High-throughput sequencing outperforms traditional morphological methods in Blue Catfish diet analysis and reveals novel insights into diet ecology

Physiologically-informed predictions of climate warming effects on native and non-native populations of blue catfish

Blue catfish Ictalurus furcatus has been widely introduced throughout the United States to enhance recreational fisheries. Its success in both its native and non-native range, especially in the context of climate change, will be influenced by its thermal performance. We conducted a laboratory experiment to investigate the responses of wild-captured, subadult blue catfish to temperatures ranging from 7 °C to 38 °C. Blue catfish had relatively low standard metabolic rates, indicating low energetic demands, and hence an ability to survive well even during low-food conditions. Metabolic scope and food consumption rate increased with temperature, with metabolic scope peaking at 29.1 °C, and consumption rate peaking at 32 °C. Body condition remained high up to 32 °C, but decreased drastically thereafter, suggesting limitations in maintaining metabolism through food consumption at temperatures >32 °C; blue catfish cannot survive in such habitats indefinitely. Yet, many fish were able to survive temperatures as high as 38 °C for 5 days, suggesting that acute and occasionally chronic heat waves will not limit this species. Using these results, we also predicted the performance of blue catfish under prevailing conditions and under climate warming at seven locations throughout their current range in the U.S. We found that some blue catfish populations in southern and southeastern areas will likely experience temperatures above the optimal temperature for extended periods due to climate change, thus limiting potential habitat availability for this species. But, many non-native populations, especially those in northern areas such as Idaho, North Dakota, and northern California, may benefit from the expected warmer temperatures during spring and fall.

High-throughput sequencing and fatty acid profile analyses of the Black Amur bream (Megalobrama terminalis) reveal variation in dietary niche associated with geographic segregation

Fish dietary niche is a core focus, and it reflects the diversity of resources, habitats, or environments occupied by a species. However, whether geographic segregation among different populations triggers dietary diversification and concomitant fish niche shift remains unknown. In the present study, we selected the Black Amur bream (Megalobrama terminalis) is a migratory fish species that plays an important role in the material transfer and energy cycling of river ecosystems, inhabiting southern China drainage with multiple geographic populations. Here, we utilized the combined analyses of 18S rDNA high-throughput sequencing in fish gut contents and fatty acid (FA) in muscle tissues to evaluate potential spatial patterns of habitat and resource use for M. terminalis in three rivers of southern China. Our results showed that prey items of the Xijiang (XR) population (Pearl River) exhibited the highest species diversity and richness among the three geographic populations. Moreover, diet composition of M. terminalis was affected by spatial differences associated with geographic segregation. Analyses of FA biomarkers indicated that the highest levels of C16:0, C18:3n-3, and C18:2n-6c were found in Wanquan (WS) population (Wanquan River). The XR population exhibited a distinct FA profile characterized by higher amounts of arachidonic acid (ARA) and docosahexaenoic acid (DHA). The Moyang (MY) population (Moyang River) acted as the linkage between WS and XR populations and consisted of middle levels of saturated FAs (SFAs) and polyunsaturated FAs (PUFAs). The XR population displayed a greater FA niche width compared with WS population. Furthermore, we observed a close positive relationship between the niche width and α-diversity indices of dietary resources for FA proflies. Our study provides valued information to develop different conservation strategies among different populations and improve fisheries management for M. terminalis and other endemic species in local rivers.

Application of high-throughput sequencing to analyze the diet of black croaker (Atrobucca nibe) in southern coastal waters of Zhejiang

This study investigated the feeding habits of black croaker (Atrobucca nibe) to fully understand its role in the food web in southern coastal waters of Zhejiang, China. In total, 225 black croakers were collected in a bottom trawl survey, of which 195 were used for the stomach contents analysis and 30 for high-throughput sequencing (HTS). Both approaches showed that the main prey was shrimp, with Alpheus japonicus being the most predominant. In addition, black croaker also fed on other benthic species, suggesting that it was a demersal predator. Feeding intensity also varied with black croaker body length, as did prey preference, from small-sized species to larger species with increases in fish size; in addition, prey species were more diverse in the large-bodied prey group. Canonical correspondence analysis indicated that the feeding habit of black croaker was most significantly correlated with temperature and dissolved oxygen. HTS was shown to be a feasible high precision semi-quantitative analytical approach, although it must be combined with morphological methods to obtain more complete feeding data; thus, it could provide an effective scientific basis for feeding ecology studies of marine organisms.

