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Cossette ML, Stewart DT, Haghani A, Zoller JA, Shafer ABA, Horvath S. Epigenetics and island-mainland divergence in an insectivorous small mammal. Mol Ecol 2023; 32:152-166. [PMID: 36226847 DOI: 10.1111/mec.16735] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 09/20/2022] [Accepted: 09/28/2022] [Indexed: 12/29/2022]
Abstract
Geographically isolated populations, specifically island-mainland counterparts, tend to exhibit phenotypic variation in many species. The so-called island syndrome occurs when different environmental pressures lead to insular divergence from mainland populations. This phenomenon can be seen in an island population of Nova Scotia masked shrews (Sorex cinereus), which have developed a specialized feeding habit and digestive enzyme compared to their mainland counterparts. Epigenetic modifications, such as DNA methylation (DNAm), can impact phenotypes by altering gene expression without changing the DNA sequence. Here, we used a de novo masked shrew genome assembly and a mammalian methylation array profiling 37 thousand conserved CpGs to investigate morphological and DNA methylation patterns between island and mainland populations. Island shrews were morphologically and epigenetically different than their mainland counterparts, exhibiting a smaller body size. A gene ontology enrichment analyses of differentially methylated CpGs implicated developmental and digestive system related pathways. Based on our shrew epigenetic clock, island shrews might also be aging faster than their mainland counterparts. This study provides novel insight on phenotypic and epigenetic divergence in island-mainland mammal populations and suggests an underlying role of methylation in island-mainland divergence.
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Affiliation(s)
- Marie-Laurence Cossette
- Department of Environmental Life Sciences Graduate Program, Trent University, Peterborough, Ontario, Canada
| | - Donald T Stewart
- Department of Biology, Acadia University, Wolfville, Nova Scotia, Canada
| | - Amin Haghani
- Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California, USA
| | - Joseph A Zoller
- Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, California, USA
| | - Aaron B A Shafer
- Department of Environmental Life Sciences Graduate Program, Trent University, Peterborough, Ontario, Canada
- Department of Forensic Science, Trent University, Peterborough, Ontario, Canada
| | - Steve Horvath
- Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California, USA
- Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, California, USA
- Altos Labs, San Diego, California, USA
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2
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Taylor JRE, Muturi M, Lázaro J, Zub K, Dechmann DKN. Fifty years of data show the effects of climate on overall skull size and the extent of seasonal reversible skull size changes (Dehnel's phenomenon) in the common shrew. Ecol Evol 2022; 12:e9447. [PMID: 36311390 PMCID: PMC9609440 DOI: 10.1002/ece3.9447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 09/22/2022] [Accepted: 09/30/2022] [Indexed: 11/18/2022] Open
Abstract
Global climate change affects many aspects of biology and has been shown to cause body size changes in animals. However, suitable datasets allowing the analysis of long‐term relationships between body size, climate, and its effects are rare. The size of the skull is often used as a proxy for overall body size. Skull size does not change much in fully grown vertebrates; however, some high‐metabolic small mammals shrink in winter and regrow in spring, including their skull and brain. This is thought to be a winter adaptation, as a smaller brain size reduces energy requirements. Climate could thus affect not only the overall size but also the pattern of the size change, that is, Dehnel's phenomenon, in these animals. We assessed the impact of the changes in climate on the overall skull size and the different stages of Dehnel's phenomenon in skulls of the common shrew, Sorex araneus, collected over 50 years in the Białowieża Forest, E Poland. Overall skull size decreased, along with increasing temperatures and decreasing soil moisture, which affected the availability of the shrews' main food source, earthworms. The skulls of males were larger than those of females, but the degree of the decrease in size did not differ between sexes. The magnitude of Dehnel's phenomenon increased over time, indicating an increasing selection pressure on animals in winter. Overall, climate clearly affected the common shrew's overall size as well as its seasonal size changes. With the current acceleration in climate change, the effects on the populations of this cold‐adapted species may be quite severe in a large part of its distribution range.
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Affiliation(s)
| | - Marion Muturi
- Department of MigrationMax Planck Institute of Animal BehaviorRadolfzellGermany,Department of BiologyUniversity of KonstanzKonstanzGermany
| | - Javier Lázaro
- Department of MigrationMax Planck Institute of Animal BehaviorRadolfzellGermany,Department of BiologyUniversity of KonstanzKonstanzGermany
| | - Karol Zub
- Mammal Research InstitutePolish Academy of SciencesBiałowieżaPoland
| | - Dina K. N. Dechmann
- Department of MigrationMax Planck Institute of Animal BehaviorRadolfzellGermany,Department of BiologyUniversity of KonstanzKonstanzGermany
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Nováková L, Lázaro J, Muturi M, Dullin C, Dechmann DKN. Winter conditions, not resource availability alone, may drive reversible seasonal skull size changes in moles. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220652. [PMID: 36133148 PMCID: PMC9449468 DOI: 10.1098/rsos.220652] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/15/2022] [Indexed: 05/30/2023]
Abstract
Seasonal changes in the environment can lead to astonishing adaptations. A few small mammals with exceptionally high metabolisms have evolved a particularly extreme strategy: they shrink before winter and regrow in spring, including changes of greater than 20% in skull and brain size. Whether this process is an adaptation to seasonal climates, resource availability or both remains unclear. We show that European moles (Talpa europaea) also decrease skull size in winter. As resources for closely related Iberian moles (Talpa occidentalis) are lowest in summer, we predicted they should shift the timing of size changes. Instead, they do not change size at all. We conclude that in moles, seasonal decrease and regrowth of skull size is an adaptation to winter climate and not to a changing resource landscape alone. We not only describe this phenomenon in yet another taxon, but take an important step towards a better understanding of this enigmatic cycle.
