambient Temperatures. Animals (Basel) 2024; 14:261. [PMID: 38254430 PMCID: PMC10812721 DOI: 10.3390/ani14020261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 01/10/2024] [Accepted: 01/12/2024] [Indexed: 01/24/2024] Open
Abstract
Metabolism, mainly driven by oxygen consumption, plays a key role in life, as it is one of the main ways to respond to extreme temperatures through internal processes. Theba pisana, a widespread Mediterranean land snail, is exposed to a wide range of ambient temperature. In this species the oxygen consumption was tested as a response variable by multiple regression modelling on the "explanatory" variables shell-free mass, temperature, and relative humidity. Our results show that the oxygen consumption of T. pisana can be well described (73.1%) by these three parameters. In the temperature range from 23 °C to 35 °C the oxygen consumption decreased with increasing temperature. Relative humidity, in the range of 67% to 100%, had the opposite effect: if it increases, oxygen consumption will increase as well. Metabolism is proportional to an individual's mass to the power of the allometric scaling exponent α, which is between 0.62 and 0.77 in the mentioned temperature range. CT scans of shells and gravimetry revealed the shell-free mass to be calculated by multiplying the shell diameter to the third power by 0.2105. Data were compared to metabolic scaling exponents for other snails reported in the literature.
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Affiliation(s)
- Sascha Zimmermann
- Mesoscopic Physics and Nanostructures, Institute of Applied Physics, University of Tübingen, Auf der Morgenstelle 10, D-72076 Tübingen, Germany
- Animal Physiological Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany (H.-R.K.)
| | - Ulrich Gärtner
- Animal Physiological Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany (H.-R.K.)
| | - Gabriel S. Ferreira
- Senckenberg Centre for Human Evolution & Palaeoenvironment (SHEP), Terrestrial Palaeoclimatology, University of Tübingen, Hölderlinstrasse 12, D-72074 Tübingen, Germany
| | - Heinz-R. Köhler
- Animal Physiological Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany (H.-R.K.)
| | - David Wharam
- Mesoscopic Physics and Nanostructures, Institute of Applied Physics, University of Tübingen, Auf der Morgenstelle 10, D-72076 Tübingen, Germany
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Dahirel M, Proux M, Gérard C, Ansart A. Morph‐dependent nematode infection and its association with host movement in the land snail
Cepaea nemoralis
(Mollusca, Gastropoda). J Zool (1987) 2022. [DOI: 10.1111/jzo.13012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- M. Dahirel
- Université Côte d'Azur, INRAE, CNRS, ISA Sophia‐Antipolis France
- Department of Biology Ghent University Ghent Belgium
| | - M. Proux
- Univ Rennes, UR1, CNRS, ECOBIO (Ecosystèmes, Biodiversité, évolution), UMR 6553 Rennes France
| | - C. Gérard
- Univ Rennes, UR1, CNRS, ECOBIO (Ecosystèmes, Biodiversité, évolution), UMR 6553 Rennes France
| | - A. Ansart
- Univ Rennes, UR1, CNRS, ECOBIO (Ecosystèmes, Biodiversité, évolution), UMR 6553 Rennes France
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Lee CT, Huang CW, Hwang CC, Sutcharit C, Jirapatrasilp P. Arboreal snail genus Amphidromus Albers, 1850 of Southeast Asia: Shell polymorphism of Amphidromus cruentatus (Morelet, 1875) revealed by phylogenetic and morphometric analyses. PLoS One 2022; 17:e0272966. [PMID: 36037160 PMCID: PMC9423684 DOI: 10.1371/journal.pone.0272966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 07/19/2022] [Indexed: 11/24/2022] Open
Abstract
Species of colourful arboreal snails of the genus Amphidromus from Southeast Asia commonly exhibit high intraspecific variation in shell morphology. Although highly polymorphic Amphidromus specimens with different colouration have been collected at the same locality and were revealed to possess similar genital organs, there is yet no morphometric or DNA analyses of these different shell morphs. This study is the first to reveal that both striped and stripeless morphs of A. cruentatus from Laos and Vietnam belong to the same mitochondrial (COI and 16S rRNA) lineage. Although the shell colouration between the striped and stripeless morphs is markedly different, morphometric and shell outline-based analyses indicated an overall similarity in shell shape. We also revised the systematics of A. cruentatus, in which we treated similar related species, namely A. eudeli, A. fuscolabris, A. thakhekensis, A. gerberi bolovenensis, A. goldbergi, A. pengzhuoani, A. eichhorsti and A. pankowskiae as junior synonyms of A. cruentatus. Amphidromus daoae, A. anhdaoorum, A. stungtrengensis, A. yangbayensis and A. yenlinhae, which were formerly regarded as junior synonyms, are considered as species different from A. cruentatus based on shell morphology and morphometric analyses. Preliminary phylogenetic analyses also retrieved some Amphidromus species groups as distinct mitochondrial lineages.