Dietary Variation Is Driven by Landscape Heterogeneity in an Insular Omnivorous Endemic Lizard, Revealed by DNA Metabarcoding

Living on islands entails numerous challenges for animals, among which population density approaching the carrying capacity of trophic resources stands out. To overcome this limitation, many insular lizards can supplement their insectivorous diet with increasing portions of plant material. The Madeira wall lizard, Teira dugesii, is a medium-sized lacertid, endemic to the Madeira and Selvagens archipelagos. As common in this family, adults are sexually dimorphic with males being bigger than females. Previous dietary studies on morphological scatology identified a higher proportion of plant over animal prey items, changing according to the location and sex. Here, we used DNA metabarcoding to examine the diet of this lizard species quantifying it at a higher taxonomical resolution and enhancing the detection of soft-body prey that often go undetected in morphology-based studies. In a sample of 151 faecal samples from eight populations including different habitats and altitudes in Madeira, we identified 289 prey items belonging to eight animal and three plant Classes, encompassing 58 distinct orders and 140 families. Of these, 63 were identified up to the species level. The results support a strong trend towards herbivory in this species with plants representing almost 74% of the diet occurrences in contrast to the 26% of animal prey. Remarkably, the plant fraction of the diet remained stable across localities but varied with size and mass in males. As males grew bigger and heavier, they significantly increased their plant matter intake. Likely, larger bodies and abdomens allowed allocating longer and more complex digestive tracts harbouring intestinal flora to better decompose plant organic compounds. This allowed heavier animals to have a richer diet regime. However, diet richness and composition were not affected by either sex or size, while the locality had a significant effect on both diet components likely in response to local variation in prey availability. By including an increasing plant fraction into a primarily insectivorous diet, this insular lizard has not only enlarged its trophic niche but is also able to exploit more efficiently the highly variable resources provided by insular environments.

Trophic interactions of an invasive gecko in an endemic-rich oceanic island: Insights using DNA metabarcoding

Understanding the trophic interactions of introduced predators is key for evidence-based management of biological invasions. This is particularly important in oceanic islands, where predator-prey networks often include numerous endemic and range-restricted species. Geckos are successful island colonizers and in recent years numerous species have established populations in a wide array of oceanic islands. One such species is the Moorish gecko (Tarentola mauritanica), which has colonized multiple islands across the Mediterranean basin, Caribbean and Macaronesia. The species was first reported in Madeira Island in 1993 and over the last 30 years has colonized most of the islands' southern coast and expanded to the nearby island of Porto Santo. Here, we used DNA metabarcoding to provide the first insights into the diet of this successful colonizer in its introduced range. The species' diet was mainly composed of ground-dwelling arthropods belonging to the families Porcellionidae (Isopoda), Julidae (Diplopoda) and Formicidae (Hymenoptera). The diet richness and composition were not affected by neither sex nor size of adult geckos, instead they both change across populations. However, trophic niche-width differed among size classes, with smaller geckos feeding on a wider range of prey. We identified over 160 different Operational Taxonomic Units in the diet of T. mauritanica, with 21.6% of them belonging to introduced invertebrates and 13.6% to native species. Native prey taxa included the endemic Madeira wall lizard (Teira dugesii), the sole native reptile to Madeira. We also detected several agricultural pests and disease vectors in the diet of this exotic predator, and 19 taxa identified as prey had not yet been recorded to Madeira. Of these, several are serious agricultural pests, highlighting how this introduced gecko can be used as a natural sampler, in particular for the early detection of invasive arthropod pests. This study emphasizes the importance of trophic studies for monitoring the impacts of introduced predators in fragile insular systems.

The gender-specific impact of starvation on mitotypes diversity in adults of Drosophila melanogaster

In animals, starvation can increase the level of reactive oxygen species (ROS) in some tissues. Mitochondrial DNA (mtDNA) is more vulnerable to being attacked by ROS due to the lack of histone protection, leading to oxidative damage. However, whether starvation is associated with the genetic diversity of mtDNA remains unclear. Here, by using adult individuals of Drosophila melanogaster under three different feeding treatments (starvation, with the provision of only water, and normal feeding), based on the high-throughput sequencing results of the PCR amplicons of the partial sequences of the mitochondrial gene cytochrome c oxidase subunit I (mt-cox1), no significant difference in the mean number of mitochondrial haplotypes and the mean genetic distance of haplotypes within individuals were identified between the three treatment groups. Coupled with the low proportion of heterogeneous mt-cox1 sequences within each individual, it suggested that starvation had a limited impact on mitotype genetic diversity and mitochondrial function. Nevertheless, starvation could significantly increase the sequence number of haplotypes containing specific mutations, and for males with higher levels of mitochondrial heteroplasmy than females in the normal feeding group, starvation could further increase their mitochondrial heteroplasmy.