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Affiliation(s)
- Lucie Nováková
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, Radolfzell 78315, Germany
- Department of Zoology, Charles University, Viničná 7, Prague 128 00, Czech Republic
| | - Javier Lázaro
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, Radolfzell 78315, Germany
- Javier Lázaro Scientific and Wildlife Illustration, Gere Sopra 17, Noasca 10080, Italy
| | - Marion Muturi
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, Radolfzell 78315, Germany
| | - Christian Dullin
- Department for Diagnostic and Interventional Radiology, University Medical Center Goettingen, Robert-Koch-Straße 40, Goettingen 37075, Germany
- Department Translational Molecular Imaging, Max Planck Institute for Multidisciplinary Sciences, Herman-Rein-Straße 3, Goettingen 37075, Germany
- Department for Diagnostic and Interventional Radiology, University Hospital Heidelberg, Im Neuenheimer Feld 420, Heidelberg 69120, Germany
| | - Dina K. N. Dechmann
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, Radolfzell 78315, Germany
- Department of Biology, University of Konstanz, Universitätsstraße 10, 78464 Konstanz, Germany
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Dissimilar use of an external heat source for thermoregulation by shrews from different geographic regions. J Therm Biol 2022; 104:103193. [DOI: 10.1016/j.jtherbio.2022.103193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 01/19/2022] [Accepted: 01/21/2022] [Indexed: 11/18/2022]
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Myakushko S. Shrinkage of body size in rodents as a strategy of populations under anthropogenic conditions (results of 50 years of study of rodent populations). THERIOLOGIA UKRAINICA 2021. [DOI: 10.15407/tu2214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Based on results of 50 years of continuous observations of populations of the pine vole (Microtus subterraneus de Selys-Longchamps, 1836) and yellow-necked wood mouse (Sylvaemus flavicollis Melchior, 1834), the phenomenon of reducing body size of individuals was revealed, particularly a significant reduction in body dimensions and body mass. The research was conducted at the Kaniv Nature Reserve covering various stages of the local ecosystem's existence under anthropogenic impact. Four cycles of density dynamics of two populations are chosen for comparison of their characteristics. The first three cycles correspond to qualitatively different periods in the existence of the protected ecosystem and populations of the studied species, whereas the last cycle reflects the current situation. It has been established that the tendency to decrease body dimensions is also characteristic for other rodent species, its manifestations are observed for 35 years, and the scale gradually increases. By fatness indexes, individuals of the pine vole on average lose 23.3% and yellow-necked wood mice lose 16.7% of the former values. It was shown that the level of reduce in exterior parameters is always greater in females than in males, and in the group of breeding adults it can reach 32%. It has been found that the phenomenon also applies to juveniles, whose fatness decreases by an average of 21%. The phenomenon occurs against the background of violations of various aspects of population dynamics, which allows it to be associated with anthropogenic changes in the environment. It is suggested that shrinking can be realized by various mechanisms. First, as a result of mortality, the largest individuals and reproductive females with their greatest energy needs fall out of the population, and, second, the growth and weight gain of young animals is slower. As a result, the decrease in external parameters of individuals reduces their specific energy needs and allows them to better survive under adverse conditions. From these points of view, reducing body dimensions can be considered as a specific population strategy to maintain ecological balance.