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Affiliation(s)
- Chi-Tse Lee
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan
| | - Chih-Wei Huang
- School of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Chung-Chi Hwang
- Department of Life Sciences, National University of Kaohsiung, Kaohsiung, Taiwan
| | - Chirasak Sutcharit
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Parin Jirapatrasilp
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
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Markl G, Ottmann S, Haasis T, Budach D, Krais S, Köhler H. Thermobiological effects of temperature-induced color variations in Aglais urticae (Lepidoptera, Nymphalidae). Ecol Evol 2022; 12:e8992. [PMID: 35784029 PMCID: PMC9188032 DOI: 10.1002/ece3.8992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 05/09/2022] [Accepted: 05/16/2022] [Indexed: 11/25/2022] Open
Abstract
Coloration of animals is important for camouflage, for social behavior, or for physiological fitness. This study investigates the color variation in adults of Aglais urticae obtained on subjecting some pre-imaginal stages to different temperature conditions and their thermobiological consequences. To investigate the evolutionary-ecological interactions of temperature and pigmentation in butterflies, caterpillars, and pupae of the small tortoiseshell, Aglais urticae (Lepidoptera, Nymphalidae), larvae from Central Europe and Scandinavia were reared at temperatures between 7 and 34°C in the laboratory or in the field. After emergence, the intensity of pigmentation of the imagines and their increase in body temperature under defined full-spectrum light irradiation were quantified by image analysis and thermal imaging. At constant conditions, ambient rearing temperature and pigmentation intensity of imagines were negatively and linearly correlated in Central European butterflies, regardless of whether the pupal stage alone or, additionally, the last period of the larval stage was exposed to these conditions: low temperatures induced darker coloration and high temperatures led to lighter individuals. A thermal pulse of a few days alone at the beginning of pupal dormancy led to a similar, albeit weakened, effect. Caterpillars of the Scandinavian subspecies A. urticae polaris, whose pupal dormancy took place under Central European field conditions, developed into strongly pigmented imagines. The thermobiological relevance of more intense pigmentation was shown by significantly higher absorption of light, and thus stronger increased body temperature after 5 min of defined illumination, but this difference ceased after 15 min. Our results show that phenotypic plasticity in wing coloration is adaptive since temperature-induced developmental changes provide thermobiological benefit in adult butterflies. We propose that, in subpolar latitudes, darker coloration likely has a selection advantage favoring individuals with reaction norms gradually shifted to stronger pigmented phenotypes, possibly leading to the establishment of a pigmentation cline.
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Affiliation(s)
- Gregor Markl
- Department of GeosciencesUniversity of TübingenTübingenGermany
| | - Shannon Ottmann
- Animal Physiological Ecology GroupInstitute of Evolution and EcologyUniversity of TübingenTübingenGermany
| | - Tobias Haasis
- Animal Physiological Ecology GroupInstitute of Evolution and EcologyUniversity of TübingenTübingenGermany
| | - Daniela Budach
- Department of GeosciencesUniversity of TübingenTübingenGermany
| | - Stefanie Krais
- Animal Physiological Ecology GroupInstitute of Evolution and EcologyUniversity of TübingenTübingenGermany
| | - Heinz‐R. Köhler
- Animal Physiological Ecology GroupInstitute of Evolution and EcologyUniversity of TübingenTübingenGermany
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Xu Q, Nie H, Yin Z, Zhang Y, Huo Z, Yan X. MiRNA-mRNA Integration Analysis Reveals the Regulatory Roles of MiRNAs in Shell Pigmentation of the Manila clam (Ruditapes philippinarum). MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2021; 23:976-993. [PMID: 34773538 DOI: 10.1007/s10126-021-10080-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 10/14/2021] [Indexed: 06/13/2023]
Abstract
The shell color of the Manila clam (Ruditapes philippinarum) is an economically important trait. We used high-throughput sequencing and transcriptome analysis to study the molecular mechanisms that underlie shell color formation and regulation in this species. We constructed small RNA libraries from mantle tissues from four shell color strains of Manila clam, subjected them to high-throughput sequencing. Notably, the results suggested that a number of pigment-associated genes including Mitf, HERC2, were negatively regulated by nvi-miR-2a, tgu-miR-133-3p, respectively. They might be involved in melanin formation via the activation of the melanogenesis pathway. And aae-miR-71-5p and dme-miR-7-5p linked to shell formation-related genes such as Calmodulin and IMSP3 were considered to participate in the calcium signaling pathway. We then used quantitative PCR to verify the candidate miRNAs and target genes in different shell color groups. Our results indicated that miR-7, miR-71, and miR-133 may regulate target mRNAs to participate in shell color pigmentation. These results provide the foundation to further characterize miRNA effects on the regulation of shell color and have significant implications for the breeding of new varieties of clams.
