A new index for quantifying the ornamentational complexity of animals with shells

Automatic identification and morphological comparison of bivalve and brachiopod fossils based on deep learning

Fossil identification is an essential and fundamental task for conducting palaeontological research. Because the manual identification of fossils requires extensive experience and is time-consuming, automatic identification methods are proposed. However, these studies are limited to a few or dozens of species, which is hardly adequate for the needs of research. This study enabled the automatic identification of hundreds of species based on a newly established fossil dataset. An available "bivalve and brachiopod fossil image dataset" (BBFID, containing >16,000 "image-label" data pairs, taxonomic determination completed) was created. The bivalves and brachiopods contained in BBFID are closely related in morphology, ecology and evolution that have long attracted the interest of researchers. We achieved >80% identification accuracy at 22 genera and ∼64% accuracy at 343 species using EfficientNetV2s architecture. The intermediate output of the model was extracted and downscaled to obtain the morphological feature space of fossils using t-distributed stochastic neighbor embedding (t-SNE). We found a distinctive boundary between the morphological feature points of bivalves and brachiopods in fossil morphological feature distribution maps. This study provides a possible method for studying the morphological evolution of fossil clades using computer vision in the future.

Variation of shell ornamentation with latitude and water depth-A case study using living brachiopods

As a potential anti-predatory defensive structure, the shell ornamentation of marine calcifiers is usually used to understand the macro coevolution of the interactions between predators and preys. Marine calcifiers' shell ornamentation complexity is generally believed to vary negatively with latitude and water depth. In this paper, we explored the association between shell ornamentation and latitude/bathymetry using the latest global database of living brachiopods. We found that (1) ~59% of living brachiopods species are characterized by smooth shells and that (2) there is no statistically significant linear trend, either positive or negative, between the ornamentation index and latitudes nor with water depths. Both findings are puzzling for living brachiopods as they are sharply contrasted to the patterns of fossil brachiopods whereby the latter, especially Paleozoic brachiopods, are known to exhibit (1) a much greater ornamentation diversity and (2) (at least for the geological periods that have been studied) a linear latitudinal gradient of ornamentation complexity existed. The reasons why living brachiopods have such a high proportion of smooth or weakly ornamented shells and fail to demonstrate an unequivocal linear latitudinal ornamentation gradient were explored and are linked to a multitude of potential factors rather than uniquely only to the predation pressure. Among these, the most plausible factor seems to be the cryptic (refuge-type) habitats (e.g., deep waters, cold polar regions, and submarine rock caves) that living brachiopods have been adapted to due to their low metabolism, where predation pressure is low, allowing brachiopods to enact the predator avoidance strategy rather than having to manufacture robust shell ornamentation to survive in an otherwise highly engaged predator-prey global marine ecosystem.

A new index for quantifying the ornamentational complexity of animals with shells

Morphological complexity reflects the biological structure of an organism and is closely linked to its associated functions and phylogenetics. In animals with shells, ornamentation is an important characteristic of morphological complexity, and it has various functions. However, because of the variations in type, shape, density, and strength of ornamentation, a universal quantitative measure of morphological complexity for shelled animals is lacking. We propose an ornamentation index (OI) derived from 3D scanning technology and a virtual model for quantifying ornamentation complexity. This index is designed to measure the extent of folding associated with ornamentation, regardless of shape and size. Ornamentation indices were measured for 15 ammonite specimens from the Permian to Cretaceous, 2 modern bivalves, 2 gastropods from the Pliocene to the present, and a modern echinoid. Compared with other measurements, such as the fractal dimension, rugosity, and surface-volume ratio, the OI displayed superiority in quantifying ornamentational complexity. The present study demonstrates that the OI is suitable for accurately characterizing and quantifying ornamentation complexity, regardless of shape and size. Therefore, the OI is potentially useful for comparing the ornamentational complexity of various organisms and can be exploited to provide further insight into the evolution of conchs. Ultimately, the OI can enhance our understanding of morphological evolution of shelled organisms, for example, whether shell ornaments simplify under ocean acidification or extinction, and how predation pressure is reflected in ornamentation complexity.