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Мyakushko SA. The phenomenon of the shrinking size of bank vole (Myodes glareolus) in an anthropogenic environment (experience of 50 years of observations). BIOSYSTEMS DIVERSITY 2021. [DOI: 10.15421/012126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Fifty years of continuous monitoring of the bank vole population (Myodes glareolus Schreber, 1780) revealed the phenomenon of shrinking body size of individuals, manifesting in significant reduction in their regular size and mass parameters. Field observations were carried out in the Kaniv Nature Reserve (Cherkasy region, Ukraine) during the first half of summer every year. In the forest biotopes of the reserve, this species is dominant in the group of rodents. The research period covered various stages of the existence of the protected ecosystem. Its small area, location ina densely populated region of Ukraine and interaction with neighboring territories which are involved in economic activities have always caused anthropogenic pressure on the protected area. Its nature and intensity determined the changes in the protection regime and the loss of reserve status in 1951–1968. Later, the territory of the reserve experienced increasing technogenic pressure accompanied by radioactive contamination. In this work, to compare their characteristics, four complete cycles of the density dynamics of the bank vole population (from depression to depression) were selected, the duration of which was 4–5 years. The first three cycles correspond to qualitatively different periods in the existence of the ecosystem and the population of the studied species, and the last one corresponds to the relatively current situation. Over the recent 30 years, the size and mass parameters of individuals of bank voles have deсreased, - this phenomenon was called shrinking. The process was also observed to tend towards consistent increase in scale. Differentiated analysis shows that in different sex and functional groups of animals, the decrease in exterior parameters can reach 30.3%. Shrinking is especially notable in the group of adult females that are actively involved in reproduction (compared to the second cycle, considered as the control, the decrease in parameters among these is 33.2%). Juveniles of this sex lost 31.8% of their fatness. Besides, in the population of voles, the proportion of large-size individuals was significantly reduced. The group of animals that overwintered significantly reduced its representation, and its existing representatives had much smaller exterior parameters. The studies found that the shrinking process is stable over time, which does not allow it to be considered a random phenomenon or an artifact of research. This phenomenon has no correlation with the amount or availability of food. It occurs against the background of numerous changes in various aspects of population dynamics, which gives grounds to associate it with anthropogenic changes in the environment. Shrinking is believed to be realized through various mechanisms. Firstly, as a result of mortality, the largest individuals and reproducing females with the greatest energy needs disappear from the population, and secondly, the growth and weight gain of young animals is slower. As a result, decrease in the size and mass parameters of individuals reduces their specific energy needs and allows the population to bring their requirements in correspondance with the capability of the environment to support a certain number of resource consumers. An analogy was drawn with the Dehnel’s phenomenon, described for shrews of the Sorex genus, whose body size and weight decrease is an element of preparation for experiencing adverse winter conditions. Based on similar concepts, the shrinking of its elements can be considered as a specific population strategy to maintain the ecological balance.
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Bartkowska K, Turlejski K, Tepper B, Rychlik L, Vogel P, Djavadian R. Effects of Brain Size on Adult Neurogenesis in Shrews. Int J Mol Sci 2021; 22:7664. [PMID: 34299282 PMCID: PMC8303847 DOI: 10.3390/ijms22147664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 07/14/2021] [Accepted: 07/14/2021] [Indexed: 01/02/2023] Open
Abstract
Shrews are small animals found in many different habitats. Like other mammals, adult neurogenesis occurs in the subventricular zone of the lateral ventricle (SVZ) and the dentate gyrus (DG) of the hippocampal formation. We asked whether the number of new generated cells in shrews depends on their brain size. We examined Crocidura russula and Neomys fodiens, weighing 10-22 g, and Crocidura olivieri and Suncus murinus that weigh three times more. We found that the density of proliferated cells in the SVZ was approximately at the same level in all species. These cells migrated from the SVZ through the rostral migratory stream to the olfactory bulb (OB). In this pathway, a low level of neurogenesis occurred in C. olivieri compared to three other species of shrews. In the DG, the rate of adult neurogenesis was regulated differently. Specifically, the lowest density of newly generated neurons was observed in C. russula, which had a substantial number of new neurons in the OB compared with C. olivieri. We suggest that the number of newly generated neurons in an adult shrew's brain is independent of the brain size, and molecular mechanisms of neurogenesis appeared to be different in two neurogenic structures.
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Affiliation(s)
- Katarzyna Bartkowska
- Nencki Institute of Experimental Biology Polish Academy of Sciences, 02-093 Warsaw, Poland; (K.B.); (B.T.)
| | - Krzysztof Turlejski
- Faculty of Biology and Environmental Sciences, Cardinal Stefan Wyszynski University in Warsaw, 01-938 Warsaw, Poland;
| | - Beata Tepper
- Nencki Institute of Experimental Biology Polish Academy of Sciences, 02-093 Warsaw, Poland; (K.B.); (B.T.)
| | - Leszek Rychlik
- Department of Systematic Zoology, Institute of Environmental Biology, Adam Mickiewicz University, 61-712 Poznan, Poland;
| | - Peter Vogel
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland;
| | - Ruzanna Djavadian
- Nencki Institute of Experimental Biology Polish Academy of Sciences, 02-093 Warsaw, Poland; (K.B.); (B.T.)
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Abstract
Lázaro and Dechmann explain how some mammals that live through harsh winters exhibit seasonal shrinkage of the brain and skull, a process called Dehnel's phenomenon, which helps to spare energy during times of food shortage and high energetic demands.
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Affiliation(s)
- Javier Lázaro
- Max Planck Institute of Animal Behavior, Radolfzell, Germany; Department of Biology, University of Konstanz, Konstanz, Germany.
| | - Dina K N Dechmann
- Max Planck Institute of Animal Behavior, Radolfzell, Germany; Department of Biology, University of Konstanz, Konstanz, Germany
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