The functional role and diversity of soil nematodes are stronger at high elevation in the lesser Himalayan Mountain ranges

Distribution pattern of soil nematode communities along an elevational gradient in arid and semi-arid mountains of Northwest China

Soil nematodes are the most abundant soil metazoans, occupying multiple trophic levels in the soil food web and playing an important role in soil function. Research on the biogeographic distribution patterns of soil nematode communities and their drivers has received greater attention. However, the distribution characteristics of soil nematode communities along the elevational gradient in the arid and semi-arid regions of Northwest China remain unclear. In this study, four elevational gradients (1750-1900, 1900-2100, 2100-2350 and 2350-2560 m) were established on Luoshan Mountain, Ningxia, an arid and semi-arid region in Northwest China, and soil nematodes in the soil layers of 0-10, 10-20 and 20-40 cm were investigated using the improved Baermann funnel method. The results revealed a monotonically decreasing trend in the total number of soil nematodes along the elevational gradient and soil layer depth, decreasing by 63.32% to 79.94% and 73.59% to 86.90%, respectively, while the interactions were not obvious. A total of 1487 soil nematodes belonging to 27 families and 32 genera were identified across the elevational gradient, with Helicotylenchus as the dominant genus, accounting for 10.43% of the total number of nematodes, and bacterivore nematodes as the main trophic groups, accounting for 32.39% to 52.55% of the relative abundance at each elevation, which increased with increasing elevation. Soil nematode community diversity, richness and maturity indices were relatively low at high elevation and decreased by 44.62%, 48% and 54.74%, respectively, with increasing soil layer depth at high elevations. Compared to low elevations, high-elevation soils experienced greater disturbance, reduced structural complexity and nutrient enrichment of the soil food web, and a shift in soil organic matter decomposition from bacterial to fungal pathways as elevation increased. Finally, redundancy analysis showed that soil pH, bulk density, soil moisture, soil organic carbon, available nitrogen, available phosphorus and available potassium were the main soil factors affecting the composition of soil nematode communities, which well explained the differences in nematode communities at different elevations and soil depths. This study can be used as basic information for further research on soil biota in this mountainous region, expanding our further understanding of the spatial ecology of soil nematodes in the arid and semi-arid mountain ecosystems.

The Bacterial Gq Signal Transduction Inhibitor FR900359 Impairs Soil-Associated Nematodes

The cyclic depsipeptide FR900359 (FR) is derived from the soil bacterium Chromobacterium vaccinii and known to bind Gq proteins of mammals and insects, thereby abolishing the signal transduction of their Gq protein-coupled receptors, a process that leads to severe physiological consequences. Due to their highly conserved structure, Gq family of proteins are a superior ecological target for FR producing organisms, resulting in a defense towards a broad range of harmful organisms. Here, we focus on the question whether bacteria like C. vaccinii are important factors in soil in that their secondary metabolites impair, e.g., plant harming organisms like nematodes. We prove that the Gq inhibitor FR is produced under soil-like conditions. Furthermore, FR inhibits heterologously expressed Gαq proteins of the nematodes Caenorhabditis elegans and Heterodera schachtii in the micromolar range. Additionally, in vivo experiments with C. elegans and the plant parasitic cyst nematode H. schachtii demonstrated that FR reduces locomotion of C. elegans and H. schachtii. Finally, egg-laying of C. elegans and hatching of juvenile stage 2 of H. schachtii from its cysts is inhibited by FR, suggesting that FR might reduce nematode dispersion and proliferation. This study supports the idea that C. vaccinii and its excreted metabolome in the soil might contribute to an ecological equilibrium, maintaining and establishing the successful growth of plants.

Nematode biomass changes along an elevational gradient are trophic group dependent but independent of body size

Aboveground, large and higher trophic-level organisms often respond more strongly to environmental changes than small and lower trophic-level organisms. However, whether this trophic or size-dependent sensitivity also applies to the most abundant animals, microscopic soil-borne nematodes, remains largely unknown. Here, we sampled an altitudinal transect across the Tibetan Plateau and applied a community-weighted mean (CWM) approach to test how differences in climatic and edaphic properties affect nematode CWM biomass at the level of community, trophic group and taxon mean biomass within trophic groups. We found that climatic and edaphic properties, particularly soil water-related properties, positively affected nematode CWM biomass, with no overall impact of altitude on nematode CWM biomass. Higher trophic-level omnivorous and predatory nematodes responded more strongly to climatic and edaphic properties, particularly to temperature, soil pH, and soil water content than lower trophic-level bacterivorous and fungivorous nematodes. However, these differences were likely not (only) driven by size, as we did not observe significant interactions between climatic and edaphic properties and mean biomasses within trophic groups. Together, our research implies a stronger, size-independent trophic sensitivity of higher trophic-level nematodes compared with lower trophic-level ones. Therefore, our findings provide new insights into the mechanisms underlying nematode body size structure in alpine grasslands and highlight that traits independent of size need to be found to explain increased sensitivity of higher trophic-level nematodes to climatic and edaphic properties, which might affect soil functioning.

Food web structure of nematode communities in irrigated rice fields

Nematodes are a key component of the soil food web and they play an important role in the provision of ecosystem services. Rice cultivation in Mwea, Kenya involves the intensive use of fertilizers and pesticides which may affect the complexity of the nematode-based soil food web. This study examined the nematode diversity and food web structure in irrigated rice fields in Nyangati and Tebere in Mwea, Kirinyaga County, Kenya. Nematodes were identified up to the genus level and soil physico-chemical properties were also determined. Aphelenchoides and Longidorus occurred in significantly greater proportions in Tebere, while in Nyangati there was a high abundance of Helicotylenchus. Aphelenchoides was positively correlated to soil electrical conductivity. From additive diversity partitioning of genus richness, the α and β components contributed 33.7% and 66.3% of the γ diversity, respectively. For Shannon and Simpson diversity indices, the largest contribution to overall diversity was from α component. Soil food web indices were similar across the two regions. Channel and basal indices were below 30% while Enrichment (EI) and Structure (SI) indices were above 50%. There was no variation in metabolic footprints except for the fungivore footprint which was significantly higher in Tebere. Based on the EI and SI, the soil food web in paddy rice fields in Mwea was structured and enriched with moderate disturbance. Due to the high prevalence of economically damaging parasitic nematodes in the rice fields, appropriate management schemes that enhance specific components of the soil food web and increase the suppressive ability of soil against plant-parasitic nematodes should be implemented.