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Affiliation(s)
- Qiaoyue Xu
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China
| | - Hongtao Nie
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China.
| | - Zhihui Yin
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China
| | - Yanming Zhang
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China
| | - Zhongming Huo
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China
| | - Xiwu Yan
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian, 116023, China.
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Multiple Introductions of the Pestiferous Land Snail Theba pisana (Müller, 1774) (Gastropoda: Helicidae) in Southern California. INSECTS 2021; 12:insects12080662. [PMID: 34442227 PMCID: PMC8396441 DOI: 10.3390/insects12080662] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 07/13/2021] [Accepted: 07/13/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary In Southern California, USA, the introduced white Italian land snail, Theba pisana, is prolific and locally pestiferous. To better understand its diversity and infer its parent population(s), we collected it from Los Angeles and San Diego counties and generated and analyzed gene sequence data (CO1, 16S, ITS2) that we compared between localities and to T. pisana CO1 barcodes from around the world. We also compared the morphology of the jaw, radula, and reproductive systems in T. pisana from Los Angeles and San Diego Counties. We found that T. pisana living at several sites in Los Angeles County in 2019–2020 had a single origin and were most similar in CO1 DNA sequence, based on available data, to specimens from Malta. Theba pisana collected from one site in San Diego County differed from Los Angeles T. pisana and were most similar in CO1 barcode sequence to specimens from Morocco. Jaw and mucous gland morphology also differed between Los Angeles and San Diego populations, but it is unclear if these traits are unique to lineages of T. pisana or if they change during a snail’s lifetime. We discuss how Los Angeles and San Diego T. pisana lineages may have arrived in Southern California and anticipate that the genetic data and morphological observations generated by this study will inform future studies of T. pisana where it is native and introduced. Abstract The terrestrial land snail Theba pisana is circum-Mediterranean in native range and widely introduced and pestiferous in regions around the world. In California, USA, T. pisana has been recorded intermittently since 1914, but its source population(s) are unknown, and no morphological or molecular analyses within or between California populations have been published. Therefore, we compared molecular data (CO1, 16S, ITS2) and internal morphology (jaw, radula, reproductive system) in T. pisana collected from Los Angeles and San Diego counties in 2019–2020. DNA barcode (CO1 mtDNA) analysis revealed that T. pisana from Los Angeles County was most similar to T. pisana from the Mediterranean island of Malta, and northern San Diego County-collected specimens were most similar to T. pisana from Morocco. Morphology of the jaw and mucous glands also differed between Los Angeles and San Diego populations, but it is unclear if traits are lineage-specific or artifacts of ontogeny. Several pathways of introduction into Southern California are possible for this species, but evidence for intentional vs. accidental introduction of present populations is lacking. Subsequent investigation(s) could use the data generated herein to assess the provenance of T. pisana elsewhere in California and/or worldwide and inform analyses of reproductive biology and systematics in this widespread species.
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Saenko SV, Schilthuizen M. Evo-devo of shell colour in gastropods and bivalves. Curr Opin Genet Dev 2021; 69:1-5. [PMID: 33388521 DOI: 10.1016/j.gde.2020.11.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 11/17/2020] [Accepted: 11/23/2020] [Indexed: 11/30/2022]
Abstract
Recent technical innovations are revealing surprising patterns in mollusc shell pigmentation, such as an unexpectedly modest role for melanins and rapid divergences in the mix of pigments used to achieve similar colour patterns. The elucidation of the molecular genetic basis of shell pigmentation has been slow, probably because of the high genome complexity of gastropods and bivalves. Recent work within the old field of evolutionary ecology of shell pigmentation allows a greater role for the analysis of large-geographic-scale patterns (sometimes employing citizen-science data), as well as experimental field studies. However, the field remains dominated by land snails as model organisms, while colour pattern evolution in marine gastropods and bivalves, particularly those not exposed to visual predators, remains mysterious.
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Affiliation(s)
- Suzanne V Saenko
- Naturalis Biodiversity Center, Darwinweg 2, 2333CR Leiden, The Netherlands; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333BE Leiden, The Netherlands
| | - Menno Schilthuizen
- Naturalis Biodiversity Center, Darwinweg 2, 2333CR Leiden, The Netherlands; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333BE Leiden, The Netherlands.
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